Csa3G669620.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G669620.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 26089776 .. 26090060 (-)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGGCCTACCCCAAGGGCATCGTGATAATTTGAATCTTCTTTCTCAAATGACGTATCAGACCATTGTTTTGGTTAGTTTTAGCTTCATTGTTTCCTTAATACTTGGTTTTACTTGTTAA

mRNA sequence

ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGGCCTACCCCAAGGGCATCGTGATAATTTGAATCTTCTTTCTCAAATGACGTATCAGACCATTGTTTTGGTTAGTTTTAGCTTCATTGTTTCCTTAATACTTGGTTTTACTTGTTAA

Coding sequence (CDS)

ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGGCCTACCCCAAGGGCATCGTGATAATTTGAATCTTCTTTCTCAAATGACGTATCAGACCATTGTTTTGGTTAGTTTTAGCTTCATTGTTTCCTTAATACTTGGTTTTACTTGTTAA

Protein sequence

MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQGHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC*
Homology
[Close]
BLAST of Csa3G669620.1 vs. TrEMBL
Match: A0A0A0LCZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G669620 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60
          MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ
Sbjct: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60

Query: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 95
          GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC
Sbjct: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 94

[Close]
BLAST of Csa3G669620.1 vs. NCBI nr
Match: gi|700203409|gb|KGN58542.1| (hypothetical protein Csa_3G669620 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60
          MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ
Sbjct: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60

Query: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 95
          GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC
Sbjct: 61 GHRDNLNLLSQMTYQTIVLVSFSFIVSLILGFTC 94

The following BLAST results are available for this feature:
BLAST of Csa3G669620.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCZ0_CUCSA1.3e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G669620 PE=4 SV=1[more]
BLAST of Csa3G669620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203409|gb|KGN58542.1|1.9e-46100.00hypothetical protein Csa_3G669620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G669620Csa3G669620gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G669620.1Csa3G669620.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G669620.1.cds1Csa3G669620.1.cds1CDS