CsGy4G001040 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G001040
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	myb-related protein 308-like
Location	Chr4 : 635198 .. 635650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGAGAGTGGTGGGTGTGGGGGATGTGTGGATGAGGTAAGGGAAGAGGAAATTATTAAGAAGACGCCAGAAGGACGACATGACGTTGGTGGGTCTGTTACAGTGAATTTGAATAATGATGTTTGGGAAGAAGACGAGATGTCGTTGGACTTGGATGAGTTGTTGACAAGCGTGGAAGACTACGAGGATGAAATTCATAAGTTCATCACAACTGGCACGTGCAAAAGCAACACCGATCATGTCTCCATTGCTCCGGCAGAGATGGAGGTGGGCGGTGAGTGTAGTTCCATAAGCAGCTCATCCTTGATGAGTCTTGACAGTCCATGGAACTGGGAAAGCTTCGCGGGGGACATAGAATGGGATGCCGGAGAAGATTTCGGAGGTGGGGTTGGGATTGCGGTTGCGGAATCGGAATCGGAGGCGGTGATTTCTTGGCTTTTGTCATGA

mRNA sequence

ATGGAGAGAGAGAGTGGTGGGTGTGGGGGATGTGTGGATGAGGTAAGGGAAGAGGAAATTATTAAGAAGACGCCAGAAGGACGACATGACGTTGGTGGGTCTGTTACAGTGAATTTGAATAATGATGTTTGGGAAGAAGACGAGATGTCGTTGGACTTGGATGAGTTGTTGACAAGCGTGGAAGACTACGAGGATGAAATTCATAAGTTCATCACAACTGGCACGTGCAAAAGCAACACCGATCATGTCTCCATTGCTCCGGCAGAGATGGAGGTGGGCGGTGAGTGTAGTTCCATAAGCAGCTCATCCTTGATGAGTCTTGACAGTCCATGGAACTGGGAAAGCTTCGCGGGGGACATAGAATGGGATGCCGGAGAAGATTTCGGAGGTGGGGTTGGGATTGCGGTTGCGGAATCGGAATCGGAGGCGGTGATTTCTTGGCTTTTGTCATGA

Coding sequence (CDS)

ATGGAGAGAGAGAGTGGTGGGTGTGGGGGATGTGTGGATGAGGTAAGGGAAGAGGAAATTATTAAGAAGACGCCAGAAGGACGACATGACGTTGGTGGGTCTGTTACAGTGAATTTGAATAATGATGTTTGGGAAGAAGACGAGATGTCGTTGGACTTGGATGAGTTGTTGACAAGCGTGGAAGACTACGAGGATGAAATTCATAAGTTCATCACAACTGGCACGTGCAAAAGCAACACCGATCATGTCTCCATTGCTCCGGCAGAGATGGAGGTGGGCGGTGAGTGTAGTTCCATAAGCAGCTCATCCTTGATGAGTCTTGACAGTCCATGGAACTGGGAAAGCTTCGCGGGGGACATAGAATGGGATGCCGGAGAAGATTTCGGAGGTGGGGTTGGGATTGCGGTTGCGGAATCGGAATCGGAGGCGGTGATTTCTTGGCTTTTGTCATGA

Protein sequence

MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSVEDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDIEWDAGEDFGGGVGIAVAESESEAVISWLLS

Homology

[Close]

BLAST of CsGy4G001040 vs. NCBI nr
Match: XP_004152356.2 (PREDICTED: myb-related protein P-like [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 6.7e-79
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60
           MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV
Sbjct: 164 MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 223

Query: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120
           EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI
Sbjct: 224 EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 283

Query: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           EWDAGEDFGGGVGIAVAESESEAVISWLLS
Sbjct: 284 EWDAGEDFGGGVGIAVAESESEAVISWLLS 313

[Close]

BLAST of CsGy4G001040 vs. NCBI nr
Match: KGN52843.1 (hypothetical protein Csa_4G003090 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 6.7e-79
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60
           MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV
Sbjct: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60

Query: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120
           EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI
Sbjct: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120

Query: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           EWDAGEDFGGGVGIAVAESESEAVISWLLS
Sbjct: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 150

[Close]

BLAST of CsGy4G001040 vs. NCBI nr
Match: XP_008454301.1 (PREDICTED: myb-related protein 308-like [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 115/155 (74.19%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 5   SGGCG-GCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV--- 64
           SG CG GCVD++REEE I K PEGRHDVGGS T+N +NDV EEDEMSLDLDELLT+V   
Sbjct: 175 SGVCGRGCVDDLREEETINKWPEGRHDVGGSETLNYSNDVLEEDEMSLDLDELLTNVEVE 234

Query: 65  --EDYEDEIHKFITTGTCKSNTDHVSIAP---AEMEVGGECSSISSSSLMSLDSPWNWES 124
             EDYEDEIHKF TTGTC SNTD+VS+AP   AEME+GG+CS ISSSS  SL+SPWNWES
Sbjct: 235 WDEDYEDEIHKFNTTGTCGSNTDNVSVAPAGAAEMELGGDCSPISSSS-FSLNSPWNWES 294

Query: 125 FAGDIEWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           FAGDIEWDAGE+FGG V      +ESEAVISWLLS
Sbjct: 295 FAGDIEWDAGENFGGAV------AESEAVISWLLS 322

[Close]

BLAST of CsGy4G001040 vs. NCBI nr
Match: XP_022984058.1 (myb-related protein P-like [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 4.4e-30
Identity = 89/165 (53.94%), Postives = 108/165 (65.45%), Query Frame = 0


Query: 1   MERESGGCGGCVDEVRE-----EEIIKKTPEGRHDV-GGSVTVNLNNDVWEEDEMSLDLD 60
           +ERES  CG   D   E     EE +    EGRHDV GGSV+++ N DV+EED+MSLDL 
Sbjct: 167 LERESSVCGAVDDTTEERGSPNEETVDDPAEGRHDVGGGSVSLDFNEDVFEEDDMSLDLS 226

Query: 61  ELLTSVE-DYEDEIHKFITTGTCKSNTDHVSI---APAEMEVGGECSSISSSSLMSLDSP 120
           ELLT+VE ++ D+       GTC+SNT  V++     AEME+GGECSS+SSS   SLDSP
Sbjct: 227 ELLTNVEVEWNDD-----AAGTCESNTATVAVVDAGTAEMELGGECSSVSSS--FSLDSP 286

Query: 121 WNWESFAGDIEW-----DAGEDFGGGVGIAVAESESEAVISWLLS 151
           WNWESFAG  EW     DAG+DF GG       +E +AVISWLLS
Sbjct: 287 WNWESFAGGHEWDAVEFDAGDDFAGGA------AEPDAVISWLLS 318

[Close]

BLAST of CsGy4G001040 vs. NCBI nr
Match: XP_023529120.1 (myb-related protein 308-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 88/160 (55.00%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 1   MERESGGCGGCVD-----EVREEEIIKKTPEGRHDV-GGSVTVNLNNDVWEEDEMSLDLD 60
           +ERES  CGG  D     E R EE +    EGRHDV GGSV+++ N+DV EED+MSLDL 
Sbjct: 167 LERESSVCGGVDDITEERESRNEETVDDAGEGRHDVGGGSVSLDFNDDVLEEDDMSLDLS 226

Query: 61  ELLTSVE-DYEDEIHKFITTGTCKSNTDHVSI---APAEMEVGGECSSISSSSLMSLDSP 120
           EL+T+VE ++ D+     T GTC+SNT  V++     AEME+GGECSS+SSS   SLDSP
Sbjct: 227 ELITNVEVEWNDD-----TAGTCESNTATVAVVDAGTAEMELGGECSSVSSS--FSLDSP 286

Query: 121 WNWESFAGDIEWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           WNWESFAG  EWDA E   G        +E +AVISWLLS
Sbjct: 287 WNWESFAGGHEWDAVEFDAGDA------AEPDAVISWLLS 313

[Close]

BLAST of CsGy4G001040 vs. TrEMBL
Match: tr|A0A0A0KTE8|A0A0A0KTE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003090 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.4e-79
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60
           MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV
Sbjct: 1   MERESGGCGGCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV 60

Query: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120
           EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI
Sbjct: 61  EDYEDEIHKFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDI 120

Query: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           EWDAGEDFGGGVGIAVAESESEAVISWLLS
Sbjct: 121 EWDAGEDFGGGVGIAVAESESEAVISWLLS 150

[Close]

BLAST of CsGy4G001040 vs. TrEMBL
Match: tr|A0A1S3BYE2|A0A1S3BYE2_CUCME (myb-related protein 308-like OS=Cucumis melo OX=3656 GN=LOC103494741 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 115/155 (74.19%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 5   SGGCG-GCVDEVREEEIIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSV--- 64
           SG CG GCVD++REEE I K PEGRHDVGGS T+N +NDV EEDEMSLDLDELLT+V   
Sbjct: 175 SGVCGRGCVDDLREEETINKWPEGRHDVGGSETLNYSNDVLEEDEMSLDLDELLTNVEVE 234

Query: 65  --EDYEDEIHKFITTGTCKSNTDHVSIAP---AEMEVGGECSSISSSSLMSLDSPWNWES 124
             EDYEDEIHKF TTGTC SNTD+VS+AP   AEME+GG+CS ISSSS  SL+SPWNWES
Sbjct: 235 WDEDYEDEIHKFNTTGTCGSNTDNVSVAPAGAAEMELGGDCSPISSSS-FSLNSPWNWES 294

Query: 125 FAGDIEWDAGEDFGGGVGIAVAESESEAVISWLLS 151
           FAGDIEWDAGE+FGG V      +ESEAVISWLLS
Sbjct: 295 FAGDIEWDAGENFGGAV------AESEAVISWLLS 322

The following BLAST results are available for this feature:

BLAST of CsGy4G001040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152356.2	6.7e-79	100.00	PREDICTED: myb-related protein P-like [Cucumis sativus]	[more]
KGN52843.1	6.7e-79	100.00	hypothetical protein Csa_4G003090 [Cucumis sativus]	[more]
XP_008454301.1	1.7e-50	74.19	PREDICTED: myb-related protein 308-like [Cucumis melo]	[more]
XP_022984058.1	4.4e-30	53.94	myb-related protein P-like [Cucurbita maxima]	[more]
XP_023529120.1	1.3e-29	55.00	myb-related protein 308-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G001040 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G001040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G001040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTE8\|A0A0A0KTE8_CUCSA	4.4e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003090 PE=4 SV=1	[more]
tr\|A0A1S3BYE2\|A0A1S3BYE2_CUCME	1.1e-50	74.19	myb-related protein 308-like OS=Cucumis melo OX=3656 GN=LOC103494741 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G001040.1	CsGy4G001040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G001040	Csa4G003090	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G001040	MELO3C017925	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G001040	CSPI04G01150	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G001040	Cp4.1LG03g05230	Cucurbita pepo (Zucchini)	cgybcpeB553
CsGy4G001040	MELO3C017925.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G001040	CsaV3_4G001130	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G001040	Cla97C10G194150	Watermelon (97103) v2	cgybwmbB259
CsGy4G001040	Bhi11G001051	Wax gourd	cgybwgoB342
CsGy4G001040	Carg11153	Silver-seed gourd	carcgybB0806
CsGy4G001040	Carg07389	Silver-seed gourd	carcgybB0759

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G001040	Cucumber (Gy14) v2	cgybcgybB134
CsGy4G001040	Cucurbita maxima (Rimu)	cgybcmaB486
CsGy4G001040	Cucurbita maxima (Rimu)	cgybcmaB516
CsGy4G001040	Cucurbita maxima (Rimu)	cgybcmaB577
CsGy4G001040	Cucurbita moschata (Rifu)	cgybcmoB456
CsGy4G001040	Cucurbita moschata (Rifu)	cgybcmoB472
CsGy4G001040	Cucurbita moschata (Rifu)	cgybcmoB487
CsGy4G001040	Cucurbita pepo (Zucchini)	cgybcpeB541
CsGy4G001040	Cucumber (Chinese Long) v2	cgybcuB191
CsGy4G001040	Bottle gourd (USVL1VR-Ls)	cgyblsiB257
CsGy4G001040	Melon (DHL92) v3.5.1	cgybmeB239
CsGy4G001040	Melon (DHL92) v3.6.1	cgybmedB238
CsGy4G001040	Watermelon (Charleston Gray)	cgybwcgB251
CsGy4G001040	Watermelon (97103) v1	cgybwmB269
CsGy4G001040	Wild cucumber (PI 183967)	cgybcpiB194
CsGy4G001040	Silver-seed gourd	carcgybB0117
CsGy4G001040	Cucumber (Chinese Long) v3	cgybcucB195
CsGy4G001040	Watermelon (97103) v2	cgybwmbB318