Csa4G047370 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G047370
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionZinc finger protein CONSTANS-like protein; contains IPR000315 (Zinc finger, B-box)
LocationChr4 : 3726679 .. 3730175 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGGCCATTCGTTTGTCCACTCCCCCACTCTCCCCCCTTTCTCTCTTACAAAACTTGTGGTTATCGACTTCGCTCCCTTCATTGAGTGCTAATTTGACAACAAAAAAAAAAAAAAAAAAAATCCATATCCTTTTCCACCCTCTTCTTCATTGGCTACCATGTGCTGTTCTTCACATTTATTATTGTTTTTGTTAACCCAATTGTCTTCTCGAATCTCCTTTTACCCTCTCAGGTCCCGCTAATCCAACCCCATTTCTTAATTTTCTCTGTTTCTTATTTTATATTTCTTTCAATTCCATTCTCTCTCTTACCCATCATCGTTTTCGTTGTCAAACGTCAAAACCCATCTCTAATGGAGCTTTAAATTGGTCTAGGAAACCTTAGGAACTTGTCGTTGTTTTCGTCGAGGGGGGTTTGGTTTATTATTTGGGGCAAATTCTTTTTTGGGTTTTGTTGTTGTTGATGATGATGATGATGATTTTGTGCGGTTGATTTTGTTTGGGGGGAGGAAATGAGAGTGGGGAGCTTCAATTATGAGAACACTTTGTGACGCTTGTGAAAAGGCTGCTGCTATTGTCTTTTGTGCTGCTGATGAAGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTATTATTCTCTTGACTTTCGTCTTCTTCTTCTTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCATTGTTTCTCTCTTAGATTTCTTCCCATGTTTCTTATGTTGGCTGATTTTGTTTAATCTTGATTGTGACCACTTCACCTGCGATGAGAATCTGGTGGATGATAATTGAATCATGGATTATTGGCTTTTTATAAATATGGGTTATTAGATGTATGCCTGCCTGCATTAGATAGTCGTAATGCTGGTGGATCTTATACTTAAGGGGTCTCTTACTCCTTGCAATTTGCTGCAAATTTTCACTACATTTGGCTGCTAGGAAAGAAAACTTTGGAAGGAAGACTTCTGTTCTGGTCAATTTGGCAAGAAATATGCTCTATATCTGCATTGCCCAATCGATGTTTACAGCTCAAAATTGCTCATGTTGACTGTCACACCAAGTGACTTTGAAGCATAACCCCAGCACTTATCGAGTTTATGTAAAACAAGTTCTTACTAGCTGTTGTGTTGGATTTTTAACACGAGGATTGTCAGCATGGATGATAATTTGATTGTTCCTTGACACTTTGTTTCGATGTTCGGACCTCCACTCACGTAGCTGATGGTTTATTGATTACCTTATGAAGAATAGTAGATTGATATTTGAGTGGTTGCATTATAATTCTCATTCATTTTTATGCCATCTTATTCTTTCCTGTTTGCTGAGTCCTTGTGTGTTTGGAAAAACTTTACTATCGTCCTCGACATTTTCATGTCTGTTTCAAGTAAAAGAACTGAATTTGAAGCTGACACCTTCACAAATTTTTTGGAAACTTGGATGATAGGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGGTATGGAGGTCTTTCCTTTTGTTTTTGCAATTGTTAGCTCTGTTATATATTGTGATTTGGGATGGTGTGGTTAACTTAGATAAATTTTATTTTTCGCCTTTGAAATTGTATGTAGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTTGAGGTTGGTTGATAGATTGCGATATGACCTCGCGTATTTTCCATATATTTTTGGATTGGAATTTTGAAGTTCTTATTCTTTTCCAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTCCTAATGAGATTGGTAAAGTACATAACCAGCCACCTCCGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCCAACGATGATGGTCATGCTGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCATAGGGTCCATGGCCAGGCTGCTAATAATCAGGTTCAAATGCTTTTACTCATCTCTTCCTTCAATAGTGTTCAACTGCTTATATGCACTGTGACATTGTATTCATTCGAAATTTCCAAAATGGTTCCAATTTCCTAATTTAATCGTCAACTCCTCATTACTATTGAGTGACAACTTGTATATCAGATGAAACAACCTCTTTGGAACAACTTTTCAAGGGCCTTGAAAAAGAGAGGTTAAAGTAGTGTTATTTTAAAAGAGTTTTTAAACACTCAAGAAAATTATTCCAAACCAACCTTAAACCAACTGATTGATTTACTCTGACAACTAATATCAAATGAATGGATCCATACCATGTCCTTGTCCTCCTTTGCTATAAAGTATATCATAACCGATCAACTACTGTGTTTATATGTATTAATGTTGCTAGTATAGTTGCCGCACAGATATTATAACCAACAAAAACCAAAACTTATCATCATGCTTGCTGGTATCCATATTAGCAAAGATATGTTTAGTCCAAAGATATTACATAAATTTCCAAGACATGTATACACGTGTAGTAATTAATGAACTCGGTTTCCTTTTCAGGATCTATGATCATGAACAAACAAAGCATGGATTTCGATCACACATCGACACCATTGCATTCATCAATCTTCCCCTTGCTTCTGATTCAAAGCAGAAGTTGTTAAGGTTGGTCGTAGTGGAAACCTACATTGTATGTTTCGGTGGGGGGGCGGGGGGGCGGTGTCGAGCTTGTTTAGTAATCTGTAGAGAAGTGGTTGGATAGATTTGAAAGCAAAGAAGATAAGATAAAAGCAGTGCTTTTTTAGTGAAATTGCAGGTGCTGTAATATTACAAAGTTTAGAGACACAGACCCAGCCAGCAGTTGTTGGGAGGGCAAGTTGGTGTAGGATACCCCTTCTTTTGTATTTGGTTGGAACAAAAACAAAAACGAAAAAA

mRNA sequence

ATGAGAACACTTTGTGACGCTTGTGAAAAGGCTGCTGCTATTGTCTTTTGTGCTGCTGATGAAGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTTGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTCCTAATGAGATTGGTAAAGTACATAACCAGCCACCTCCGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCCAACGATGATGGTCATGCTGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCATAGGGTCCATGGCCAGGCTGCTAATAATCAGGATCTATGA

Coding sequence (CDS)

ATGAGAACACTTTGTGACGCTTGTGAAAAGGCTGCTGCTATTGTCTTTTGTGCTGCTGATGAAGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTTGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTCCTAATGAGATTGGTAAAGTACATAACCAGCCACCTCCGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCCAACGATGATGGTCATGCTGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCATAGGGTCCATGGCCAGGCTGCTAATAATCAGGATCTATGA

Protein sequence

MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQAANNQDL*
Homology
[Close]
BLAST of Csa4G047370 vs. Swiss-Prot
Match: BBX19_ARATH (B-box zinc finger protein 19 OS=Arabidopsis thaliana GN=BBX19 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.4e-59
Identity = 117/186 (62.90%), Postives = 129/186 (69.35%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MR LCDACE AAAI+FCAADEAALCR CDEKVHMCNKLASRHVRVGLA PS+ P CDICE
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDM+VHVGGKRTH R+LLLRQR+EFPGDKP            
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKP------------ 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180
                K +N          DN QN  R+S     N + + + D +MIDLN  P RVH  +
Sbjct: 121 -----KENN--------TRDNLQN-QRVS--TNGNGEANGKIDDEMIDLNANPQRVHEPS 158

Query: 181 ANNQDL 187
           +NN  +
Sbjct: 181 SNNNGI 158

[Close]
BLAST of Csa4G047370 vs. Swiss-Prot
Match: BBX18_ARATH (B-box zinc finger protein 18 OS=Arabidopsis thaliana GN=BBX18 PE=1 SV=2)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-57
Identity = 112/185 (60.54%), Postives = 127/185 (68.65%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MR LCDACE AAAIVFCAADEAALC SCDEKVH CNKLASRH+RVGLA+PS+ P CDICE
Sbjct: 1   MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDM+VHVGGKRTH+R+LLLRQR+EFPGDKP + D        
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHAD-------- 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180
             ++G                     + S  R    +G+ + D  MIDLN  P RVH   
Sbjct: 121 --QLG-----------------LRCQKASSGRGQESNGNGDHDHNMIDLNSNPQRVHEPG 158

Query: 181 ANNQD 186
           ++NQ+
Sbjct: 181 SHNQE 158

[Close]
BLAST of Csa4G047370 vs. Swiss-Prot
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-23
Identity = 64/176 (36.36%), Postives = 90/176 (51.14%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGL-ANPSDVPRCDIC 60
           M+  C+ CE A A V C ADEAALC +CDEK+H  NKLA +H RV L A+ S +P+CDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDMIVHVGGKR--THKRYLL--LRQRVEFPGDKPINLDDPS 120
           + A  FF+C  D + LC +CD+ +H        H+R+LL  ++  +E     P     P+
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPT 120

Query: 121 PHSKVPNEIGKVHNQPPPHKVTV-----EDNQQNHHRLSPVREANDDGHAETDTKM 167
              K       V + P P K+       +  Q+    + P  + ND    +T TK+
Sbjct: 121 NDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTKVND----QTSTKL 172

[Close]
BLAST of Csa4G047370 vs. Swiss-Prot
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 65/174 (37.36%), Postives = 84/174 (48.28%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDIC 60
           M+  CD CEKA A V C ADEAALC  CD ++H  NKLAS+H R+ L + S   PRCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDMIVHVGGKRT--HKRYLLLRQRVEFPG---DKPINLDDP 120
           +   AF +C  D + LC  CD  +HV   R+  H+R+L    +V        K I  + P
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQP 120

Query: 121 SPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMID 169
            P +          NQ P    +    QQ     +P+  A DD    +D +  D
Sbjct: 121 EPSNNQQKA-----NQIPAK--STSQQQQQPSSATPLPWAVDDFFHFSDIESTD 167

[Close]
BLAST of Csa4G047370 vs. Swiss-Prot
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-21
Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS----DVPRC 60
           M+  CD C+K  A VFC ADEA+LC  CD +VH  NKLAS+H+R  L  PS      P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRT--HKRYLLLRQRVEFPGD--KPINLD 120
           DIC++  A  +C+ D + LC  CD  +H   + T  H R+LL   ++       KP +  
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 121 DPSPHSKVPNEI-GKVHNQPPPHKVTVEDNQQNHHRLSPVREAN 156
             S  S     + G   + PPP K  +    Q+ +++ P  + N
Sbjct: 121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQS-NKIQPFSKIN 163

[Close]
BLAST of Csa4G047370 vs. TrEMBL
Match: A0A0A0KUM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G047370 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 5.2e-108
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE
Sbjct: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180
           PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA
Sbjct: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180

Query: 181 ANNQDL 187
           ANNQDL
Sbjct: 181 ANNQDL 186

[Close]
BLAST of Csa4G047370 vs. TrEMBL
Match: A0A061DFT8_THECC (B-box type zinc finger family protein OS=Theobroma cacao GN=TCM_000244 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-77
Identity = 144/187 (77.01%), Postives = 160/187 (85.56%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD+CE AAAIVFCAADEAALCR+CDEKVHMCNKLASRHVRVGLANPSDVP CDICE
Sbjct: 1   MRTLCDSCESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLANPSDVPLCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTH RYLL RQRVEFPGDKP N++DP+     
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHARYLLFRQRVEFPGDKPGNVEDPASQPVD 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVR--EANDDGHAETDTKMIDLNMKPHRVHG 180
           P E  +  NQP   K TV ++QQN H++S V+  +AN DGH + DTKMIDLNMKPHR+HG
Sbjct: 121 PGETRRGQNQPA--KPTVGESQQN-HKVSSVQLVDANADGHVKMDTKMIDLNMKPHRIHG 180

Query: 181 QAANNQD 186
           QA+NNQ+
Sbjct: 181 QASNNQE 184

[Close]
BLAST of Csa4G047370 vs. TrEMBL
Match: D7SP26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03030 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.6e-75
Identity = 144/186 (77.42%), Postives = 157/186 (84.41%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD CE AAAI+FCAADEAALCR CDEKVHMCNKLASRHVRVGLA+PSDVPRCDICE
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCRVCDEKVHMCNKLASRHVRVGLADPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDG+SLCLQCDMIVHVGGKRTH RYLLLRQRVEFPGDK  NL+DP+     
Sbjct: 61  NAPAFFYCEIDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKSGNLEDPALLPME 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPV--REANDDGHAETDTKMIDLNMKPHRVHG 180
           P E  +  NQ    K TV +NQQN  R+SPV   +AN DGHA+ DTK+IDLNMKPHR+HG
Sbjct: 121 PGENRRGQNQ--SSKPTVVENQQN-RRVSPVPTMDANADGHAKMDTKLIDLNMKPHRIHG 180

Query: 181 QAANNQ 185
           QA+NNQ
Sbjct: 181 QASNNQ 183

[Close]
BLAST of Csa4G047370 vs. TrEMBL
Match: A0A0D2PC49_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G196900 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.2e-74
Identity = 139/186 (74.73%), Postives = 155/186 (83.33%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRT+CDACE AAAIVFCAADEAALC +CDEKVH+CNKLASRHVRVGLANPSDVPRCDICE
Sbjct: 1   MRTICDACESAAAIVFCAADEAALCSACDEKVHLCNKLASRHVRVGLANPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDG+SLCLQCDMIVHVGGKRTH RYL+LRQRVEFPG KP N++DP+     
Sbjct: 61  NAPAFFYCEIDGTSLCLQCDMIVHVGGKRTHGRYLVLRQRVEFPGYKPGNIEDPASQPLD 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVR-EANDDGHAETDTKMIDLNMKPHRVHGQ 180
           P+E  +  N     K TV +NQQN      +R +AN DGH ET TKMIDLNMKPHR+HGQ
Sbjct: 121 PSETMRGQNHAA--KRTVGENQQNDKACPVLRMDANADGHLETGTKMIDLNMKPHRIHGQ 180

Query: 181 AANNQD 186
           A+NNQ+
Sbjct: 181 ASNNQE 184

[Close]
BLAST of Csa4G047370 vs. TrEMBL
Match: D9ZIX1_MALDO (COL domain class transcription factor OS=Malus domestica GN=COL5 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.8e-74
Identity = 137/187 (73.26%), Postives = 158/187 (84.49%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD+CE AAAIVFCAADEAALCR+CDEKVHMCNKLASRHVRVGLA PS+VPRCDICE
Sbjct: 1   MRTLCDSCESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLAAPSEVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFF CEIDGSSLCLQCD+IVHVGGKR H RYL+LRQRVEFPGDKP N++DP+     
Sbjct: 61  NAPAFFCCEIDGSSLCLQCDLIVHVGGKRMHGRYLVLRQRVEFPGDKPGNIEDPASQPTD 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVR--EANDDGHAETDTKMIDLNMKPHRVHG 180
           P E  +V  QP P ++T+ +N QN HR+SP+R  +AN D H + D K+IDLNMKPHR+HG
Sbjct: 121 PGESRRV-QQPHPPRMTIGENLQN-HRVSPIRASDANADEHVKMDNKLIDLNMKPHRMHG 180

Query: 181 QAANNQD 186
           QA+N +D
Sbjct: 181 QASNKED 185

[Close]
BLAST of Csa4G047370 vs. TAIR10
Match: AT2G21320.1 (AT2G21320.1 B-box zinc finger family protein)

HSP 1 Score: 223.8 bits (569), Expect = 8.9e-59
Identity = 112/185 (60.54%), Postives = 127/185 (68.65%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MR LCDACE AAAIVFCAADEAALC SCDEKVH CNKLASRH+RVGLA+PS+ P CDICE
Sbjct: 1   MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDM+VHVGGKRTH+R+LLLRQR+EFPGDKP + D        
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHAD-------- 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180
             ++G                     + S  R    +G+ + D  MIDLN  P RVH   
Sbjct: 121 --QLG-----------------LRCQKASSGRGQESNGNGDHDHNMIDLNSNPQRVHEPG 158

Query: 181 ANNQD 186
           ++NQ+
Sbjct: 181 SHNQE 158

[Close]
BLAST of Csa4G047370 vs. TAIR10
Match: AT4G38960.3 (AT4G38960.3 B-box type zinc finger family protein)

HSP 1 Score: 207.6 bits (527), Expect = 6.6e-54
Identity = 117/229 (51.09%), Postives = 129/229 (56.33%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEK----------------------------- 60
           MR LCDACE AAAI+FCAADEAALCR CDEK                             
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKALHMRLDISKCSESVKRVQIVETSSLIWW 60

Query: 61  --------------VHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCL 120
                         VHMCNKLASRHVRVGLA PS+ P CDICENAPAFFYCEIDGSSLCL
Sbjct: 61  IKMGTFCLQSLHLVVHMCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCL 120

Query: 121 QCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVT 180
           QCDM+VHVGGKRTH R+LLLRQR+EFPGDKP                 K +N        
Sbjct: 121 QCDMVVHVGGKRTHGRFLLLRQRIEFPGDKP-----------------KENN-------- 180

Query: 181 VEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQAANNQDL 187
             DN QN  R+S     N + + + D +MIDLN  P RVH  ++NN  +
Sbjct: 181 TRDNLQN-QRVS--TNGNGEANGKIDDEMIDLNANPQRVHEPSSNNNGI 201

[Close]
BLAST of Csa4G047370 vs. TAIR10
Match: AT1G78600.2 (AT1G78600.2 light-regulated zinc finger protein 1)

HSP 1 Score: 111.3 bits (277), Expect = 6.5e-25
Identity = 64/176 (36.36%), Postives = 90/176 (51.14%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGL-ANPSDVPRCDIC 60
           M+  C+ CE A A V C ADEAALC +CDEK+H  NKLA +H RV L A+ S +P+CDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDMIVHVGGKR--THKRYLL--LRQRVEFPGDKPINLDDPS 120
           + A  FF+C  D + LC +CD+ +H        H+R+LL  ++  +E     P     P+
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPT 120

Query: 121 PHSKVPNEIGKVHNQPPPHKVTV-----EDNQQNHHRLSPVREANDDGHAETDTKM 167
              K       V + P P K+       +  Q+    + P  + ND    +T TK+
Sbjct: 121 NDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTKVND----QTSTKL 172

[Close]
BLAST of Csa4G047370 vs. TAIR10
Match: AT1G06040.1 (AT1G06040.1 B-box zinc finger family protein)

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-23
Identity = 65/174 (37.36%), Postives = 84/174 (48.28%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDIC 60
           M+  CD CEKA A V C ADEAALC  CD ++H  NKLAS+H R+ L + S   PRCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  ENAPAFFYCEIDGSSLCLQCDMIVHVGGKRT--HKRYLLLRQRVEFPG---DKPINLDDP 120
           +   AF +C  D + LC  CD  +HV   R+  H+R+L    +V        K I  + P
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQP 120

Query: 121 SPHSKVPNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMID 169
            P +          NQ P    +    QQ     +P+  A DD    +D +  D
Sbjct: 121 EPSNNQQKA-----NQIPAK--STSQQQQQPSSATPLPWAVDDFFHFSDIESTD 167

[Close]
BLAST of Csa4G047370 vs. TAIR10
Match: AT1G75540.1 (AT1G75540.1 salt tolerance homolog2)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-22
Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS----DVPRC 60
           M+  CD C+K  A VFC ADEA+LC  CD +VH  NKLAS+H+R  L  PS      P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRT--HKRYLLLRQRVEFPGD--KPINLD 120
           DIC++  A  +C+ D + LC  CD  +H   + T  H R+LL   ++       KP +  
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 121 DPSPHSKVPNEI-GKVHNQPPPHKVTVEDNQQNHHRLSPVREAN 156
             S  S     + G   + PPP K  +    Q+ +++ P  + N
Sbjct: 121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQS-NKIQPFSKIN 163

[Close]
BLAST of Csa4G047370 vs. NCBI nr
Match: gi|449457560|ref|XP_004146516.1| (PREDICTED: B-box zinc finger protein 18-like [Cucumis sativus])

HSP 1 Score: 398.3 bits (1022), Expect = 7.5e-108
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE
Sbjct: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180
           PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA
Sbjct: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180

Query: 181 ANNQDL 187
           ANNQDL
Sbjct: 181 ANNQDL 186

[Close]
BLAST of Csa4G047370 vs. NCBI nr
Match: gi|659102302|ref|XP_008452057.1| (PREDICTED: probable salt tolerance-like protein At1g78600 [Cucumis melo])

HSP 1 Score: 387.9 bits (995), Expect = 1.0e-104
Identity = 182/186 (97.85%), Postives = 182/186 (97.85%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCDACE AAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVP CDICE
Sbjct: 1   MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPCCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSP SKV
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPQSKV 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180
           PNEIGKVHNQPPPHKVTVED QQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA
Sbjct: 121 PNEIGKVHNQPPPHKVTVEDTQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQA 180

Query: 181 ANNQDL 187
           ANNQDL
Sbjct: 181 ANNQDL 186

[Close]
BLAST of Csa4G047370 vs. NCBI nr
Match: gi|645273266|ref|XP_008241795.1| (PREDICTED: salt tolerance protein-like [Prunus mume])

HSP 1 Score: 296.6 bits (758), Expect = 3.1e-77
Identity = 141/187 (75.40%), Postives = 161/187 (86.10%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD+CE AAAIVFCAADEAALC +CDEKVHMCNKLASRHVRVGLA PS+VPRCDICE
Sbjct: 1   MRTLCDSCESAAAIVFCAADEAALCPACDEKVHMCNKLASRHVRVGLATPSEVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDM+VHVGGKRTH RYL+LRQRVEFPGDKP N+DDP+     
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRYLVLRQRVEFPGDKPGNVDDPASQPID 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVR--EANDDGHAETDTKMIDLNMKPHRVHG 180
           P E  +V +QPP  ++T+ +NQQN HR SP+R  +AN DGH + DTK+IDLNMKPHR+H 
Sbjct: 121 PGETRRVQHQPP--RMTIGENQQN-HRASPIRISDANADGHVKMDTKLIDLNMKPHRMHE 180

Query: 181 QAANNQD 186
           QA+N +D
Sbjct: 181 QASNKED 184

[Close]
BLAST of Csa4G047370 vs. NCBI nr
Match: gi|590702956|ref|XP_007046745.1| (B-box type zinc finger family protein [Theobroma cacao])

HSP 1 Score: 296.6 bits (758), Expect = 3.1e-77
Identity = 144/187 (77.01%), Postives = 160/187 (85.56%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD+CE AAAIVFCAADEAALCR+CDEKVHMCNKLASRHVRVGLANPSDVP CDICE
Sbjct: 1   MRTLCDSCESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLANPSDVPLCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTH RYLL RQRVEFPGDKP N++DP+     
Sbjct: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHARYLLFRQRVEFPGDKPGNVEDPASQPVD 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPVR--EANDDGHAETDTKMIDLNMKPHRVHG 180
           P E  +  NQP   K TV ++QQN H++S V+  +AN DGH + DTKMIDLNMKPHR+HG
Sbjct: 121 PGETRRGQNQPA--KPTVGESQQN-HKVSSVQLVDANADGHVKMDTKMIDLNMKPHRIHG 180

Query: 181 QAANNQD 186
           QA+NNQ+
Sbjct: 181 QASNNQE 184

[Close]
BLAST of Csa4G047370 vs. NCBI nr
Match: gi|731386899|ref|XP_010649070.1| (PREDICTED: B-box zinc finger protein 19-like isoform X1 [Vitis vinifera])

HSP 1 Score: 290.4 bits (742), Expect = 2.2e-75
Identity = 144/187 (77.01%), Postives = 158/187 (84.49%), Query Frame = 1 

Query: 1   MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICE 60
           MRTLCD CE AAAI+FCAADEAALCR CDEKVHMCNKLASRHVRVGLA+PSDVPRCDICE
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCRVCDEKVHMCNKLASRHVRVGLADPSDVPRCDICE 60

Query: 61  NAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKV 120
           NAPAFFYCEIDG+SLCLQCDMIVHVGGKRTH RYLLLRQRVEFPGDK  NL+DP+     
Sbjct: 61  NAPAFFYCEIDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKSGNLEDPALLPME 120

Query: 121 PNEIGKVHNQPPPHKVTVEDNQQNHHRLSPV--REANDDGHAETDTKMIDLNMKPHRVHG 180
           P E  +  NQ    K TV +NQQN  R+SPV   +AN DGHA+ DTK+IDLNMKPHR+HG
Sbjct: 121 PGENRRGQNQ--SSKPTVVENQQN-RRVSPVPTMDANADGHAKMDTKLIDLNMKPHRIHG 180

Query: 181 QAANNQD 186
           QA+NNQ+
Sbjct: 181 QASNNQE 184

The following BLAST results are available for this feature:
BLAST of Csa4G047370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BBX19_ARATH6.4e-5962.90B-box zinc finger protein 19 OS=Arabidopsis thaliana GN=BBX19 PE=2 SV=1[more]
BBX18_ARATH1.6e-5760.54B-box zinc finger protein 18 OS=Arabidopsis thaliana GN=BBX18 PE=1 SV=2[more]
BBX22_ARATH1.1e-2336.36B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2[more]
BBX24_ARATH1.4e-2137.36B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1[more]
BBX21_ARATH3.1e-2135.98B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1[more]
BLAST of Csa4G047370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUM1_CUCSA5.2e-108100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G047370 PE=4 SV=1[more]
A0A061DFT8_THECC2.1e-7777.01B-box type zinc finger family protein OS=Theobroma cacao GN=TCM_000244 PE=4 SV=1[more]
D7SP26_VITVI2.6e-7577.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03030 PE=4 SV=... [more]
A0A0D2PC49_GOSRA2.2e-7474.73Uncharacterized protein OS=Gossypium raimondii GN=B456_007G196900 PE=4 SV=1[more]
D9ZIX1_MALDO3.8e-7473.26COL domain class transcription factor OS=Malus domestica GN=COL5 PE=2 SV=1[more]
BLAST of Csa4G047370 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21320.18.9e-5960.54 B-box zinc finger family protein[more]
AT4G38960.36.6e-5451.09 B-box type zinc finger family protein[more]
AT1G78600.26.5e-2536.36 light-regulated zinc finger protein 1[more]
AT1G06040.17.9e-2337.36 B-box zinc finger family protein[more]
AT1G75540.11.8e-2235.98 salt tolerance homolog2[more]
BLAST of Csa4G047370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457560|ref|XP_004146516.1|7.5e-108100.00PREDICTED: B-box zinc finger protein 18-like [Cucumis sativus][more]
gi|659102302|ref|XP_008452057.1|1.0e-10497.85PREDICTED: probable salt tolerance-like protein At1g78600 [Cucumis melo][more]
gi|645273266|ref|XP_008241795.1|3.1e-7775.40PREDICTED: salt tolerance protein-like [Prunus mume][more]
gi|590702956|ref|XP_007046745.1|3.1e-7777.01B-box type zinc finger family protein [Theobroma cacao][more]
gi|731386899|ref|XP_010649070.1|2.2e-7577.01PREDICTED: B-box zinc finger protein 19-like isoform X1 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006508 proteolysis
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008236 serine-type peptidase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU113732cucumber EST collection version 3.0transcribed_cluster
CU119428cucumber EST collection version 3.0transcribed_cluster
CU161878cucumber EST collection version 3.0transcribed_cluster
CU172231cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G047370.1Csa4G047370.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU113732CU113732transcribed_cluster
CU161878CU161878transcribed_cluster
CU172231CU172231transcribed_cluster
CU119428CU119428transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 52..92
score: 1.1E-6coord: 3..42
score: 7.
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 51..96
score: 5.1E-11coord: 1..47
score: 5.
IPR000315B-box-type zinc fingerPROFILEPS50119ZF_BBOXcoord: 1..47
score: 10.31coord: 51..96
score: 9
NoneNo IPR availablePANTHERPTHR31832FAMILY NOT NAMEDcoord: 1..184
score: 2.9E
NoneNo IPR availablePANTHERPTHR31832:SF5B-BOX TYPE ZINC FINGER-CONTAINING PROTEINcoord: 1..184
score: 2.9E