Cp4.1LG10g09060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g09060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG10 : 4778092 .. 4778274 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAACTACTGGACCAACCAGGTCTAAACCAAGGAAGGGCAGGCTGCCTCCCAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGTTCTTTGAGAAGGTGGTTGGATTTGCATCAAAGTTAGCAGGACAACAGAAACAAAAGGGCGTGGATCGAGCAACAACAGAAGAACCATAG

mRNA sequence

ATGGAGGAAACTACTGGACCAACCAGGTCTAAACCAAGGAAGGGCAGGCTGCCTCCCAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGTTCTTTGAGAAGGTGGTTGGATTTGCATCAAAGTTAGCAGGACAACAGAAACAAAAGGGCGTGGATCGAGCAACAACAGAAGAACCATAG

Coding sequence (CDS)

ATGGAGGAAACTACTGGACCAACCAGGTCTAAACCAAGGAAGGGCAGGCTGCCTCCCAAAAGAGGAAGTATCAAACTAAAAATAATATCCAAGTTCTTTGAGAAGGTGGTTGGATTTGCATCAAAGTTAGCAGGACAACAGAAACAAAAGGGCGTGGATCGAGCAACAACAGAAGAACCATAG

Protein sequence

MEETTGPTRSKPRKGRLPPKRGSIKLKIISKFFEKVVGFASKLAGQQKQKGVDRATTEEP
Homology
[Close]
BLAST of Cp4.1LG10g09060 vs. TrEMBL
Match: A0A0A0KZD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G292990 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-15
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MEETTGPTRSKPRKGRLPPKRGSIKLKIISKFFEKVVGFASKLAGQQKQKGVDRATTEEP 60
          M++TT PTRSK  KGRLPPKRGSIKLKIISK +  V+GFASKLAG+Q +K VD+ATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

[Close]
BLAST of Cp4.1LG10g09060 vs. NCBI nr
Match: gi|700199031|gb|KGN54189.1| (hypothetical protein Csa_4G292990 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 

Query: 1  MEETTGPTRSKPRKGRLPPKRGSIKLKIISKFFEKVVGFASKLAGQQKQKGVDRATTEEP 60
          M++TT PTRSK  KGRLPPKRGSIKLKIISK +  V+GFASKLAG+Q +K VD+ATTEEP
Sbjct: 1  MDKTTEPTRSKATKGRLPPKRGSIKLKIISKLYAVVIGFASKLAGRQNKKSVDQATTEEP 60

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g09060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g09060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZD8_CUCSA1.3e-1575.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G292990 PE=4 SV=1[more]
BLAST of Cp4.1LG10g09060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g09060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199031|gb|KGN54189.1|1.8e-1575.00hypothetical protein Csa_4G292990 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g09060.1Cp4.1LG10g09060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g09060CmoCh03G004850Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g09060Csa4G292990Cucumber (Chinese Long) v2cpecuB070
Cp4.1LG10g09060CSPI04G14020Wild cucumber (PI 183967)cpecpiB065
Cp4.1LG10g09060CsaV3_4G024360Cucumber (Chinese Long) v3cpecucB0075
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g09060Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g09060Silver-seed gourdcarcpeB1288