Csa4G099730 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G099730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRetrograde Golgi transport protein RGP1-like protein
LocationChr4 : 6507356 .. 6508269 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCGAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTGGGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCATTTTATATGATATTTTTCTCAACCGTTGCCTTCTCCTTGTGTAATGTGTGATTGTTATTCGTCAAATTTGTTATTAGCTTTTATTCTGTTACGTTTTGTAATGTTTCCAGTAAACTCTCTATTTGACAGAGGGACTTTTCATTCTAAGGCAGTATTCCTTTTTGGAGTAATGAAAGGAAACCAGTACTTGTCACTTTGTAGAATTTGCATGGTTCTGCAAAATTTTTACTTATTCATCTACTGTCTTTTCAAAAATTGCATCGGTTTTCCTAGCTGATGTAGTTCAATTTCATGTCCTTTGTTTTGTCAGGTGAACACATTTTCATGGACTGCTCGGTACAATCAATAGTTTCAAGTCAGATAATATCTTCGGGGGCTATGAAGTCATGTAAGCCCATGTTGTTGTATGCACAACATTTCTGTACCTCAGTTGTTGATATGCATGCCGTTCACTTGAATATTACACATTTCACATCCTGGGACTGTTGTTCCTTTAGTTTGATTCATAGGGTCCGGATTTTTTGAGAAAGAGTAAATGCTCTCTTCCAATATTATTGATTGAAAACTCAATTTTCAAGCAGAGGTCGAGCCTCTTAAATATACAATCAATGAA

mRNA sequence

ATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCGAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTGGGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGTGAACACATTTTCATGGACTGCTCGGTACAATCAATAGTTTCAAGTCAGATAATATCTTCGGGGGCTATGAAGTCATGTAAGCCCATGTTGTTGTATGCACAACATTTCTGTACCTCAGTTGTTGATATGCATGCCGTTCACTTGAATATTACACATTTCACATCCTGGGACTGTTGTTCCTTTAGTTTGATTCATAGGGTCCGGATTTTTTGA

Coding sequence (CDS)

ATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCGAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTGGGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGTGAACACATTTTCATGGACTGCTCGGTACAATCAATAGTTTCAAGTCAGATAATATCTTCGGGGGCTATGAAGTCATGTAAGCCCATGTTGTTGTATGCACAACATTTCTGTACCTCAGTTGTTGATATGCATGCCGTTCACTTGAATATTACACATTTCACATCCTGGGACTGTTGTTCCTTTAGTTTGATTCATAGGGTCCGGATTTTTTGA

Protein sequence

MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAMKSCKPMLLYAQHFCTSVVDMHAVHLNITHFTSWDCCSFSLIHRVRIF*
Homology
[Close]
BLAST of Csa4G099730 vs. TrEMBL
Match: A0A0A0KVN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099730 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.1e-91
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
           MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120
           CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM
Sbjct: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120

Query: 121 KSCKPMLLYAQHFCTSVVDMHAVHLNITHFTSWDCCSFSLIHRVRIF 168
           KSCKPMLLYAQHFCTSVVDMHAVHLNITHFTSWDCCSFSLIHRVRIF
Sbjct: 121 KSCKPMLLYAQHFCTSVVDMHAVHLNITHFTSWDCCSFSLIHRVRIF 167

[Close]
BLAST of Csa4G099730 vs. TrEMBL
Match: V7AM64_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAA-AADKVEKSAKSE-----FFPGLKLRSDKDVYRPGDPVVVTIEICS 60
           MF  RFSIFG G + A D    ++K E       P LKL +D+ VYRPGDPVVVTI+I  
Sbjct: 1   MFSGRFSIFGGGDSHAVDNATSTSKGEGVAPVVSPTLKLETDRQVYRPGDPVVVTIQI-- 60

Query: 61  SVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQI 120
           S P   CS L+ERL FEI G+ KLD QWF+TQKP PGSKQRRGEH+F++ S   +V++ I
Sbjct: 61  SNPSKGCSFLMERLGFEIRGIEKLDTQWFATQKPYPGSKQRRGEHVFLEFSTPLLVANHI 120

Query: 121 ISSGAMKS 123
           I++GA KS
Sbjct: 121 INAGATKS 126

[Close]
BLAST of Csa4G099730 vs. TrEMBL
Match: V7AQ61_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAA-AADKVEKSAKSE-----FFPGLKLRSDKDVYRPGDPVVVTIEICS 60
           MF  RFSIFG G + A D    ++K E       P LKL +D+ VYRPGDPVVVTI+I  
Sbjct: 1   MFSGRFSIFGGGDSHAVDNATSTSKGEGVAPVVSPTLKLETDRQVYRPGDPVVVTIQI-- 60

Query: 61  SVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQI 120
           S P   CS L+ERL FEI G+ KLD QWF+TQKP PGSKQRRGEH+F++ S   +V++ I
Sbjct: 61  SNPSKGCSFLMERLGFEIRGIEKLDTQWFATQKPYPGSKQRRGEHVFLEFSTPLLVANHI 120

Query: 121 ISSGAMKS 123
           I++GA KS
Sbjct: 121 INAGATKS 126

[Close]
BLAST of Csa4G099730 vs. TrEMBL
Match: D7T9G4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02190 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.8e-28
Identity = 71/131 (54.20%), Postives = 92/131 (70.23%), Query Frame = 1 

Query: 6   FSIFGTGAA--AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD--- 65
           FS FG+G +  A D V    KSE  P LKLR+DKDVYRPG+ +VV+IEI +    +D   
Sbjct: 10  FSFFGSGDSNKAYDSVG-GGKSELVPSLKLRTDKDVYRPGESIVVSIEIHNPSGVVDELS 69

Query: 66  ---------CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVS 123
                    C LL+E L FEI G+ KLD+QW++TQKP+PGSKQRRGEH F+DC+  SIVS
Sbjct: 70  KKENAGDVLCPLLVEMLSFEIKGIEKLDSQWYATQKPLPGSKQRRGEHTFLDCATPSIVS 129

[Close]
BLAST of Csa4G099730 vs. TrEMBL
Match: B9HGM4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07820g PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.7e-28
Identity = 68/121 (56.20%), Postives = 87/121 (71.90%), Query Frame = 1 

Query: 7   SIFGTGAAA-ADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICS----SVPQLDC 66
           + FG+G +   D      K E  P LK+++DKDVYRPGD ++VTIEI +    +   +  
Sbjct: 3   AFFGSGGSRKVDNSSDGRKDELVPTLKVQTDKDVYRPGDSILVTIEISNPKDGASEDVMS 62

Query: 67  SLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAMK 123
           SLLIE+L F I G+ KLD QWF+TQKP+PGSKQRRGEH+FMDCS  SIVS+QI+SSGA K
Sbjct: 63  SLLIEKLGFAIRGIQKLDNQWFATQKPLPGSKQRRGEHVFMDCSTSSIVSNQIVSSGATK 122

[Close]
BLAST of Csa4G099730 vs. TAIR10
Match: AT1G50120.1 (AT1G50120.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAA--DKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQ 60
           M  SRFS  G G+++   D V  S  S+  P L +++DKDVYRPGD + VTIE+ +S   
Sbjct: 1   MLSSRFSFLGIGSSSEVNDSVGVSG-SKIKPSLSVQTDKDVYRPGDSIFVTIEVANSHDN 60

Query: 61  L-DCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISS 120
             + S+L+E+L FE+ GL KLD QWFSTQKP PGSK RRGEHIF+D S  S++S+QI+S 
Sbjct: 61  ASNPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFLDSSTPSLISNQILSP 120

[Close]
BLAST of Csa4G099730 vs. NCBI nr
Match: gi|700198512|gb|KGN53670.1| (hypothetical protein Csa_4G099730 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 4.4e-91
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
           MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120
           CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM
Sbjct: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120

Query: 121 KSCKPMLLYAQHFCTSVVDMHAVHLNITHFTSWDCCSFSLIHRVRIF 168
           KSCKPMLLYAQHFCTSVVDMHAVHLNITHFTSWDCCSFSLIHRVRIF
Sbjct: 121 KSCKPMLLYAQHFCTSVVDMHAVHLNITHFTSWDCCSFSLIHRVRIF 167

[Close]
BLAST of Csa4G099730 vs. NCBI nr
Match: gi|778691846|ref|XP_011653362.1| (PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 2.1e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
           MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120
           CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM
Sbjct: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120

Query: 121 KS 123
           KS
Sbjct: 121 KS 122

[Close]
BLAST of Csa4G099730 vs. NCBI nr
Match: gi|659111152|ref|XP_008455605.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 1.9e-57
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
           MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1   MFGSKFSIFGTGT-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120
           CSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVS+QIISSGAM
Sbjct: 61  CSLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSNQIISSGAM 120

Query: 121 KS 123
           KS
Sbjct: 121 KS 121

[Close]
BLAST of Csa4G099730 vs. NCBI nr
Match: gi|659111156|ref|XP_008455607.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 1.9e-57
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
           MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1   MFGSKFSIFGTGT-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120
           CSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVS+QIISSGAM
Sbjct: 61  CSLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSNQIISSGAM 120

Query: 121 KS 123
           KS
Sbjct: 121 KS 121

[Close]
BLAST of Csa4G099730 vs. NCBI nr
Match: gi|659111150|ref|XP_008455604.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 1.9e-57
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
           MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1   MFGSKFSIFGTGT-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61  CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSSQIISSGAM 120
           CSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVS+QIISSGAM
Sbjct: 61  CSLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRGEHIFMDCSVQSIVSNQIISSGAM 120

Query: 121 KS 123
           KS
Sbjct: 121 KS 121

The following BLAST results are available for this feature:
BLAST of Csa4G099730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVN2_CUCSA3.1e-91100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099730 PE=4 SV=1[more]
V7AM64_PHAVU1.7e-2856.25Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1[more]
V7AQ61_PHAVU1.7e-2856.25Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1[more]
D7T9G4_VITVI2.8e-2854.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02190 PE=4 SV=... [more]
B9HGM4_POPTR3.7e-2856.20Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07820g PE=4 SV=1[more]
BLAST of Csa4G099730 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G50120.11.1e-2854.10 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Csa4G099730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198512|gb|KGN53670.1|4.4e-91100.00hypothetical protein Csa_4G099730 [Cucumis sativus][more]
gi|778691846|ref|XP_011653362.1|2.1e-61100.00PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus][more]
gi|659111152|ref|XP_008455605.1|1.9e-5795.90PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo][more]
gi|659111156|ref|XP_008455607.1|1.9e-5795.90PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo][more]
gi|659111150|ref|XP_008455604.1|1.9e-5795.90PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042546 cell wall biogenesis
biological_process GO:0044036 cell wall macromolecule metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU160033cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G099730.1Csa4G099730.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU160033CU160033transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G099730MELO3C018973.2Melon (DHL92) v3.6.1cumedB308
Csa4G099730CSPI04G08890Wild cucumber (PI 183967)cpicuB182
Csa4G099730Cucsa.397740Cucumber (Gy14) v1cgycuB556
Csa4G099730CsGy4G008710Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G099730Cucurbita moschata (Rifu)cmocuB323
Csa4G099730Melon (DHL92) v3.5.1cumeB303
Csa4G099730Melon (DHL92) v3.5.1cumeB322
Csa4G099730Melon (DHL92) v3.6.1cumedB288