Csa4G291910 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G291910
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat protein 79
Location	Chr4 : 11453218 .. 11453639 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGCCCATTGAACCTGATGCATCAATTTGGAGAGCTTTGCTCAGTTCATGTCAGATTAAAAGCAATAACAAGCTATTGGAGACCATCTTTGGAAAGCTTGTTGAATTAGAACCAAGCAATCCAGGCAATTTTATTTTGCTTTCCAATATTTATGCAGCAGCAGGCCTTTGGTCAGAAGTTGTACAGATAAGAAAGTGGCTTCGAGAAAGAGGTCTAGGAAAGCCTCCAGGAACTAGCTGGATTGTAATTGGCAATCAGGTTCACCATTTCACTGCTACTGATGTATTACACCCTCAATCAGAAAGAATTTACGAAAATTTGAATTCTTTGACATCATTGATCCGAGATTTGGGCTGACATTAAGGATTTTTCTGTCATCCAGCCAGACGTGATTTTGTGCGTGTTATGAAAAGAGCTTTT

mRNA sequence

ATGCCCATTGAACCTGATGCATCAATTTGGAGAGCTTTGCTCAGTTCATGTCAGATTAAAAGCAATAACAAGCTATTGGAGACCATCTTTGGAAAGCTTGTTGAATTAGAACCAAGCAATCCAGGCAATTTTATTTTGCTTTCCAATATTTATGCAGCAGCAGGCCTTTGGTCAGAAGTTGTACAGATAAGAAAGTGGCTTCGAGAAAGAGGTCTAGGAAAGCCTCCAGGAACTAGCTGGATTGTAATTGGCAATCAGGTTCACCATTTCACTGCTACTGATGTATTACACCCTCAATCAGAAAGAATTTACGAAAATTTGAATTCTTTGACATCATTGATCCGAGATTTGGGCTGA

Coding sequence (CDS)

ATGCCCATTGAACCTGATGCATCAATTTGGAGAGCTTTGCTCAGTTCATGTCAGATTAAAAGCAATAACAAGCTATTGGAGACCATCTTTGGAAAGCTTGTTGAATTAGAACCAAGCAATCCAGGCAATTTTATTTTGCTTTCCAATATTTATGCAGCAGCAGGCCTTTGGTCAGAAGTTGTACAGATAAGAAAGTGGCTTCGAGAAAGAGGTCTAGGAAAGCCTCCAGGAACTAGCTGGATTGTAATTGGCAATCAGGTTCACCATTTCACTGCTACTGATGTATTACACCCTCAATCAGAAAGAATTTACGAAAATTTGAATTCTTTGACATCATTGATCCGAGATTTGGGCTGA

Protein sequence

MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG*

Homology

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BLAST of Csa4G291910 vs. Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-25
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MP EPD+ +W ALL+SC++++N  L E    KL  LEP NPG ++LLSNIYAA G+W+EV
Sbjct: 551 MPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEV 610

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
             IR  +   GL K PG SWI + N+V+   A D  HPQ ++I E ++ ++  +R  G
Sbjct: 611 DSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSG 668

[Close]

BLAST of Csa4G291910 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.5e-24
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MP+ P+A +W ALLS C++  + +L ET+  +L+ LEP N GN++ LSNIY+  G W E 
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEA 535

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            ++R  + ++G+ K PG SWI +  +VH F A D  HP S++IY  L  L + +R +G
Sbjct: 536 AEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593

[Close]

BLAST of Csa4G291910 vs. Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 9.5e-24
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           M  EP A +W ALL++C+  S  ++ E    +L+ELEP NPGN +L+SN++A  G W++V
Sbjct: 750 MKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDV 809

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLT-SLIRDLG 119
            ++R  ++  G+ K PG SWI +  +VH FTA D  HP+S+ IYE L+ +T  L R++G
Sbjct: 810 EKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVG 868

[Close]

BLAST of Csa4G291910 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEP A+IW+ALL++C++  N +L       + EL+P +PG  ++L NIYA+ G W++ 
Sbjct: 424 MPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDA 483

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            ++RK ++E G+ K P  SW+ I N +H F A D  HPQ E I      + + I++LG
Sbjct: 484 ARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

[Close]

BLAST of Csa4G291910 vs. Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MP EPDA+IW  LL + ++  N +L ET   K+  +EP N G ++LLSN+YA++G W +V
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            ++R  +R++G+ K PG SWI I N+ H F+  D  HP+ + I+  L  L   ++  G
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAG 689

[Close]

BLAST of Csa4G291910 vs. TrEMBL
Match: A0A0A0KZC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291910 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV
Sbjct: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
           VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG
Sbjct: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 118

[Close]

BLAST of Csa4G291910 vs. TrEMBL
Match: A0A067JE40_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25923 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-39
Identity = 79/118 (66.95%), Postives = 95/118 (80.51%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEPDAS+WRALLS+C++ SN ++   IF  LVELEP+N GN+ILLSNIYAAAG WSEV
Sbjct: 730 MPIEPDASVWRALLSACRVHSNTEIAAEIFENLVELEPTNAGNYILLSNIYAAAGFWSEV 789

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            QIRKWL+++GL KPPGTSW+++  QVH FTA D  H QS+RIY NLNSL  L R+ G
Sbjct: 790 RQIRKWLKDKGLKKPPGTSWLIVRGQVHSFTAGDTSHLQSDRIYGNLNSLLLLTREYG 847

[Close]

BLAST of Csa4G291910 vs. TrEMBL
Match: W9RTH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015292 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36
Identity = 78/118 (66.10%), Postives = 94/118 (79.66%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIE DAS+WRALLS+C++ S+ KL  TIF KLVELEP N GN+ILLSNIYA+AGLW EV
Sbjct: 717 MPIELDASLWRALLSACRVNSDTKLAATIFEKLVELEPMNAGNYILLSNIYASAGLWLEV 776

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            +IR WL+E+GL K PG SWIV+ ++VH F A D  HPQS  IYENL SLT+LI++ G
Sbjct: 777 RKIRTWLQEKGLRKSPGISWIVVRSEVHCFAAGDASHPQSNIIYENLCSLTALIKESG 834

[Close]

BLAST of Csa4G291910 vs. TrEMBL
Match: A0A059D8T5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03685 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-36
Identity = 75/118 (63.56%), Postives = 93/118 (78.81%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIE DAS+WRALLS+CQ+ SN KL++ +F K+VELEP N GN++LLSNIYA AGLWSEV
Sbjct: 535 MPIEADASVWRALLSACQVHSNTKLVKLVFEKIVELEPMNEGNYVLLSNIYATAGLWSEV 594

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
             IR WL+E+GL KPPG SWIVI +Q H FTA D  HP+++ IY  L+SL+  I+D G
Sbjct: 595 GLIRAWLKEKGLRKPPGISWIVIRDQAHVFTARDQSHPRTDLIYAILSSLSCSIKDAG 652

[Close]

BLAST of Csa4G291910 vs. TrEMBL
Match: A5BC97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043633 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.4e-35
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEPDAS+WRALLSSC+  S+ K  +TIF KL +LEP N GN++LLSN+YA AGLW EV
Sbjct: 710 MPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEV 769

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            +IR WL+E+GL KPPG SWI++ NQVH F+A D  HPQS++IY  L+ L S +R+ G
Sbjct: 770 RRIRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETG 827

[Close]

BLAST of Csa4G291910 vs. TAIR10
Match: AT1G20230.1 (AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MP EPD+ +W ALL+SC++++N  L E    KL  LEP NPG ++LLSNIYAA G+W+EV
Sbjct: 551 MPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEV 610

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
             IR  +   GL K PG SWI + N+V+   A D  HPQ ++I E ++ ++  +R  G
Sbjct: 611 DSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSG 668

[Close]

BLAST of Csa4G291910 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-25
Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MP+ P+A +W ALLS C++  + +L ET+  +L+ LEP N GN++ LSNIY+  G W E 
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEA 535

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            ++R  + ++G+ K PG SWI +  +VH F A D  HP S++IY  L  L + +R +G
Sbjct: 536 AEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593

[Close]

BLAST of Csa4G291910 vs. TAIR10
Match: AT3G63370.1 (AT3G63370.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           M  EP A +W ALL++C+  S  ++ E    +L+ELEP NPGN +L+SN++A  G W++V
Sbjct: 750 MKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDV 809

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLT 112
            ++R  ++  G+ K PG SWI +  +VH FTA D  HP+S+ IYE L+ +T
Sbjct: 810 EKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVT 860

[Close]

BLAST of Csa4G291910 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEP A+IW+ALL++C++  N +L       + EL+P +PG  ++L NIYA+ G W++ 
Sbjct: 424 MPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDA 483

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            ++RK ++E G+ K P  SW+ I N +H F A D  HPQ E I      + + I++LG
Sbjct: 484 ARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

[Close]

BLAST of Csa4G291910 vs. TAIR10
Match: AT4G02750.1 (AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MP EPDA+IW  LL + ++  N +L ET   K+  +EP N G ++LLSN+YA++G W +V
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            ++R  +R++G+ K PG SWI I N+ H F+  D  HP+ + I+  L  L   ++  G
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAG 689

[Close]

BLAST of Csa4G291910 vs. NCBI nr
Match: gi|449448940|ref|XP_004142223.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV
Sbjct: 730 MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 789

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
           VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG
Sbjct: 790 VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 847

[Close]

BLAST of Csa4G291910 vs. NCBI nr
Match: gi|700199021|gb|KGN54179.1| (hypothetical protein Csa_4G291910 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV
Sbjct: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
           VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG
Sbjct: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 118

[Close]

BLAST of Csa4G291910 vs. NCBI nr
Match: gi|659097605|ref|XP_008449715.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEPDASIWRALLSS QIKSN KLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV
Sbjct: 730 MPIEPDASIWRALLSSWQIKSNKKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 789

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
           VQIRKWLRERGLGKPPGTSWIVIGNQVH+FTATDVLHPQSE+IYENLNSLTSLI+D+G
Sbjct: 790 VQIRKWLRERGLGKPPGTSWIVIGNQVHYFTATDVLHPQSEKIYENLNSLTSLIQDMG 847

[Close]

BLAST of Csa4G291910 vs. NCBI nr
Match: gi|802763448|ref|XP_012090003.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Jatropha curcas])

HSP 1 Score: 169.5 bits (428), Expect = 3.6e-39
Identity = 79/118 (66.95%), Postives = 95/118 (80.51%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPIEPDAS+WRALLS+C++ SN ++   IF  LVELEP+N GN+ILLSNIYAAAG WSEV
Sbjct: 730 MPIEPDASVWRALLSACRVHSNTEIAAEIFENLVELEPTNAGNYILLSNIYAAAGFWSEV 789

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            QIRKWL+++GL KPPGTSW+++  QVH FTA D  H QS+RIY NLNSL  L R+ G
Sbjct: 790 RQIRKWLKDKGLKKPPGTSWLIVRGQVHSFTAGDTSHLQSDRIYGNLNSLLLLTREYG 847

[Close]

BLAST of Csa4G291910 vs. NCBI nr
Match: gi|1009118471|ref|XP_015875878.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Ziziphus jujuba])

HSP 1 Score: 169.5 bits (428), Expect = 3.6e-39
Identity = 79/118 (66.95%), Postives = 100/118 (84.75%), Query Frame = 1


Query: 1   MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEV 60
           MPI+PDA++WRALLS+C++ S+ +L  TIF KLVE+EP N GN++LLSNIYAAAGLWSEV
Sbjct: 729 MPIKPDATLWRALLSACRVNSDIELAGTIFEKLVEIEPMNAGNYVLLSNIYAAAGLWSEV 788

Query: 61  VQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG 119
            ++RKWL+E+GL KPPG SWIV+ +QVH+FTA DV HPQS  IYENL SL +LI++ G
Sbjct: 789 RKVRKWLQEKGLRKPPGMSWIVVRSQVHYFTAGDVSHPQSHIIYENLYSLLALIKENG 846

The following BLAST results are available for this feature:

BLAST of Csa4G291910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR53_ARATH	3.0e-25	46.61	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN...	[more]
PP219_ARATH	2.5e-24	42.37	Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th...	[more]
PP296_ARATH	9.5e-24	43.70	Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidop...	[more]
PP252_ARATH	1.4e-22	40.68	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop...	[more]
PP301_ARATH	1.4e-22	40.68	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN...	[more]

BLAST of Csa4G291910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZC8_CUCSA	3.1e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291910 PE=4 SV=1	[more]
A0A067JE40_JATCU	2.5e-39	66.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25923 PE=4 SV=1	[more]
W9RTH5_9ROSA	2.0e-36	66.10	Uncharacterized protein OS=Morus notabilis GN=L484_015292 PE=4 SV=1	[more]
A0A059D8T5_EUCGR	3.4e-36	63.56	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03685 PE=4 SV=1	[more]
A5BC97_VITVI	6.4e-35	61.86	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043633 PE=4 SV=1	[more]

BLAST of Csa4G291910 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20230.1	1.7e-26	46.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G08820.1	1.4e-25	42.37	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G63370.1	1.2e-24	44.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G24000.1	7.8e-24	40.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G02750.1	7.8e-24	40.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Csa4G291910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448940\|ref\|XP_004142223.1\|	4.4e-61	100.00	PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucum...	[more]
gi\|700199021\|gb\|KGN54179.1\|	4.4e-61	100.00	hypothetical protein Csa_4G291910 [Cucumis sativus]	[more]
gi\|659097605\|ref\|XP_008449715.1\|	2.2e-57	94.92	PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis m...	[more]
gi\|802763448\|ref\|XP_012090003.1\|	3.6e-39	66.95	PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Jatro...	[more]
gi\|1009118471\|ref\|XP_015875878.1\|	3.6e-39	66.95	PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Ziziphus ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G291910.1	Csa4G291910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..81 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G291910	Cla008547	Watermelon (97103) v1	cuwmB347
Csa4G291910	MELO3C014594	Melon (DHL92) v3.5.1	cumeB295
Csa4G291910	MELO3C014594.2	Melon (DHL92) v3.6.1	cumedB279
Csa4G291910	Cla97C02G049320	Watermelon (97103) v2	cuwmbB287
Csa4G291910	Bhi10G000233	Wax gourd	cuwgoB390
Csa4G291910	CSPI04G13920	Wild cucumber (PI 183967)	cpicuB181
Csa4G291910	Cucsa.065570	Cucumber (Gy14) v1	cgycuB055
Csa4G291910	CmaCh20G000840	Cucurbita maxima (Rimu)	cmacuB549
Csa4G291910	CmoCh20G000880	Cucurbita moschata (Rifu)	cmocuB538
Csa4G291910	Cp4.1LG08g11120	Cucurbita pepo (Zucchini)	cpecuB871
Csa4G291910	CsGy4G013500	Cucumber (Gy14) v2	cgybcuB167
Csa4G291910	Carg06904	Silver-seed gourd	carcuB0552

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G291910	Cucurbita maxima (Rimu)	cmacuB606
Csa4G291910	Cucurbita moschata (Rifu)	cmocuB596
Csa4G291910	Watermelon (Charleston Gray)	cuwcgB292
Csa4G291910	Cucurbita pepo (Zucchini)	cpecuB279
Csa4G291910	Cucurbita pepo (Zucchini)	cpecuB729
Csa4G291910	Bottle gourd (USVL1VR-Ls)	culsiB246
Csa4G291910	Silver-seed gourd	carcuB0936