Csa4G003090 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G003090
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 620218 .. 620690 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCTGACGTCGGAGATGGAGAGAGAGAGTGGTGGGTGTGGGGGATGTGTGGATGAGGTAAGGGAAGAGGAAATTATTAAGAAGACGCCAGAAGGACGACATGACGTTGGTGGGTCTGTTACAGTGAATTTGAATAATGATGTTTGGGAAGAAGACGAGATGTCGTTGGACTTGGATGAGTTGTTGACAAGCGTGGAAGACTACGAGGATGAAATTCATAAGTTCATCACAACTGGCACGTGCAAAAGCAACACCGATCATGTCTCCATTGCTCCGGCAGAGATGGAGGTGGGCGGTGAGTGTAGTTCCATAAGCAGCTCATCCTTGATGAGTCTTGACAGTCCATGGAACTGGGAAAGCTTCGCGGGGGACATAGAATGGGATGCCGGAGAAGATTTCGGAGGTGGGGTTGGGATTGCGGTTGCGGAATCGGAATCGGAGGCGGTGATTTCTTGGCTTTTGTCATGATGATA

mRNA sequence

ATGGAGAGAGAGAGTGGTGGGTGTGGGGGATGTGTGGATGAGGTAAGGGAAGAGGAAATTATTAAGAAGACGCCAGAAGGACGACATGACGTTGGTGGGTCTGTTACAGTGAATTTGAATAATGATGTTTGGGAAGAAGACGAGATGTCGTTGGACTTGGATGAGTTGTTGACAAGCGTGGAAGACTACGAGGATGAAATTCATAAGTTCATCACAACTGGCACGTGCAAAAGCAACACCGATCATGTCTCCATTGCTCCGGCAGAGATGGAGGTGGGCGGTGAGTGTAGTTCCATAAGCAGCTCATCCTTGATGAGTCTTGACAGTCCATGGAACTGGGAAAGCTTCGCGGGGGACATAGAATGGGATGCCGGAGAAGATTTCGGAGGTGGGGTTGGGATTGCGGTTGCGGAATCGGAATCGGAGGCGGTGATTTCTTGGCTTTTGTCATGA

Coding sequence (CDS)

ATGGAGAGAGAGAGTGGTGGGTGTGGGGGATGTGTGGATGAGGTAAGGGAAGAGGAAATTATTAAGAAGACGCCAGAAGGACGACATGACGTTGGTGGGTCTGTTACAGTGAATTTGAATAATGATGTTTGGGAAGAAGACGAGATGTCGTTGGACTTGGATGAGTTGTTGACAAGCGTGGAAGACTACGAGGATGAAATTCATAAGTTCATCACAACTGGCACGTGCAAAAGCAACACCGATCATGTCTCCATTGCTCCGGCAGAGATGGAGGTGGGCGGTGAGTGTAGTTCCATAAGCAGCTCATCCTTGATGAGTCTTGACAGTCCATGGAACTGGGAAAGCTTCGCGGGGGACATAGAATGGGATGCCGGAGAAGATTTCGGAGGTGGGGTTGGGATTGCGGTTGCGGAATCGGAATCGGAGGCGGTGATTTCTTGGCTTTTGTCATGA

Protein sequence

MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSVEDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDIEWDAGEDFGGGVGIAVAESESEAVISWLLS*

Homology

[Close]

BLAST of Csa4G003090 vs. TrEMBL
Match: A0A0A0KTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003090 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.2e-81
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60
           MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV
Sbjct: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60

Query: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120
           EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI
Sbjct: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120

Query: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           EWDAGEDFGGGVGIAVAESESEAVISWLLS
Sbjct: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 150

[Close]

BLAST of Csa4G003090 vs. NCBI nr
Match: gi|700197685|gb|KGN52843.1| (hypothetical protein Csa_4G003090 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-81
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60
           MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV
Sbjct: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60

Query: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120
           EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI
Sbjct: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120

Query: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           EWDAGEDFGGGVGIAVAESESEAVISWLLS
Sbjct: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 150

[Close]

BLAST of Csa4G003090 vs. NCBI nr
Match: gi|778689398|ref|XP_004152356.2| (PREDICTED: myb-related protein P-like [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-81
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60
           MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV
Sbjct: 164 MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 223

Query: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120
           EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI
Sbjct: 224 EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 283

Query: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           EWDAGEDFGGGVGIAVAESESEAVISWLLS
Sbjct: 284 EWDAGEDFGGGVGIAVAESESEAVISWLLS 313

[Close]

BLAST of Csa4G003090 vs. NCBI nr
Match: gi|659108626|ref|XP_008454301.1| (PREDICTED: myb-related protein 308-like [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 5.6e-53
Identity = 115/155 (74.19%), Postives = 127/155 (81.94%), Query Frame = 1


Query: 5   SGGCG-GCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV--- 64
           SG CG GCVD++REEE I K PEGRHDVGGS T+N +NDV EEDEMSLDLDELLT+V   
Sbjct: 175 SGVCGRGCVDDLREEETINKWPEGRHDVGGSETLNYSNDVLEEDEMSLDLDELLTNVEVE 234

Query: 65  --EDYEDEIHKFITTGTCKSNTDHVSIAP---AEMEVGGECSSISSSSLMSLDSPWNWES 124
             EDYEDEIHKF TTGTC SNTD+VS+AP   AEME+GG+CS ISSSS  SL+SPWNWES
Sbjct: 235 WDEDYEDEIHKFNTTGTCGSNTDNVSVAPAGAAEMELGGDCSPISSSS-FSLNSPWNWES 294

Query: 125 FAGDIEWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           FAGDIEWDAGE+FGG V      +ESEAVISWLLS
Sbjct: 295 FAGDIEWDAGENFGGAV------AESEAVISWLLS 322

The following BLAST results are available for this feature:

BLAST of Csa4G003090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTE8_CUCSA	1.2e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003090 PE=4 SV=1	[more]

BLAST of Csa4G003090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197685\|gb\|KGN52843.1\|	1.7e-81	100.00	hypothetical protein Csa_4G003090 [Cucumis sativus]	[more]
gi\|778689398\|ref\|XP_004152356.2\|	1.7e-81	100.00	PREDICTED: myb-related protein P-like [Cucumis sativus]	[more]
gi\|659108626\|ref\|XP_008454301.1\|	5.6e-53	74.19	PREDICTED: myb-related protein 308-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU109156	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G003090.1	Csa4G003090.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU109156	CU109156	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 46..66 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G003090	Cla017373	Watermelon (97103) v1	cuwmB290
Csa4G003090	MELO3C017925	Melon (DHL92) v3.5.1	cumeB312
Csa4G003090	ClCG10G011260	Watermelon (Charleston Gray)	cuwcgB271
Csa4G003090	Lsi03G011010	Bottle gourd (USVL1VR-Ls)	culsiB275
Csa4G003090	MELO3C017925.2	Melon (DHL92) v3.6.1	cumedB297
Csa4G003090	Cla97C10G194150	Watermelon (97103) v2	cuwmbB271
Csa4G003090	Bhi11G001051	Wax gourd	cuwgoB356
Csa4G003090	CSPI04G01150	Wild cucumber (PI 183967)	cpicuB182
Csa4G003090	Cucsa.096800	Cucumber (Gy14) v1	cgycuB102
Csa4G003090	CmaCh14G009250	Cucurbita maxima (Rimu)	cmacuB261
Csa4G003090	CmoCh14G009510	Cucurbita moschata (Rifu)	cmocuB246
Csa4G003090	CmoCh01G003060	Cucurbita moschata (Rifu)	cmocuB464
Csa4G003090	Cp4.1LG03g05230	Cucurbita pepo (Zucchini)	cpecuB616
Csa4G003090	CsGy4G001040	Cucumber (Gy14) v2	cgybcuB165
Csa4G003090	Carg07389	Silver-seed gourd	carcuB0782
Csa4G003090	Carg11153	Silver-seed gourd	carcuB0832

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G003090	Cucumber (Gy14) v2	cgybcuB314
Csa4G003090	Melon (DHL92) v3.6.1	cumedB268
Csa4G003090	Silver-seed gourd	carcuB0116
Csa4G003090	Watermelon (97103) v2	cuwmbB332
Csa4G003090	Cucumber (Chinese Long) v2	cucuB149
Csa4G003090	Cucumber (Gy14) v1	cgycuB311
Csa4G003090	Cucurbita maxima (Rimu)	cmacuB365
Csa4G003090	Cucurbita maxima (Rimu)	cmacuB475
Csa4G003090	Cucurbita maxima (Rimu)	cmacuB894
Csa4G003090	Cucurbita moschata (Rifu)	cmocuB356
Csa4G003090	Cucurbita moschata (Rifu)	cmocuB879
Csa4G003090	Melon (DHL92) v3.5.1	cumeB283
Csa4G003090	Watermelon (Charleston Gray)	cuwcgB269
Csa4G003090	Watermelon (97103) v1	cuwmB287
Csa4G003090	Cucurbita pepo (Zucchini)	cpecuB139
Csa4G003090	Cucurbita pepo (Zucchini)	cpecuB315
Csa4G003090	Cucurbita pepo (Zucchini)	cpecuB566
Csa4G003090	Bottle gourd (USVL1VR-Ls)	culsiB267