CSPI04G08890 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G08890
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
LocationChr4 : 6661116 .. 6662117 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAGGAACAAAGAAGTCATTATCTCGTCCTCGACCTCCTCTTGCGCGTCTCTAATCCGGTGACGCTCTGACGACATCACGACCCTTACGGCGACCCAACTTCTTCAACAACTTCTTCCAACGCAAGCGGTGACACACCCAGGTGACCGAAGCTGAAGCGTTCGATTTGAGAGAGGGCGTGGGTTCCTTGCGTTCTCCGGCGACTGTGGTGTAGACCCACGGCGACTCGAGGGTTCCAACGTCTATTCTGTAACGTGGGACGTCAGCCTTTGAACCCACGAACAGCGCGTGAATTTCCCTGAAACTCTCAAAAAAGACGTATAGGAAGTGGAAAAGTGGCATCTCAAGCAGAGGCCAATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTGGGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCATTTTATATGATATTTTTCTCAACCGTTGCCTTCTCCTTGTGTAATGTGTGATTGTTATTCGTCAAATTTGTTATTAGCTTTTATTCTGTTACGTTTTGTAATGTTTCCAGTAAACTCTCTATTTGACAGAGGGACTTTTCATTCTAAGGCAGTATTCCTTTTTGGAGCAATGAAAGGAAACCAGTACTTGTCACTTTGTAGAATTTGCATGGTTCTGCAAAATTTTTACTTATTCATCTACTGTCTTTTCAAAAATTGCATCGGTTTTCCTAGCTGATGTAGTTCAATTTCATGTCCTTTGTTTTGTCAGGTGAACACATTTTCATGGACTG

mRNA sequence

ATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTGGGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCATTTTATATGATATTTTTCTCAACCGTTGCCTTCTCCTTGTGTAA

Coding sequence (CDS)

ATGTTTGGATCTAGGTTTTCCATTTTTGGAACCGGTGCTGCTGCTGCTGATAAGGTCGAGAAGTCAGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGATGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGTTCCTCTGTCCCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTCGTTTTGAGATTATTGGGCTCCATAAGTTGGATGCTCAGTGGTTTAGCACTCAGAAGCCAATTCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCATTTTATATGATATTTTTCTCAACCGTTGCCTTCTCCTTGTGTAA
Homology
[Close]
BLAST of CSPI04G08890 vs. TrEMBL
Match: A0A0A0KVN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099730 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.4e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
          MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 98
          CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 97

[Close]
BLAST of CSPI04G08890 vs. TrEMBL
Match: V7AM64_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAA-AADKVEKSAKSE-----FFPGLKLRSDKDVYRPGDPVVVTIEICS 60
           MF  RFSIFG G + A D    ++K E       P LKL +D+ VYRPGDPVVVTI+I  
Sbjct: 1   MFSGRFSIFGGGDSHAVDNATSTSKGEGVAPVVSPTLKLETDRQVYRPGDPVVVTIQI-- 60

Query: 61  SVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGSKSIL 103
           S P   CS L+ERL FEI G+ KLD QWF+TQKP PGSKQRRG    L
Sbjct: 61  SNPSKGCSFLMERLGFEIRGIEKLDTQWFATQKPYPGSKQRRGEHVFL 106

[Close]
BLAST of CSPI04G08890 vs. TrEMBL
Match: V7AQ61_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 62/108 (57.41%), Postives = 71/108 (65.74%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAA-AADKVEKSAKSE-----FFPGLKLRSDKDVYRPGDPVVVTIEICS 60
           MF  RFSIFG G + A D    ++K E       P LKL +D+ VYRPGDPVVVTI+I  
Sbjct: 1   MFSGRFSIFGGGDSHAVDNATSTSKGEGVAPVVSPTLKLETDRQVYRPGDPVVVTIQI-- 60

Query: 61  SVPQLDCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGSKSIL 103
           S P   CS L+ERL FEI G+ KLD QWF+TQKP PGSKQRRG    L
Sbjct: 61  SNPSKGCSFLMERLGFEIRGIEKLDTQWFATQKPYPGSKQRRGEHVFL 106

[Close]
BLAST of CSPI04G08890 vs. TrEMBL
Match: V4TGT4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031151mg PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-20
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAA------ADKVEKSAKSE-FFPGLKLRSDKDVYRPGDPVVVTIEIC 60
           M G RFS+FG G         ++KV  ++K++   P LKL++DK+VY PGD V VT+EIC
Sbjct: 1   MLGGRFSLFGGGGGGGGGGSKSNKVANNSKNDGVLPTLKLQTDKNVYTPGDTVFVTVEIC 60

Query: 61  SSVPQLD----CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGSKSIL 103
           + +   D     SLLIE L FEI G+ KLD+QWF+TQKP+PGSKQRRG  + L
Sbjct: 61  NPLSSGDNAVLSSLLIESLSFEIKGIQKLDSQWFATQKPLPGSKQRRGEFAFL 113

[Close]
BLAST of CSPI04G08890 vs. TrEMBL
Match: W9RTV9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023890 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 1 

Query: 1   MFGSRFS-IFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQL 60
           M   RFS IFG G A A    K++K +  P LKL++DK+VY PGDPVVVT+EI +     
Sbjct: 101 MLPPRFSSIFGGGGANA----KASKRDVLPSLKLQTDKEVYGPGDPVVVTVEIGNPGGNS 160

Query: 61  DC--SLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 98
           D   SLL+ERL FEI G+ KLD QWF+TQKP+PGSKQRRG
Sbjct: 161 DSAFSLLVERLSFEIKGIEKLDTQWFATQKPLPGSKQRRG 196

[Close]
BLAST of CSPI04G08890 vs. TAIR10
Match: AT1G50120.1 (AT1G50120.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-21
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 1   MFGSRFSIFGTGAAAA--DKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQ 60
           M  SRFS  G G+++   D V  S  S+  P L +++DKDVYRPGD + VTIE+ +S   
Sbjct: 1   MLSSRFSFLGIGSSSEVNDSVGVSG-SKIKPSLSVQTDKDVYRPGDSIFVTIEVANSHDN 60

Query: 61  L-DCSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRGSKSIL 103
             + S+L+E+L FE+ GL KLD QWFSTQKP PGSK RRG    L
Sbjct: 61  ASNPSILVEKLSFEVKGLEKLDIQWFSTQKPSPGSKGRRGEHIFL 104

[Close]
BLAST of CSPI04G08890 vs. NCBI nr
Match: gi|778691846|ref|XP_011653362.1| (PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 9.1e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
          MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 98
          CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 97

[Close]
BLAST of CSPI04G08890 vs. NCBI nr
Match: gi|700198512|gb|KGN53670.1| (hypothetical protein Csa_4G099730 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 9.1e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
          MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 98
          CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 97

[Close]
BLAST of CSPI04G08890 vs. NCBI nr
Match: gi|659111152|ref|XP_008455605.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
          MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1  MFGSKFSIFGTGT-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 98
          CSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of CSPI04G08890 vs. NCBI nr
Match: gi|659111156|ref|XP_008455607.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
          MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1  MFGSKFSIFGTGT-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 98
          CSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

[Close]
BLAST of CSPI04G08890 vs. NCBI nr
Match: gi|659111150|ref|XP_008455604.1| (PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1 

Query: 1  MFGSRFSIFGTGAAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60
          MFGS+FSIFGTG  AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD
Sbjct: 1  MFGSKFSIFGTGT-AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVPQLD 60

Query: 61 CSLLIERLRFEIIGLHKLDAQWFSTQKPIPGSKQRRG 98
          CSLLIERLRFEIIGL KLDAQWFSTQKPIPGSKQRRG
Sbjct: 61 CSLLIERLRFEIIGLQKLDAQWFSTQKPIPGSKQRRG 96

The following BLAST results are available for this feature:
BLAST of CSPI04G08890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G08890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVN2_CUCSA6.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G099730 PE=4 SV=1[more]
V7AM64_PHAVU4.6e-2257.41Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1[more]
V7AQ61_PHAVU4.6e-2257.41Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G040700g PE=4 SV=1[more]
V4TGT4_9ROSI1.1e-2051.33Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031151mg PE=4 SV=1[more]
W9RTV9_9ROSA2.5e-2059.00Uncharacterized protein OS=Morus notabilis GN=L484_023890 PE=4 SV=1[more]
BLAST of CSPI04G08890 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G50120.14.5e-2151.43 FUNCTIONS IN: molecular_function unknown[more]
BLAST of CSPI04G08890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778691846|ref|XP_011653362.1|9.1e-48100.00PREDICTED: uncharacterized protein LOC101218523 isoform X1 [Cucumis sativus][more]
gi|700198512|gb|KGN53670.1|9.1e-48100.00hypothetical protein Csa_4G099730 [Cucumis sativus][more]
gi|659111152|ref|XP_008455605.1|2.8e-4495.88PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo][more]
gi|659111156|ref|XP_008455607.1|2.8e-4495.88PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo][more]
gi|659111150|ref|XP_008455604.1|2.8e-4495.88PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042546 cell wall biogenesis
biological_process GO:0044036 cell wall macromolecule metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08890.1CSPI04G08890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G08890Csa4G099730Cucumber (Chinese Long) v2cpicuB182
CSPI04G08890MELO3C018973Melon (DHL92) v3.5.1cpimeB320
CSPI04G08890MELO3C018973.2Melon (DHL92) v3.6.1cpimedB312
CSPI04G08890CsaV3_4G009100Cucumber (Chinese Long) v3cpicucB213
CSPI04G08890Cucsa.397740Cucumber (Gy14) v1cgycpiB585
CSPI04G08890CsGy4G008710Cucumber (Gy14) v2cgybcpiB168
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G08890Cucurbita moschata (Rifu)cmocpiB330
CSPI04G08890Melon (DHL92) v3.5.1cpimeB298
CSPI04G08890Melon (DHL92) v3.6.1cpimedB292