Csa4G292990 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G292990
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 11515783 .. 11515965 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAACTACTGAACCAACAAGGTCCAAAGCAACGAAGGGCAGGCTGCCTCCTAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGCTCTATGCTGTGGTGATTGGCTTTGCATCAAAATTAGCAGGACGACAGAACAAAAAGAGTGTAGATCAAGCAACAACAGAAGAACCATAG

mRNA sequence

ATGGACAAAACTACTGAACCAACAAGGTCCAAAGCAACGAAGGGCAGGCTGCCTCCTAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGCTCTATGCTGTGGTGATTGGCTTTGCATCAAAATTAGCAGGACGACAGAACAAAAAGAGTGTAGATCAAGCAACAACAGAAGAACCATAG

Coding sequence (CDS)

ATGGACAAAACTACTGAACCAACAAGGTCCAAAGCAACGAAGGGCAGGCTGCCTCCTAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGCTCTATGCTGTGGTGATTGGCTTTGCATCAAAATTAGCAGGACGACAGAACAAAAAGAGTGTAGATCAAGCAACAACAGAAGAACCATAG

Protein sequence

MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP*
Homology
[Close]
BLAST of Csa4G292990 vs. TrEMBL
Match: A0A0A0KZD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G292990 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60
          MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

[Close]
BLAST of Csa4G292990 vs. NCBI nr
Match: gi|700199031|gb|KGN54189.1| (hypothetical protein Csa_4G292990 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60
          MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

The following BLAST results are available for this feature:
BLAST of Csa4G292990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZD8_CUCSA2.0e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G292990 PE=4 SV=1[more]
BLAST of Csa4G292990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199031|gb|KGN54189.1|2.9e-24100.00hypothetical protein Csa_4G292990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G292990.1Csa4G292990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G292990CSPI04G14020Wild cucumber (PI 183967)cpicuB181
Csa4G292990Cp4.1LG10g09060Cucurbita pepo (Zucchini)cpecuB070
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G292990Melon (DHL92) v3.6.1cumedB278
Csa4G292990Silver-seed gourdcarcuB0178
Csa4G292990Silver-seed gourdcarcuB0449
Csa4G292990Silver-seed gourdcarcuB1013
Csa4G292990Watermelon (97103) v2cuwmbB274
Csa4G292990Watermelon (97103) v2cuwmbB298
Csa4G292990Wax gourdcuwgoB357
Csa4G292990Wax gourdcuwgoB407
Csa4G292990Cucumber (Chinese Long) v2cucuB092
Csa4G292990Cucumber (Chinese Long) v2cucuB137
Csa4G292990Cucumber (Chinese Long) v2cucuB138
Csa4G292990Cucumber (Chinese Long) v2cucuB145
Csa4G292990Cucumber (Gy14) v1cgycuB055
Csa4G292990Cucumber (Gy14) v1cgycuB437
Csa4G292990Cucurbita maxima (Rimu)cmacuB264
Csa4G292990Cucurbita maxima (Rimu)cmacuB837
Csa4G292990Cucurbita maxima (Rimu)cmacuB859
Csa4G292990Cucurbita moschata (Rifu)cmocuB249
Csa4G292990Cucurbita moschata (Rifu)cmocuB825
Csa4G292990Cucurbita moschata (Rifu)cmocuB847
Csa4G292990Melon (DHL92) v3.5.1cumeB294
Csa4G292990Watermelon (Charleston Gray)cuwcgB274
Csa4G292990Watermelon (Charleston Gray)cuwcgB301
Csa4G292990Watermelon (97103) v1cuwmB292
Csa4G292990Watermelon (97103) v1cuwmB338
Csa4G292990Cucurbita pepo (Zucchini)cpecuB496
Csa4G292990Cucurbita pepo (Zucchini)cpecuB619
Csa4G292990Cucurbita pepo (Zucchini)cpecuB871
Csa4G292990Bottle gourd (USVL1VR-Ls)culsiB248
Csa4G292990Bottle gourd (USVL1VR-Ls)culsiB278
Csa4G292990Cucumber (Gy14) v2cgybcuB123
Csa4G292990Cucumber (Gy14) v2cgybcuB167
Csa4G292990Cucumber (Gy14) v2cgybcuB271