CsaV3_4G024520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G024520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 14349459 .. 14349929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGGCTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCAACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA

mRNA sequence

ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGGCTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCAACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA

Coding sequence (CDS)

ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGGCTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCAACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA

Protein sequence

MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNEVNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Homology
[Close]
BLAST of CsaV3_4G024520 vs. NCBI nr
Match: KGN54204.1 (hypothetical protein Csa_4G293140 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 9.7e-89
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

[Close]
BLAST of CsaV3_4G024520 vs. TrEMBL
Match: tr|A0A0A0KZF2|A0A0A0KZF2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 6.4e-89
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

The following BLAST results are available for this feature:
BLAST of CsaV3_4G024520 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54204.19.7e-89100.00hypothetical protein Csa_4G293140 [Cucumis sativus][more]
BLAST of CsaV3_4G024520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G024520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G024520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZF2|A0A0A0KZF2_CUCSA6.4e-89100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G024520.1CsaV3_4G024520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G024520CSPI04G14160Wild cucumber (PI 183967)cpicucB212
CsaV3_4G024520CsGy4G013720Cucumber (Gy14) v2cgybcucB171
CsaV3_4G024520Cla018252Watermelon (97103) v1cucwmB355
CsaV3_4G024520MELO3C003084Melon (DHL92) v3.5.1cucmeB327
CsaV3_4G024520ClCG04G008640Watermelon (Charleston Gray)cucwcgB318
CsaV3_4G024520Lsi01G013830Bottle gourd (USVL1VR-Ls)cuclsiB272
CsaV3_4G024520MELO3C003084.2Melon (DHL92) v3.6.1cucmedB320
CsaV3_4G024520Cla97C04G075310Watermelon (97103) v2cucwmbB307
CsaV3_4G024520Bhi03G001264Wax gourdcucwgoB411
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G024520Cucumber (Chinese Long) v3cuccucB116
CsaV3_4G024520Cucumber (Chinese Long) v3cuccucB170
CsaV3_4G024520Cucumber (Chinese Long) v3cuccucB180
CsaV3_4G024520Silver-seed gourdcarcucB0184
CsaV3_4G024520Silver-seed gourdcarcucB0508
CsaV3_4G024520Silver-seed gourdcarcucB0971
CsaV3_4G024520Silver-seed gourdcarcucB1043
CsaV3_4G024520Cucumber (Gy14) v2cgybcucB127
CsaV3_4G024520Cucumber (Gy14) v2cgybcucB226
CsaV3_4G024520Cucumber (Gy14) v2cgybcucB286
CsaV3_4G024520Cucumber (Gy14) v1cgycucB057
CsaV3_4G024520Cucumber (Gy14) v1cgycucB263
CsaV3_4G024520Cucumber (Gy14) v1cgycucB473
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB0302
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB0661
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB0729
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB0797
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB0850
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB0853
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB0989
CsaV3_4G024520Cucurbita maxima (Rimu)cmacucB1016
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0295
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0646
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0717
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0781
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0840
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0837
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0973
CsaV3_4G024520Cucurbita moschata (Rifu)cmocucB0999
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB0075
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB0344
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB0508
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB0510
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB0611
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB0770
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB0907
CsaV3_4G024520Cucurbita pepo (Zucchini)cpecucB1067
CsaV3_4G024520Wild cucumber (PI 183967)cpicucB160
CsaV3_4G024520Wild cucumber (PI 183967)cpicucB278
CsaV3_4G024520Wild cucumber (PI 183967)cpicucB350
CsaV3_4G024520Bottle gourd (USVL1VR-Ls)cuclsiB270
CsaV3_4G024520Bottle gourd (USVL1VR-Ls)cuclsiB299
CsaV3_4G024520Bottle gourd (USVL1VR-Ls)cuclsiB308
CsaV3_4G024520Melon (DHL92) v3.5.1cucmeB270
CsaV3_4G024520Melon (DHL92) v3.5.1cucmeB293
CsaV3_4G024520Melon (DHL92) v3.6.1cucmedB264
CsaV3_4G024520Melon (DHL92) v3.6.1cucmedB285
CsaV3_4G024520Watermelon (Charleston Gray)cucwcgB282
CsaV3_4G024520Watermelon (Charleston Gray)cucwcgB306
CsaV3_4G024520Watermelon (Charleston Gray)cucwcgB307
CsaV3_4G024520Watermelon (97103) v1cucwmB302
CsaV3_4G024520Watermelon (97103) v1cucwmB365
CsaV3_4G024520Watermelon (97103) v1cucwmB366
CsaV3_4G024520Watermelon (97103) v2cucwmbB276
CsaV3_4G024520Watermelon (97103) v2cucwmbB294
CsaV3_4G024520Wax gourdcucwgoB361