CsGy3G027130 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G027130
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 28256463 .. 28256728 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGACCTACCCCAAGGGCATCTTGATAATTTGAACCTTCTTTCTCAAATGACGTATCAGAGCTTTGTTTTGGTTAGTTTTAGCTTCATTGTGACTCTTAA

mRNA sequence

ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGACCTACCCCAAGGGCATCTTGATAATTTGAACCTTCTTTCTCAAATGACGTATCAGAGCTTTGTTTTGCTTCATTGTGACTCTTAA

Coding sequence (CDS)

ATGGCTCCCCTCTCGAGTGCACGTATCACATTTCTGACAAACTCTAGAGCACCACGGCGCTTTTCGCATCAAGGTCTTCTATGGATGGCGTCATGCTCCAACAATGTGGAGCATTGCAATGCTCGTAGCCTCAACAAACTTTTGCTATTGGTGCAGCCACAACATTGTGACCTACCCCAAGGGCATCTTGATAATTTGAACCTTCTTTCTCAAATGACGTATCAGAGCTTTGTTTTGCTTCATTGTGACTCTTAA

Protein sequence

MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCDLPQGHLDNLNLLSQMTYQSFVLLHCDS
Homology
[Close]
BLAST of CsGy3G027130 vs. NCBI nr
Match: KGN58542.1 (hypothetical protein Csa_3G669620 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 5.7e-35
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCDLPQ 60
          MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHC LPQ
Sbjct: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60

Query: 61 GHLDNLNLLSQMTYQSFVLL 81
          GH DNLNLLSQMTYQ+ VL+
Sbjct: 61 GHRDNLNLLSQMTYQTIVLV 80

[Close]
BLAST of CsGy3G027130 vs. TrEMBL
Match: tr|A0A0A0LCZ0|A0A0A0LCZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G669620 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.7e-35
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCDLPQ 60
          MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHC LPQ
Sbjct: 1  MAPLSSARITFLTNSRAPRRFSHQGLLWMASCSNNVEHCNARSLNKLLLLVQPQHCGLPQ 60

Query: 61 GHLDNLNLLSQMTYQSFVLL 81
          GH DNLNLLSQMTYQ+ VL+
Sbjct: 61 GHRDNLNLLSQMTYQTIVLV 80

The following BLAST results are available for this feature:
BLAST of CsGy3G027130 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58542.15.7e-3593.75hypothetical protein Csa_3G669620 [Cucumis sativus][more]
BLAST of CsGy3G027130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G027130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G027130 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCZ0|A0A0A0LCZ0_CUCSA3.7e-3593.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G669620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G027130.1CsGy3G027130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G027130Csa3G669620Cucumber (Chinese Long) v2cgybcuB111
CsGy3G027130CsaV3_3G031690Cucumber (Chinese Long) v3cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G027130Cucumber (Chinese Long) v3cgybcucB154
CsGy3G027130Watermelon (97103) v2cgybwmbB175
CsGy3G027130Watermelon (97103) v2cgybwmbB179
CsGy3G027130Wax gourdcgybwgoB212
CsGy3G027130Wax gourdcgybwgoB233
CsGy3G027130Cucumber (Gy14) v2cgybcgybB113
CsGy3G027130Cucurbita maxima (Rimu)cgybcmaB307
CsGy3G027130Cucurbita maxima (Rimu)cgybcmaB321
CsGy3G027130Cucurbita maxima (Rimu)cgybcmaB350
CsGy3G027130Cucurbita maxima (Rimu)cgybcmaB364
CsGy3G027130Cucurbita maxima (Rimu)cgybcmaB366
CsGy3G027130Cucurbita maxima (Rimu)cgybcmaB456
CsGy3G027130Cucurbita moschata (Rifu)cgybcmoB280
CsGy3G027130Cucurbita moschata (Rifu)cgybcmoB292
CsGy3G027130Cucurbita moschata (Rifu)cgybcmoB335
CsGy3G027130Cucurbita moschata (Rifu)cgybcmoB337
CsGy3G027130Cucurbita moschata (Rifu)cgybcmoB422
CsGy3G027130Cucurbita pepo (Zucchini)cgybcpeB308
CsGy3G027130Cucurbita pepo (Zucchini)cgybcpeB356
CsGy3G027130Cucurbita pepo (Zucchini)cgybcpeB378
CsGy3G027130Cucurbita pepo (Zucchini)cgybcpeB409
CsGy3G027130Cucurbita pepo (Zucchini)cgybcpeB393
CsGy3G027130Cucurbita pepo (Zucchini)cgybcpeB396
CsGy3G027130Cucumber (Chinese Long) v2cgybcuB150
CsGy3G027130Bottle gourd (USVL1VR-Ls)cgyblsiB156
CsGy3G027130Bottle gourd (USVL1VR-Ls)cgyblsiB168
CsGy3G027130Bottle gourd (USVL1VR-Ls)cgyblsiB172
CsGy3G027130Melon (DHL92) v3.5.1cgybmeB157
CsGy3G027130Melon (DHL92) v3.5.1cgybmeB172
CsGy3G027130Melon (DHL92) v3.5.1cgybmeB180
CsGy3G027130Melon (DHL92) v3.6.1cgybmedB157
CsGy3G027130Melon (DHL92) v3.6.1cgybmedB173
CsGy3G027130Melon (DHL92) v3.6.1cgybmedB181
CsGy3G027130Watermelon (Charleston Gray)cgybwcgB175
CsGy3G027130Watermelon (Charleston Gray)cgybwcgB180
CsGy3G027130Watermelon (97103) v1cgybwmB182
CsGy3G027130Watermelon (97103) v1cgybwmB192
CsGy3G027130Wild cucumber (PI 183967)cgybcpiB110
CsGy3G027130Wild cucumber (PI 183967)cgybcpiB154
CsGy3G027130Silver-seed gourdcarcgybB0460
CsGy3G027130Silver-seed gourdcarcgybB0754
CsGy3G027130Silver-seed gourdcarcgybB0756
CsGy3G027130Silver-seed gourdcarcgybB0802
CsGy3G027130Silver-seed gourdcarcgybB0803