Csa3G669620 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G669620
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 26089776 .. 26090060 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGGCCTACCCCAAGGGCATCGTGATAATTTGAATCTTCTTTCTCAAATGACGTATCAGACCATTGTTTTGGTTAGTTTTAGCTTCATTGTTTCCTTAATACTTGGTTTTACTTGTTAA

mRNA sequence

ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGGCCTACCCCAAGGGCATCGTGATAATTTGAATCTTCTTTCTCAAATGACGTATCAGACCATTGTTTTGGTTAGTTTTAGCTTCATTGTTTCCTTAATACTTGGTTTTACTTGTTAA

Coding sequence (CDS)

ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGGCCTACCCCAAGGGCATCGTGATAATTTGAATCTTCTTTCTCAAATGACGTATCAGACCATTGTTTTGGTTAGTTTTAGCTTCATTGTTTCCTTAATACTTGGTTTTACTTGTTAA

Protein sequence

MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQGHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC*
Homology
[Close]
BLAST of Csa3G669620 vs. TrEMBL
Match: A0A0A0LCZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G669620 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60
          MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ
Sbjct: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60

Query: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 95
          GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC
Sbjct: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 94

[Close]
BLAST of Csa3G669620 vs. NCBI nr
Match: gi|700203409|gb|KGN58542.1| (hypothetical protein Csa_3G669620 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60
          MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ
Sbjct: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60

Query: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 95
          GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC
Sbjct: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 94

The following BLAST results are available for this feature:
BLAST of Csa3G669620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCZ0_CUCSA1.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G669620 PE=4 SV=1[more]
BLAST of Csa3G669620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203409|gb|KGN58542.1|1.9e-46100.00hypothetical protein Csa_3G669620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G669620.1Csa3G669620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G669620CsGy3G027130Cucumber (Gy14) v2cgybcuB111
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G669620Bottle gourd (USVL1VR-Ls)culsiB172
Csa3G669620Bottle gourd (USVL1VR-Ls)culsiB183
Csa3G669620Bottle gourd (USVL1VR-Ls)culsiB188
Csa3G669620Melon (DHL92) v3.6.1cumedB175
Csa3G669620Melon (DHL92) v3.6.1cumedB193
Csa3G669620Melon (DHL92) v3.6.1cumedB202
Csa3G669620Silver-seed gourdcarcuB0483
Csa3G669620Silver-seed gourdcarcuB0777
Csa3G669620Silver-seed gourdcarcuB0779
Csa3G669620Silver-seed gourdcarcuB0829
Csa3G669620Silver-seed gourdcarcuB0830
Csa3G669620Watermelon (97103) v2cuwmbB182
Csa3G669620Watermelon (97103) v2cuwmbB188
Csa3G669620Wax gourdcuwgoB221
Csa3G669620Wax gourdcuwgoB243
Csa3G669620Cucumber (Chinese Long) v2cucuB127
Csa3G669620Cucumber (Gy14) v1cgycuB294
Csa3G669620Melon (DHL92) v3.5.1cumeB218
Csa3G669620Cucurbita maxima (Rimu)cmacuB241
Csa3G669620Cucurbita maxima (Rimu)cmacuB256
Csa3G669620Cucurbita maxima (Rimu)cmacuB361
Csa3G669620Cucurbita maxima (Rimu)cmacuB453
Csa3G669620Cucurbita maxima (Rimu)cmacuB886
Csa3G669620Cucurbita moschata (Rifu)cmocuB228
Csa3G669620Cucurbita moschata (Rifu)cmocuB241
Csa3G669620Cucurbita moschata (Rifu)cmocuB440
Csa3G669620Cucurbita moschata (Rifu)cmocuB873
Csa3G669620Melon (DHL92) v3.5.1cumeB189
Csa3G669620Melon (DHL92) v3.5.1cumeB207
Csa3G669620Watermelon (Charleston Gray)cuwcgB190
Csa3G669620Watermelon (Charleston Gray)cuwcgB196
Csa3G669620Watermelon (97103) v1cuwmB193
Csa3G669620Watermelon (97103) v1cuwmB203
Csa3G669620Cucurbita pepo (Zucchini)cpecuB137
Csa3G669620Cucurbita pepo (Zucchini)cpecuB545
Csa3G669620Cucurbita pepo (Zucchini)cpecuB562
Csa3G669620Cucurbita pepo (Zucchini)cpecuB599
Csa3G669620Cucurbita pepo (Zucchini)cpecuB612