Carg26745 (gene) Silver-seed gourd

NameCarg26745
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionU3 small nucleolar ribonucleoprotein IMP3
LocationCucurbita_argyrosperma_scaffold_138 : 46224 .. 48384 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTATCTCTGCCGTCGCCCACAATCTTTTCCTTGCCACTCCCTCGTCTCTTCTCCCACGTTCCCTTCTCCGCTGAGACTCCCGTTTGTTCGACACCAAGACCTTCCTCGGTTGCCAAGTGTTTTGAGGTGAAACAGAGGAGCCGATGAGGAAGCTTAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTCATGCATCGCTATCACATCACCGGTCGGGATGATTACAAGAAGTACCTTCCCCTTTCTTCTATCTTCTTCTATTTCTACCGTTTTCTTTCTGTTTACCGCTTTGATTTTTATTTTGTTTCATTTCATGTTTTAGGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAACTCCTCGAAAAGCTGTGAGTTTTCCCCTCCTTTTGGCTATAATTTTAGACACAAAATTTCCTACATTACATTTACATTAACCAAGTTTCTCGTCTATTTGTGTATATTAGTGATGAGAAGAAATTTATGGCATGTTGTTTGACTGCTCTTTCGATCACTGCTAAAATCTCCCCTTCTAGGTTCTAACAATTAAAGGGCTAGTTATGAGATTGGGAGGAGTCATTACATTCAAATCCTCCAGCCACAATTGTCTTTGTATTAAAAAAACCGATCCACATTTGTGTCATCGATGCGGACTTCTTTGATAAAGCATTGCTGATCATGTTTCTCTTATTGCCCGATACTCTTTATGGTTTATAGAATGAAGGGTTTGTTTCTTATTTCTTCTATGAATGATTTAGACTTTAGTTGTCCGATTTACGCCTATACCTATCATATTAAAGAAACTATCAACTTTCCAATGGACTTATCAATGCCTTTTCCTCTCCTATATTGCTTAAGCCATTTTAAACCTGATATCTTTTTGCTCAATGTTTCCAGAACCACTTCATTTCTTCAATCTATCTAAGATTCTGGATTAAATGGCATAAGAAACTATCAATATTCATCATGATTAATGTATATTATAATTTTCTAATGCTGAAATCATTTTGAACTTGTCTTATAGATGATCCTAATCTGAATGAATAATTGCATGCTAATCTGACTAAACTGAGATGAATTAATACAATCCGATTATATGTAACCATTTCTACTATTATTTGCAACTTTATCTGTAACATATTCCCACCTTTTCTCTCCTGAAAAAAAAATATATATATAACAGGTACAATATGGGTGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGCCTGTCAGTGTCATCCTTTTGCAGGTAAAACGAACATCCTGCAGAAAACAATTCATTTCTTCTTTGGAGTTTTTCATGTTTTCTACTGCTAATAGCCCAATATTACCAATACATGAACCCTCATCCTTTTGCTGCATATTATTTTGACCTCAACCCTGTTTTCCCCTTTCTCGTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCAGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTACAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGAGAGATGAGTAGTTCTATCCAAGTTTTGGTTCCTTTTTTTGAGCACCTCATCTTGTATGAATCCTTTCTCTCCCACCCTTATTGAATTGGCTAATTAATATAGCATTGAGTGTTCTTCCATTTCCTTTTCTCATACCATATATAATTTACATTGTTTTATGTTACGAGCCTCATATCTCAGCTTCATCGATATTGCATAGCATGTAAGGTTGAATTCTTTTCTACCATTTTATATCTAATTGTGATATGTAGGGCTGTATTGATATATTTGATATCTATTTCTATTTGTTATAAACTTCATTAATTACAACAATTGTAATGATGAATTTATTAGGAACCTTCTATGTATTTTGGTCATTCTATGAAGACTATATATTTTTTTAAAAAATAACCAATCTTATTTACC

mRNA sequence

ATCTATCTCTGCCGTCGCCCACAATCTTTTCCTTGCCACTCCCTCGTCTCTTCTCCCACGTTCCCTTCTCCGCTGAGACTCCCGTTTGTTCGACACCAAGACCTTCCTCGGTTGCCAAGTGTTTTGAGGTGAAACAGAGGAGCCGATGAGGAAGCTTAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTCATGCATCGCTATCACATCACCGGTCGGGATGATTACAAGAAGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAACTCCTCGAAAAGCTGTACAATATGGGTGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGCCTGTCAGTGTCATCCTTTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCAGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTACAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGAGAGATGAGTAGTTCTATCCAAGTTTTGGTTCCTTTTTTTGAGCACCTCATCTTGTATGAATCCTTTCTCTCCCACCCTTATTGAATTGGCTAATTAATATAGCATTGAGTGTTCTTCCATTTCCTTTTCTCATACCATATATAATTTACATTGTTTTATGTTACGAGCCTCATATCTCAGCTTCATCGATATTGCATAGCATGTAAGGTTGAATTCTTTTCTACCATTTTATATCTAATTGTGATATGTAGGGCTGTATTGATATATTTGATATCTATTTCTATTTGTTATAAACTTCATTAATTACAACAATTGTAATGATGAATTTATTAGGAACCTTCTATGTATTTTGGTCATTCTATGAAGACTATATATTTTTTTAAAAAATAACCAATCTTATTTACC

Coding sequence (CDS)

ATGAGGAAGCTTAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGAGGTCATAGAGAAACCCAAGTCATGCATCGCTATCACATCACCGGTCGGGATGATTACAAGAAGTATTCGAGCATATGCCGGGGCGTCCAGAAGCTGGTTAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTCCGATTGGAATTAACCGAGAAACTCCTCGAAAAGCTGTACAATATGGGTGTGATACCAACCCGACAGAGCTTGAATTTATGCGATCGCCTGTCAGTGTCATCCTTTTGCAGACGGAGGCTGTCGACAGTACTGGTACGTTTGAAATTCGCAGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAAGGGCATATTAGAGTTGGTCCAGAGACAGTTAATGACCCAGCATTTCTAGTTACAAGGAACATGGAGGACTTCATAACATGGGTTGATTCATCGAAGATAAAGAGAAAGGTTCTACAATACAACGATAAGTTGGATGATTTCGATGCAATGAACTGTTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDAMNC
BLAST of Carg26745 vs. NCBI nr
Match: XP_022955364.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_023526276.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 7.1e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

BLAST of Carg26745 vs. NCBI nr
Match: XP_022980729.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita maxima])

HSP 1 Score: 367.5 bits (942), Expect = 2.7e-98
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLV ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVCML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

BLAST of Carg26745 vs. NCBI nr
Match: XP_004153543.1 (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_4G126420 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 1.3e-95
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

BLAST of Carg26745 vs. NCBI nr
Match: XP_022155080.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Momordica charantia])

HSP 1 Score: 353.6 bits (906), Expect = 4.0e-94
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MR+LKFHEQKLLKKVNFLEWKREGGHRE QVM RYH+TGRDDYKKYSS+CR VQKLVSML
Sbjct: 1   MRQLKFHEQKLLKKVNFLEWKREGGHREAQVMQRYHVTGRDDYKKYSSLCRRVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYN+GVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNIGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

BLAST of Carg26745 vs. NCBI nr
Match: OWM84708.1 (hypothetical protein CDL15_Pgr027495 [Punica granatum] >PKI69862.1 hypothetical protein CRG98_009737 [Punica granatum])

HSP 1 Score: 333.6 bits (854), Expect = 4.3e-88
Identity = 161/182 (88.46%), Postives = 176/182 (96.70%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE QVMHRYH+TGRDDYKKYSS+CR VQKLVS+L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAQVMHRYHVTGRDDYKKYSSLCRMVQKLVSIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DPFR+E+T+ LL+KLYNMGVIPTR+SL LCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPFRIEMTDMLLDKLYNMGVIPTRKSLALCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EA+TYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLKEAITYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

BLAST of Carg26745 vs. TAIR10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein)

HSP 1 Score: 292.7 bits (748), Expect = 1.5e-79
Identity = 138/181 (76.24%), Postives = 163/181 (90.06%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS +CR VQKL +++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKLYNMGVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           H +EAVTYIEQGH+RVGPET+ DPAFLVTRNMEDFITWVDSSKIKRKVL+YND LDD+D 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

Query: 181 M 182
           +
Sbjct: 181 L 181

BLAST of Carg26745 vs. TAIR10
Match: AT5G39850.1 (Ribosomal protein S4)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 35/130 (26.92%), Postives = 67/130 (51.54%), Query Frame = 0

Query: 20  WKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK+P R+   E LL 
Sbjct: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLR 80

Query: 80  KLYNMGVI-PTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++  T+  L+    L+V +F  RRL T++ +   A+ +  A   I Q HIRVG 
Sbjct: 81  RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGR 140

Query: 140 ETVNDPAFLV 149
           + VN P+F+V
Sbjct: 141 QLVNIPSFMV 150

BLAST of Carg26745 vs. TAIR10
Match: AT5G15200.1 (Ribosomal protein S4)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-07
Identity = 36/144 (25.00%), Postives = 72/144 (50.00%), Query Frame = 0

Query: 20  WKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK P R+   E LL 
Sbjct: 21  YEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLR 80

Query: 80  KLYNMGVIPTRQS-LNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++   Q+ L+    L+V +F  RRL T++ +   A+ +  +   I Q HIRVG 
Sbjct: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140

Query: 140 ETVNDPAFLVTRNMEDFITWVDSS 163
           + VN P+F+V  + +  I +  +S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164

BLAST of Carg26745 vs. Swiss-Prot
Match: sp|Q921Y2|IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.1e-56
Identity = 103/180 (57.22%), Postives = 142/180 (78.89%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY MG++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

BLAST of Carg26745 vs. Swiss-Prot
Match: sp|Q3T0M3|IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.3e-55
Identity = 102/180 (56.67%), Postives = 141/180 (78.33%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

BLAST of Carg26745 vs. Swiss-Prot
Match: sp|Q9NV31|IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.6e-55
Identity = 102/180 (56.67%), Postives = 141/180 (78.33%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ + R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           +HL+ AV ++EQGH+RVGP+ V DPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DDFD
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

BLAST of Carg26745 vs. Swiss-Prot
Match: sp|P32899|IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54
Identity = 100/180 (55.56%), Postives = 142/180 (78.89%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+TQVM  YHI  R+DY KY+ IC  +++L + L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY MGV+ T+  + +L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFD 180
           E +++AV +IEQGH+RVGP  +NDPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DDFD
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

BLAST of Carg26745 vs. Swiss-Prot
Match: sp|O13835|IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-47
Identity = 89/183 (48.63%), Postives = 135/183 (73.77%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKR-EGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSM 60
           MR LK HEQKLL+KV+FL +K  +  HR+  VM RYHI+ R++Y+KY+ IC   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL++MG++P++  + ++ ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDF 180
           ++ + EA   IEQGH+RVGP  + DPA+LVTR++EDF+TW D+SKIKR + +YNDKLDD+
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAM 182
           D +
Sbjct: 181 DLL 183

BLAST of Carg26745 vs. TrEMBL
Match: tr|A0A0A0KZG3|A0A0A0KZG3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 8.3e-96
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 MNC 184
           +NC
Sbjct: 181 INC 183

BLAST of Carg26745 vs. TrEMBL
Match: tr|A0A218XIS8|A0A218XIS8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027495 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.9e-88
Identity = 161/182 (88.46%), Postives = 176/182 (96.70%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE QVMHRYH+TGRDDYKKYSS+CR VQKLVS+L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAQVMHRYHVTGRDDYKKYSSLCRMVQKLVSIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DPFR+E+T+ LL+KLYNMGVIPTR+SL LCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPFRIEMTDMLLDKLYNMGVIPTRKSLALCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EA+TYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLKEAITYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

BLAST of Carg26745 vs. TrEMBL
Match: tr|A0A059ADT3|A0A059ADT3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01412 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 6.0e-86
Identity = 156/183 (85.25%), Postives = 174/183 (95.08%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE QVM RYH+TGRDDYKKY S+CR VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHREAQVMRRYHVTGRDDYKKYLSLCRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DP+R+E+T+ LLEKLYNMGVIPTR+SL LCD LSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPRDPYRVEMTDSLLEKLYNMGVIPTRKSLALCDHLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPAFLVTRNMEDF+TWVD+SKIKRKVLQYN+KLDD+DA
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDTSKIKRKVLQYNEKLDDYDA 180

Query: 181 MNC 184
           MNC
Sbjct: 181 MNC 183

BLAST of Carg26745 vs. TrEMBL
Match: tr|A0A151REP1|A0A151REP1_CAJCA (U3 small nucleolar ribonucleo protein IMP3 OS=Cajanus cajan OX=3821 GN=KK1_037619 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.7e-85
Identity = 156/182 (85.71%), Postives = 173/182 (95.05%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKVNFLEWKREGGHRE  VM RYHITGRDDYKKYSS+C  VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVNFLEWKREGGHRENLVMQRYHITGRDDYKKYSSLCHMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ KDPFR+++T+KLLEKLYNMGVIPTRQS+ LC+RL+VSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HL+EAVTYIEQGHIRVGPETV DPA+LVTRNMEDF+TWVDSSKIKRKVLQYNDKLDD+D 
Sbjct: 121 HLKEAVTYIEQGHIRVGPETVTDPAYLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDL 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

BLAST of Carg26745 vs. TrEMBL
Match: tr|A0A200Q351|A0A200Q351_9MAGN (Ribosomal protein S4/S9 OS=Macleaya cordata OX=56857 GN=BVC80_1215g18 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.0e-85
Identity = 154/182 (84.62%), Postives = 175/182 (96.15%), Query Frame = 0

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60
           MRKLKFHE+KLLKKV+FLEWKREGGHRETQVM RYH+TGRDDYKKYS ICR VQKLV++L
Sbjct: 1   MRKLKFHEKKLLKKVDFLEWKREGGHRETQVMRRYHVTGRDDYKKYSGICRMVQKLVNIL 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+ +DP+R+E+++ LLEKLYNMGVIPTR+SL LCDR+SVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KQMDSRDPYRIEMSDMLLEKLYNMGVIPTRKSLALCDRMSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180
           HLREAVTYIEQGH+RVGPETV DPAFLVTRNMEDF+TWVDSSKIKRKVL+YN+K+DD+DA
Sbjct: 121 HLREAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLEYNEKVDDYDA 180

Query: 181 MN 183
           MN
Sbjct: 181 MN 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022955364.17.1e-99100.00U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_02352... [more]
XP_022980729.12.7e-9899.45U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita maxima][more]
XP_004153543.11.3e-9595.63PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >... [more]
XP_022155080.14.0e-9495.08U3 small nucleolar ribonucleoprotein protein IMP3 [Momordica charantia][more]
OWM84708.14.3e-8888.46hypothetical protein CDL15_Pgr027495 [Punica granatum] >PKI69862.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
AT5G15750.11.5e-7976.24Alpha-L RNA-binding motif/Ribosomal protein S4 family protein[more]
AT5G39850.11.2e-0726.92Ribosomal protein S4[more]
AT5G15200.11.6e-0725.00Ribosomal protein S4[more]
Match NameE-valueIdentityDescription
sp|Q921Y2|IMP3_MOUSE5.1e-5657.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
sp|Q3T0M3|IMP3_BOVIN4.3e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
sp|Q9NV31|IMP3_HUMAN5.6e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
sp|P32899|IMP3_YEAST2.1e-5455.56U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
sp|O13835|IMP3_SCHPO1.5e-4748.63U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KZG3|A0A0A0KZG3_CUCSA8.3e-9695.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=4 SV=1[more]
tr|A0A218XIS8|A0A218XIS8_PUNGR2.9e-8888.46Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027495 PE=4 SV=1[more]
tr|A0A059ADT3|A0A059ADT3_EUCGR6.0e-8685.25Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01412 PE=4 SV... [more]
tr|A0A151REP1|A0A151REP1_CAJCA1.7e-8585.71U3 small nucleolar ribonucleo protein IMP3 OS=Cajanus cajan OX=3821 GN=KK1_03761... [more]
tr|A0A200Q351|A0A200Q351_9MAGN3.0e-8584.62Ribosomal protein S4/S9 OS=Macleaya cordata OX=56857 GN=BVC80_1215g18 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR022801Ribosomal_S4/S9
IPR036986S4_RNA-bd_sf
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26745-RACarg26745-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..170
e-value: 2.9E-8
score: 43.4
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
e-value: 3.3E-11
score: 42.6
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 107..173
score: 11.707
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 107..175
e-value: 4.66591E-8
score: 46.0886
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 5.3E-26
score: 102.4
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..62
e-value: 1.4E-7
score: 32.2
IPR036986RNA-binding S4 domain superfamilyGENE3DG3DSA:3.10.290.10coord: 108..181
e-value: 4.2E-8
score: 35.2
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..180
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..180
NoneNo IPR availableSUPERFAMILYSSF55174Alpha-L RNA-binding motifcoord: 26..174