CmoCh14G011760 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G011760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Alpha-L RNA-binding motif/rib -like
Location	Cmo_Chr14 : 9692798 .. 9694779 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGCTGAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTGATGCATCGCTATCACATCACCGGGCGGGATGATTACAAGAAGTACCTTCCCCTTTCTTCTATCTTCTTCTATTTCTACCGTTTTCTTTGTGTTTACCGCTTTCATTTTTATTTTGTTTCATTTGATGTTATAGGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAGCTCCTCGAAAAGCTGTGAGTGCTTGCCTCCTTTTGGCTATAATTTTAGACACAATTTCCTGCATTACATTAAGCAAGTTTGTCGTCTATTTGTGTAAATTAGTGATGAGAAGAAATTTATAGCATGTTGTTAGACTGCTCATTCGATCACTGCTAAAATCTCCCCTTCTAGCTTAGAGGTTCTAACAATTCAAGGGCTAGTTATGAGATTGAGAGGAGTCATTACATTCAAATCCTCCAGTCACAATTGTCCTTGAATTGTCGTCTATTTGTGTAAATTAGTGATGAGAAGAAATTTATAGCATGTTGTTAGACTGCTCATTCGATCACTGCTAAAATCTCCCCTTCTAGCTTAGAGGTTCTAACAATTCAAGGGCTAGTTATGAGATTGAGAGGAGTCATTACATTCAAATCCTCCAGTCACAATTGTCTTTGTATTAAAAAATTGATCCACACTTGTGTCATCGATGCAAACTTCTTTGATAAAGCATTGCTGATCATGTTTCTCTTATTGCCCGATACTCTTTAGGGTTTATAGAATGAAGGGTTTGTTTCCTTTTTCTTCTATGAATGATTTAGACTTTAGTTCTCCATCTTACGCCTATACCTATCATATTAAAGATACTATCAACGTTCCCTTGGACTTATCAATACCTTTTCCTCTCCTATATTGCTTAAGCCATTTTAAACCTGATATCTTTTTGCTCAATGTTTCCAGAACCACTTCATTTCTTCAATCTATCTAAGATTCTGGACTAAATGGCATAGAAACTATCACTATTCATCATGATTAATGTATGTTATAATATTCATCAAGAGGCCAAATCTTTTTTTATAGATGATCCTAATCTGAATGAATAATTGCATGCTAATCTGACTAAACTGAGATGAATTAATACAATCCGATTATATGTAACCATTTCTACTATTATTTGCAACTTTATCTGTAACATATTCCCACCTTTTCTCTCCTGAAAAAAAAAATATAACAGGTACAATATGGGCGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGACTTTCAGTGTCATCCTTTTGCAGGTAAAACGAACATCCTGCAGAAAAGAATTAATTTCTTCTTTGGAGTTTTTCATGTTTTCTACTGCTAATAGCCCAATATTATCAATACATGAACTCACATCCTTTTGCTGCATATTCTTTTCACCTCAAGCATGTTTTCCCCTTTCTCGTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCTGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTGCAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGAGAGATGAGTAGTTCTATCCAAGTTTTGGTTCCTTTTTTTGAGCACCTCATCTTGTATGAATCCTTTCTCTCCCACCCTTATTGAATTGGCTAATTAATATAGCATTGAGTGTTCTTCCATTTCCTTTTCTCATACCATATATAATTTTACATTGTATTTTGGTCACTCTATATTTTGGTCACTCTATGAAGACCATATTTTTTCAA

mRNA sequence

ATGAGGAAGCTGAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTGATGCATCGCTATCACATCACCGGGCGGGATGATTACAAGAAGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAGCTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGACTTTCAGTGTCATCCTTTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCTGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTGCAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGAGAGATGAGTAGTTCTATCCAAGTTTTGGTTCCTTTTTTTGAGCACCTCATCTTGTATGAATCCTTTCTCTCCCACCCTTATTGAATTGGCTAATTAATATAGCATTGAGTGTTCTTCCATTTCCTTTTCTCATACCATATATAATTTTACATTGTATTTTGGTCACTCTATATTTTGGTCACTCTATGAAGACCATATTTTTTCAA

Coding sequence (CDS)

ATGAGGAAGCTGAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTGATGCATCGCTATCACATCACCGGGCGGGATGATTACAAGAAGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAGCTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGACTTTCAGTGTCATCCTTTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCTGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTGCAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGA

Homology

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BLAST of CmoCh14G011760 vs. Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.0e-56
Identity = 103/180 (57.22%), Postives = 142/180 (78.89%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY MG++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

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BLAST of CmoCh14G011760 vs. Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-55
Identity = 102/180 (56.67%), Postives = 141/180 (78.33%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

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BLAST of CmoCh14G011760 vs. Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.5e-55
Identity = 102/180 (56.67%), Postives = 141/180 (78.33%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

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BLAST of CmoCh14G011760 vs. Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP3 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54
Identity = 100/180 (55.56%), Postives = 142/180 (78.89%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+TQVM  YHI  R+DY KY+ IC  +++L + L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLN-LCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY MGV+ T+  ++ L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           E +++AV +IEQGH+RVGP  +NDPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DDFD
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

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BLAST of CmoCh14G011760 vs. Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp3 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-47
Identity = 89/183 (48.63%), Postives = 135/183 (73.77%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKRE-GGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           MR LK HEQKLL+KV+FL +K +   HR+  VM RYHI+ R++Y+KY+ IC   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLN-LCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL++MG++P++  ++ + ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDF 180
           ++ + EA   IEQGH+RVGP  + DPA+LVTR++EDF+TW D+SKIKR + +YNDKLDD+
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAM 182
           D +
Sbjct: 181 DLL 183

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BLAST of CmoCh14G011760 vs. TrEMBL
Match: A0A0A0KZG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126420 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.5e-96
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

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BLAST of CmoCh14G011760 vs. TrEMBL
Match: A0A059ADT3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01412 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.2e-86
Identity = 156/183 (85.25%), Postives = 174/183 (95.08%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE QVM RYH+TGRDDYKKY S+CR VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAQVMRRYHVTGRDDYKKYLSLCRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DP+R+E+T+ LLEKLYNMGVIPTR+SL LCD LSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPYRVEMTDSLLEKLYNMGVIPTRKSLALCDHLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPAFLVTRNMEDF+TWVD+SKIKRKVLQYN+KLDD+DA
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDTSKIKRKVLQYNEKLDDYDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

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BLAST of CmoCh14G011760 vs. TrEMBL
Match: A0A151REP1_CAJCA (U3 small nucleolar ribonucleo protein IMP3 OS=Cajanus cajan GN=KK1_037619 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 9.4e-86
Identity = 156/182 (85.71%), Postives = 173/182 (95.05%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYHITGRDDYKKYSS+C  VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYSSLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPA+LVTRNMEDF+TWVDSSKIKRKVLQYNDKLDD+D 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAYLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

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BLAST of CmoCh14G011760 vs. TrEMBL
Match: V7BC80_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G072900g PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.6e-85
Identity = 156/182 (85.71%), Postives = 172/182 (94.51%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYH+TGRDDYKKYS +C  VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSGLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDAKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+D 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

[Close]

BLAST of CmoCh14G011760 vs. TrEMBL
Match: C6TBL4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G232700 PE=2 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.7e-85
Identity = 154/182 (84.62%), Postives = 172/182 (94.51%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  +M RYH+TGRDDYKKYS +C  VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLIMQRYHVTGRDDYKKYSGLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPAFLVTRNMEDF+TWVDSSKIKRKVLQYNDKLDD+D 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

[Close]

BLAST of CmoCh14G011760 vs. TAIR10
Match: AT5G15750.1 (AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein)

HSP 1 Score: 292.7 bits (748), Expect = 1.5e-79
Identity = 138/181 (76.24%), Postives = 163/181 (90.06%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS +CR VQKL +++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKLYNMGVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           H +EAVTYIEQGH+RVGPET+ DPAFLVTRNMEDFITWVDSSKIKRKVL+YND LDD+D 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

Query: 181 M 182
           +
Sbjct: 181 L 181

[Close]

BLAST of CmoCh14G011760 vs. TAIR10
Match: AT5G39850.1 (AT5G39850.1 Ribosomal protein S4)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 35/130 (26.92%), Postives = 67/130 (51.54%), Query Frame = 1


Query: 20  WKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK+P R+   E LL 
Sbjct: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLR 80

Query: 80  KLYNMGVIP-TRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++  T+  L+    L+V +F  RRL T++ +   A+ +  A   I Q HIRVG 
Sbjct: 81  RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGR 140

Query: 140 ETVNDPAFLV 149
           + VN P+F+V
Sbjct: 141 QLVNIPSFMV 150

[Close]

BLAST of CmoCh14G011760 vs. TAIR10
Match: AT5G15200.1 (AT5G15200.1 Ribosomal protein S4)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 1


Query: 20  WKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK P R+   E LL 
Sbjct: 21  YEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLR 80

Query: 80  KLYNMGVIPTRQS-LNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++   Q+ L+    L+V +F  RRL T++ +   A+ +  +   I Q HIRVG 
Sbjct: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140

Query: 140 ETVNDPAFLVTRNMEDFITWVDSS 163
           + VN P+F+V  + +  I +  +S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164

[Close]

BLAST of CmoCh14G011760 vs. NCBI nr
Match: gi|449472273|ref|XP_004153543.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 6.4e-96
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

[Close]

BLAST of CmoCh14G011760 vs. NCBI nr
Match: gi|702478502|ref|XP_010032571.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Eucalyptus grandis])

HSP 1 Score: 325.9 bits (834), Expect = 4.6e-86
Identity = 156/183 (85.25%), Postives = 174/183 (95.08%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE QVM RYH+TGRDDYKKY S+CR VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAQVMRRYHVTGRDDYKKYLSLCRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DP+R+E+T+ LLEKLYNMGVIPTR+SL LCD LSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPYRVEMTDSLLEKLYNMGVIPTRKSLALCDHLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPAFLVTRNMEDF+TWVD+SKIKRKVLQYN+KLDD+DA
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDTSKIKRKVLQYNEKLDDYDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

[Close]

BLAST of CmoCh14G011760 vs. NCBI nr
Match: gi|1012329435|gb|KYP41016.1| (U3 small nucleolar ribonucleo protein IMP3 [Cajanus cajan])

HSP 1 Score: 324.3 bits (830), Expect = 1.3e-85
Identity = 156/182 (85.71%), Postives = 173/182 (95.05%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYHITGRDDYKKYSS+C  VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYSSLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPA+LVTRNMEDF+TWVDSSKIKRKVLQYNDKLDD+D 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAYLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

[Close]

BLAST of CmoCh14G011760 vs. NCBI nr
Match: gi|593680174|ref|XP_007143450.1| (hypothetical protein PHAVU_007G072900g [Phaseolus vulgaris])

HSP 1 Score: 323.6 bits (828), Expect = 2.3e-85
Identity = 156/182 (85.71%), Postives = 172/182 (94.51%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYH+TGRDDYKKYS +C  VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSGLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDAKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+D 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

[Close]

BLAST of CmoCh14G011760 vs. NCBI nr
Match: gi|356535851|ref|XP_003536456.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max])

HSP 1 Score: 322.8 bits (826), Expect = 3.9e-85
Identity = 154/182 (84.62%), Postives = 172/182 (94.51%), Query Frame = 1


Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  +M RYH+TGRDDYKKYS +C  VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLIMQRYHVTGRDDYKKYSGLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPAFLVTRNMEDF+TWVDSSKIKRKVLQYNDKLDD+D 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

The following BLAST results are available for this feature:

BLAST of CmoCh14G011760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IMP3_MOUSE	5.0e-56	57.22	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 S...	[more]
IMP3_BOVIN	4.2e-55	56.67	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=...	[more]
IMP3_HUMAN	5.5e-55	56.67	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 S...	[more]
IMP3_YEAST	2.1e-54	55.56	U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s...	[more]
IMP3_SCHPO	1.5e-47	48.63	U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (...	[more]

BLAST of CmoCh14G011760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG3_CUCSA	4.5e-96	95.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G126420 PE=4 SV=1	[more]
A0A059ADT3_EUCGR	3.2e-86	85.25	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01412 PE=4 SV=1	[more]
A0A151REP1_CAJCA	9.4e-86	85.71	U3 small nucleolar ribonucleo protein IMP3 OS=Cajanus cajan GN=KK1_037619 PE=4 S...	[more]
V7BC80_PHAVU	1.6e-85	85.71	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G072900g PE=4 SV=1	[more]
C6TBL4_SOYBN	2.7e-85	84.62	Uncharacterized protein OS=Glycine max GN=GLYMA_10G232700 PE=2 SV=1	[more]

BLAST of CmoCh14G011760 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15750.1	1.5e-79	76.24	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
AT5G39850.1	1.2e-07	26.92	Ribosomal protein S4	[more]
AT5G15200.1	1.6e-07	25.00	Ribosomal protein S4	[more]

BLAST of CmoCh14G011760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449472273\|ref\|XP_004153543.1\|	6.4e-96	95.63	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus]	[more]
gi\|702478502\|ref\|XP_010032571.1\|	4.6e-86	85.25	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Eucalyptus grandis...	[more]
gi\|1012329435\|gb\|KYP41016.1\|	1.3e-85	85.71	U3 small nucleolar ribonucleo protein IMP3 [Cajanus cajan]	[more]
gi\|593680174\|ref\|XP_007143450.1\|	2.3e-85	85.71	hypothetical protein PHAVU_007G072900g [Phaseolus vulgaris]	[more]
gi\|356535851\|ref\|XP_003536456.1\|	3.9e-85	84.62	PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001912	Ribosomal_S4/S9_N
IPR002942	S4_RNA-bd
IPR022801	Ribosomal_S4/S9

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0019843	rRNA binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045903	positive regulation of translational fidelity
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006364	rRNA processing
biological_process	GO:0008150	biological_process
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005622	intracellular
cellular_component	GO:0034457	Mpp10 complex
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0030515	snoRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G011760.1	CmoCh14G011760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 3..62 score: 1.
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 3..106 score: 5.3
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 107..165 score: 7.
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 107..153 score: 3.2
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 107..170 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 107..173 score: 11
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..182 score: 7.0E
None	No IPR available	PANTHER	PTHR11831:SF1	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3	coord: 1..182 score: 7.0E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 26..174 score: 1.96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G011760	Cucsa.174580	Cucumber (Gy14) v1	cgycmoB0496
CmoCh14G011760	CmaCh14G011450	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G011760	Cla010809	Watermelon (97103) v1	cmowmB219
CmoCh14G011760	Csa4G126420	Cucumber (Chinese Long) v2	cmocuB247
CmoCh14G011760	ClCG07G016070	Watermelon (Charleston Gray)	cmowcgB231
CmoCh14G011760	CSPI04G09900	Wild cucumber (PI 183967)	cmocpiB252
CmoCh14G011760	Lsi07G009630	Bottle gourd (USVL1VR-Ls)	cmolsiB245
CmoCh14G011760	Cp4.1LG03g15440	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G011760	CsaV3_4G010040	Cucumber (Chinese Long) v3	cmocucB0293
CmoCh14G011760	Cla97C07G143060	Watermelon (97103) v2	cmowmbB256
CmoCh14G011760	Bhi01G001720	Wax gourd	cmowgoB0309
CmoCh14G011760	CsGy4G009500	Cucumber (Gy14) v2	cgybcmoB457
CmoCh14G011760	Carg26745	Silver-seed gourd	carcmoB1108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G011760	Cucurbita moschata (Rifu)	cmocmoB204
CmoCh14G011760	Cucurbita maxima (Rimu)	cmacmoB463
CmoCh14G011760	Melon (DHL92) v3.5.1	cmomeB234
CmoCh14G011760	Cucurbita pepo (Zucchini)	cmocpeB242
CmoCh14G011760	Melon (DHL92) v3.6.1	cmomedB228
CmoCh14G011760	Melon (DHL92) v3.6.1	cmomedB266
CmoCh14G011760	Silver-seed gourd	carcmoB0953
CmoCh14G011760	Wax gourd	cmowgoB0312
CmoCh14G011760	Wax gourd	cmowgoB0348