Csa4G126420 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G126420
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3, putative; contains IPR001912 (Ribosomal protein S4/S9, N-terminal), IPR002942 (RNA-binding S4 domain), IPR022801 (Ribosomal protein S4/S9)
LocationChr4 : 7648765 .. 7651437 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACTTAGGTCACCCACTTAAACTTGGCCTCAACCACGTACCTTTACTTTCCCCTCCACACTTACGTTTCTTAGTTTTAATTTTCTAAACCCTAACGCTAAATCTACTTTCTCTCCTAAGTCTCCGCCGTCGCCCAGTCGCCCAGTCGCCGTCGCCATCGCCGCCGGTCCACTTCTCTTTCTCTCTCTTTTGTTAAACAACCCCCATCTTCATCTCAATCCTCTATCTTGACTCTTCCACACAGCGGTTTTTTGTTCGAACCATACCGACACCTTCTTCAGCTTCAAAGTGTTGTGAGGTGAAACAGAAGGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAGTGGAAGAGAGAAGGAGGTCATAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGACGATTACAAGAAGTAACCCCCTTTCTTATATCCTCTTCTATTTTCTTCCCTTCTCTTTCTTTTATCGCTTTTAATTTGATTTCATTTAGGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTGAGTTTTTCCTCCTTCTGATTATAGTTTCTGAGAATCTAAATTTCCTTCAATACATTAAGCAAGTTTCTTGCCTGTTTGTGTATAATTACTTTTCTTGTGTGCCTCATTTCATTTTATTGTCCAACTGTGTTGTTTTCTATTTAATAACTATACTTTGAAATCTTTTACTCCTGGTTTAAACGATTGGCTTTTTGTGTTTCCTATGGATCTTGTGATCGCTGTTCACAATGTTAGTGATGAGAAAAAACTTATAGGTATTGTATTACTGCCCATTTTGATCACTGCTGAAACCTCGTTCTAACAATACAAAAAGCTAACTTATGACTTTCAGAAATTGCATTACGTTTAATATCAGCAGTGAAAATGCAAAACAAAAAGACCAAAATGGTTGCTAAGCCAAAGACTGCGTTATTTGCACATTGTGTGCCATTAAACAACTCTTCTGTCTATTTTAGTTGGTTTAAAGTATCCATCTTAGAGTCAAATTCTCCTGCCACAGTTACCTTTGAATAATTAAATGGTCTACATTTTTGGTGTTTGCTAATTTTTGGGAAAAGCATAGACAAATTGCTGATCACGTTTCTCTTATTGCCCAACAAATTTTTTGGGTATCGTGTTTCTCTTAAATCTTCTACTAGGATTTCTAGAATGAAAGGTCTTTTTTTTAGTTCCTGTGTGAAGATGAGGGCCCATTTGGATTACCTTTTCAACTGTTTGTAAATATTTTTTTTTGCACTCATAAAAACTTATTTAAACACTTAGTAAGTCAGTCTAAACACACCCTTAAGCCCCATTTTCAATCTTACATTTACGCATACCAATTAAAGAAAATATCAAGGGTTTTGTTAGGATACCACCTAACAAGAAAATACTCAAGAACACTATAGAATTTTGCGGAAAACATATTGAGAATGTGCTATAATATCATAAGAACAAGTAACTGGCTAACCTCTAGCCTTTTGAGAGGGCTTCTCCATAATTTCCAACTAAAGAAATCTTAAACCCGGAGTCTTTTGGCACTTCGTTTTGAGTTGTCTAAGGTTCTGAACTAATAGTTGGACAAGAAACTATTAATATTTATTATGGGTGATGTATATCTTTCGATAAAAGGCTTCTTGCTTTTCGTTTCTTTGTTTTTTATTTAGATTATTCGAGTCTGAACGAATAATGACATGTTAATCTGAATAAATGGAGATGAATATTAATCAGTCAGTTATATGTAACCATTTCTATTATCATTTTGGGCTATACTTGTAAATACTATTTTTAGCACTTAGAAAGTCAATCTAAACGTGCCTTTGTCTGTCATGCTCTCACCTTTTCTCTCCTACTTCTCTCCTGAAAACAATATGACAGGTACAATATGGGCGTGATACCAACCCGGCAGAGCTTGAATTTATGCGATCGCCTGTCAGTTTCATCCTTTTGCAGGTCAAAGAAACAGTTTGCAGAAAAGAATTCATTTCTACATCGCACTGTTTCATGTTTTCTACTGTTGATAGCCTAAATATTAACAATGCTTTTAGCTCTCAAAATAGCAAGTCCAATTGCCCAGGCAGTTGTGAACACTTTTTTTGCTGCCCATCCTTCTTATCTCAAGACTGTTTTTCCCTTTCTGTTTTCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTTGCCGAGCATTTGAGGGAAGCTGTTACATACATTGAACAAGGGCATATTAGAGTTGGTCCAGAGACAGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGCGAAAGATTTTACAATACAATGATCAGTTGGATGATTACGATGCTATTAACTGTTGAGATACTGTCCAAGTTTTGTATCCTTTTCATTATTTCATCGTGTATGAATCTTTTCTCTGGCACTCTTACTGAAATGGCCAAGTAATGTAGCGTCAGTTTTGCCATTTCTTTTCTAATCAATATATATAATTTTGCATTATATTTTGTAACAAGCTTGATATCTTAGCTTCATTGATGCCT

mRNA sequence

ATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAGTGGAAGAGAGAAGGAGGTCATAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGACGATTACAAGAAGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGGCAGAGCTTGAATTTATGCGATCGCCTGTCAGTTTCATCCTTTTGCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTTGCCGAGCATTTGAGGGAAGCTGTTACATACATTGAACAAGGGCATATTAGAGTTGGTCCAGAGACAGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGCGAAAGATTTTACAATACAATGATCAGTTGGATGATTACGATGCTATTAACTGTTGA

Coding sequence (CDS)

ATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAGTGGAAGAGAGAAGGAGGTCATAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGACGATTACAAGAAGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGGCAGAGCTTGAATTTATGCGATCGCCTGTCAGTTTCATCCTTTTGCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTTGCCGAGCATTTGAGGGAAGCTGTTACATACATTGAACAAGGGCATATTAGAGTTGGTCCAGAGACAGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGCGAAAGATTTTACAATACAATGATCAGTTGGATGATTACGATGCTATTAACTGTTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTMLKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDAINC*
Homology
[Close]
BLAST of Csa4G126420 vs. Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.4e-58
Identity = 103/180 (57.22%), Postives = 141/180 (78.33%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY MG++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR +L+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Csa4G126420 vs. Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.5e-57
Identity = 102/180 (56.67%), Postives = 140/180 (77.78%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR +L+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Csa4G126420 vs. Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.9e-57
Identity = 102/180 (56.67%), Postives = 140/180 (77.78%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR +L+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Csa4G126420 vs. Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP3 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-54
Identity = 97/180 (53.89%), Postives = 137/180 (76.11%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+ QVM  YHI  R+DY KY+ +C  +++L   L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLN-LCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY MGV+ T+  ++ L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           E +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD+SKIK+ +L+Y +Q+DD+D
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of Csa4G126420 vs. Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp3 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-49
Identity = 90/183 (49.18%), Postives = 134/183 (73.22%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKRE-GGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           MR LK HEQKLL+KV+FL +K +   HR+  VM RYHI+ R++Y+KY+ +C   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLN-LCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL++MG++P++  ++ + ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDY 180
           ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW D+SKIKR I +YND+LDDY
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAI 182
           D +
Sbjct: 181 DLL 183

[Close]
BLAST of Csa4G126420 vs. TrEMBL
Match: A0A0A0KZG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126420 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.4e-100
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of Csa4G126420 vs. TrEMBL
Match: A0A059ADT3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01412 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.5e-88
Identity = 157/183 (85.79%), Postives = 175/183 (95.63%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKY SLCR VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAQVMRRYHVTGRDDYKKYLSLCRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DP+R+E+T+ LLEKLYNMGVIPTR+SL LCD LSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPYRVEMTDSLLEKLYNMGVIPTRKSLALCDHLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGPETVTDPAFLVTRNMEDF+TWVD+SKIKRK+LQYN++LDDYDA
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDTSKIKRKVLQYNEKLDDYDA 180

Query: 181 INC 184
           +NC
Sbjct: 181 MNC 183

[Close]
BLAST of Csa4G126420 vs. TrEMBL
Match: D7SMM8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00950 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.7e-87
Identity = 155/182 (85.16%), Postives = 175/182 (96.15%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHREA VMHRYH+TGRDDYKKYS LCR VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAHVMHRYHVTGRDDYKKYSGLCRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DPFR+E+T+ LLEKLYN+GVIPTR+SL LCDRL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPFRIEMTDMLLEKLYNIGVIPTRKSLALCDRLAVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGP+TVTDPAFLVTRN+EDF+TWVDSSKIKRK+LQYN++LDDYDA
Sbjct: 121 HLKEAVTYIEQGHIRVGPDTVTDPAFLVTRNLEDFVTWVDSSKIKRKVLQYNERLDDYDA 180

Query: 181 IN 183
           +N
Sbjct: 181 MN 182

[Close]
BLAST of Csa4G126420 vs. TrEMBL
Match: A0A151REP1_CAJCA (U3 small nucleolar ribonucleo protein IMP3 OS=Cajanus cajan GN=KK1_037619 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 5.0e-87
Identity = 156/182 (85.71%), Postives = 173/182 (95.05%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYHITGRDDYKKYSSLC  VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYSSLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGPETVTDPA+LVTRNMEDF+TWVDSSKIKRK+LQYND+LDDYD 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAYLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 IN 183
           +N
Sbjct: 181 MN 182

[Close]
BLAST of Csa4G126420 vs. TrEMBL
Match: V7BC80_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G072900g PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 8.5e-87
Identity = 156/182 (85.71%), Postives = 172/182 (94.51%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYH+TGRDDYKKYS LC  VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSGLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDAKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYD 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 IN 183
           +N
Sbjct: 181 MN 182

[Close]
BLAST of Csa4G126420 vs. TAIR10
Match: AT5G15750.1 (AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein)

HSP 1 Score: 300.1 bits (767), Expect = 9.6e-82
Identity = 140/181 (77.35%), Postives = 161/181 (88.95%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS LCR VQKL  ++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKLYNMGVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           H +EAVTYIEQGH+RVGPET+TDPAFLVTRNMEDFITWVDSSKIKRK+L+YND LDDYD 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

Query: 181 I 182
           +
Sbjct: 181 L 181

[Close]
BLAST of Csa4G126420 vs. NCBI nr
Match: gi|449472273|ref|XP_004153543.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 1.9e-100
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of Csa4G126420 vs. NCBI nr
Match: gi|702478502|ref|XP_010032571.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Eucalyptus grandis])

HSP 1 Score: 332.4 bits (851), Expect = 5.0e-88
Identity = 157/183 (85.79%), Postives = 175/183 (95.63%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHREAQVM RYH+TGRDDYKKY SLCR VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAQVMRRYHVTGRDDYKKYLSLCRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DP+R+E+T+ LLEKLYNMGVIPTR+SL LCD LSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPYRVEMTDSLLEKLYNMGVIPTRKSLALCDHLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGPETVTDPAFLVTRNMEDF+TWVD+SKIKRK+LQYN++LDDYDA
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDTSKIKRKVLQYNEKLDDYDA 180

Query: 181 INC 184
           +NC
Sbjct: 181 MNC 183

[Close]
BLAST of Csa4G126420 vs. NCBI nr
Match: gi|225451836|ref|XP_002281732.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera])

HSP 1 Score: 330.1 bits (845), Expect = 2.5e-87
Identity = 155/182 (85.16%), Postives = 175/182 (96.15%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHREA VMHRYH+TGRDDYKKYS LCR VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAHVMHRYHVTGRDDYKKYSGLCRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DPFR+E+T+ LLEKLYN+GVIPTR+SL LCDRL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPFRIEMTDMLLEKLYNIGVIPTRKSLALCDRLAVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGP+TVTDPAFLVTRN+EDF+TWVDSSKIKRK+LQYN++LDDYDA
Sbjct: 121 HLKEAVTYIEQGHIRVGPDTVTDPAFLVTRNLEDFVTWVDSSKIKRKVLQYNERLDDYDA 180

Query: 181 IN 183
           +N
Sbjct: 181 MN 182

[Close]
BLAST of Csa4G126420 vs. NCBI nr
Match: gi|1012329435|gb|KYP41016.1| (U3 small nucleolar ribonucleo protein IMP3 [Cajanus cajan])

HSP 1 Score: 328.6 bits (841), Expect = 7.2e-87
Identity = 156/182 (85.71%), Postives = 173/182 (95.05%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYHITGRDDYKKYSSLC  VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYSSLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGPETVTDPA+LVTRNMEDF+TWVDSSKIKRK+LQYND+LDDYD 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAYLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 IN 183
           +N
Sbjct: 181 MN 182

[Close]
BLAST of Csa4G126420 vs. NCBI nr
Match: gi|593680174|ref|XP_007143450.1| (hypothetical protein PHAVU_007G072900g [Phaseolus vulgaris])

HSP 1 Score: 327.8 bits (839), Expect = 1.2e-86
Identity = 156/182 (85.71%), Postives = 172/182 (94.51%), Query Frame = 1 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYH+TGRDDYKKYS LC  VQKLV +L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSGLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDAKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HL+EAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYD 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 IN 183
           +N
Sbjct: 181 MN 182

The following BLAST results are available for this feature:
BLAST of Csa4G126420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IMP3_MOUSE5.4e-5857.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 S... [more]
IMP3_BOVIN4.5e-5756.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=... [more]
IMP3_HUMAN5.9e-5756.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 S... [more]
IMP3_YEAST1.6e-5453.89U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
IMP3_SCHPO2.7e-4949.18U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
BLAST of Csa4G126420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZG3_CUCSA1.4e-100100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126420 PE=4 SV=1[more]
A0A059ADT3_EUCGR3.5e-8885.79Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01412 PE=4 SV=1[more]
D7SMM8_VITVI1.7e-8785.16Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00950 PE=4 SV=... [more]
A0A151REP1_CAJCA5.0e-8785.71U3 small nucleolar ribonucleo protein IMP3 OS=Cajanus cajan GN=KK1_037619 PE=4 S... [more]
V7BC80_PHAVU8.5e-8785.71Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G072900g PE=4 SV=1[more]
BLAST of Csa4G126420 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G15750.19.6e-8277.35 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein[more]
BLAST of Csa4G126420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449472273|ref|XP_004153543.1|1.9e-100100.00PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus][more]
gi|702478502|ref|XP_010032571.1|5.0e-8885.79PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Eucalyptus grandis... [more]
gi|225451836|ref|XP_002281732.1|2.5e-8785.16PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera][more]
gi|1012329435|gb|KYP41016.1|7.2e-8785.71U3 small nucleolar ribonucleo protein IMP3 [Cajanus cajan][more]
gi|593680174|ref|XP_007143450.1|1.2e-8685.71hypothetical protein PHAVU_007G072900g [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
IPR022801Ribosomal_S4/S9
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045903 positive regulation of translational fidelity
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006364 rRNA processing
biological_process GO:0008150 biological_process
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005622 intracellular
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085789cucumber EST collection version 3.0transcribed_cluster
CU102860cucumber EST collection version 3.0transcribed_cluster
CU108078cucumber EST collection version 3.0transcribed_cluster
CU144315cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G126420.1Csa4G126420.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU102860CU102860transcribed_cluster
CU085789CU085789transcribed_cluster
CU144315CU144315transcribed_cluster
CU108078CU108078transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..62
score: 8.
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
score: 1.1
IPR002942RNA-binding S4 domainGENE3DG3DSA:3.10.290.10coord: 107..167
score: 7.
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
score: 1.6
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..172
score: 7.
IPR002942RNA-binding S4 domainPROFILEPS50889S4coord: 107..173
score: 1
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..182
score: 2.8E
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..182
score: 2.8E
NoneNo IPR availableunknownSSF55174Alpha-L RNA-binding motifcoord: 26..173
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G126420Cla010809Watermelon (97103) v1cuwmB306
Csa4G126420ClCG07G016070Watermelon (Charleston Gray)cuwcgB327
Csa4G126420Lsi07G009630Bottle gourd (USVL1VR-Ls)culsiB313
Csa4G126420Cla97C07G143060Watermelon (97103) v2cuwmbB324
Csa4G126420Bhi01G001720Wax gourdcuwgoB369
Csa4G126420CSPI04G09900Wild cucumber (PI 183967)cpicuB182
Csa4G126420Cucsa.174580Cucumber (Gy14) v1cgycuB266
Csa4G126420CmaCh14G011450Cucurbita maxima (Rimu)cmacuB262
Csa4G126420CmoCh14G011760Cucurbita moschata (Rifu)cmocuB247
Csa4G126420Cp4.1LG03g15440Cucurbita pepo (Zucchini)cpecuB617
Csa4G126420CsGy4G009500Cucumber (Gy14) v2cgybcuB165
Csa4G126420Carg26745Silver-seed gourdcarcuB0834
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G126420Watermelon (97103) v2cuwmbB295
Csa4G126420Watermelon (97103) v2cuwmbB314
Csa4G126420Wax gourdcuwgoB413
Csa4G126420Wax gourdcuwgoB427
Csa4G126420Cucumber (Chinese Long) v2cucuB027
Csa4G126420Cucumber (Gy14) v1cgycuB141
Csa4G126420Cucurbita maxima (Rimu)cmacuB476
Csa4G126420Cucurbita moschata (Rifu)cmocuB465
Csa4G126420Melon (DHL92) v3.5.1cumeB279
Csa4G126420Melon (DHL92) v3.5.1cumeB288
Csa4G126420Melon (DHL92) v3.5.1cumeB316
Csa4G126420Watermelon (Charleston Gray)cuwcgB298
Csa4G126420Watermelon (97103) v1cuwmB337
Csa4G126420Watermelon (97103) v1cuwmB357
Csa4G126420Cucurbita pepo (Zucchini)cpecuB567
Csa4G126420Bottle gourd (USVL1VR-Ls)culsiB272
Csa4G126420Bottle gourd (USVL1VR-Ls)culsiB302
Csa4G126420Cucumber (Gy14) v2cgybcuB029
Csa4G126420Melon (DHL92) v3.6.1cumedB264
Csa4G126420Melon (DHL92) v3.6.1cumedB273
Csa4G126420Melon (DHL92) v3.6.1cumedB300
Csa4G126420Silver-seed gourdcarcuB0721