Csa3G418760 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G418760
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 19920624 .. 19921761 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATGTGAGAAGCAGAAAGAAGAGAAAGAGAACAAAAAGAAAGAGAGAGAGGGAAAGAAAGGAAAAAGTACGAAAAGAGCGAGAGGAGGAAGCAAGAAGAGAAAAAGAACGAAAAGCAAAAGTAGAAGAAGAACAATGAAGGAGGGAGGAAATAGAGAAATAAGGCAAAAGACAACACGAAGGATCCTACACTCCTATCGCAGAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGTGAAACCTTCAAAGAAGAAAAAGAAGATCATCTTAAAAAAATAAGGTTTTGAAAGAACGATTCGCCAAGAGGAGAAAAGAAAAGGAATTAAAAAGGGTCCTGTAGGCAAAACGACCCTAAAATAAGAGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGGTATTTGAAGTCAGAGCAGACATAGTTCAAGCGTAAAACCTTAACCTTTCAAAAATGGCTGATCGTCAGGAATCTACCCTTGAATTTGCCAAAATTTTCAAATTCCTAAAGAGGAAGGAGGAATCTTCATATATCCTGCCCTAGAAAAGGGCCTTCACTGGAAAAACCACCTCTTCTTATCGAAAATCAAACACAACATCCTTGCAAAGCACCAGAAGGGCTTTGCGAGAATGGAATTCACCAAGTTTAAACCTATTAGAAACCCCTCAACCATGCGTTCTGTTAGAACTACTTCAACGCGAGCTCCATGCCCACTAG

mRNA sequence

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGAAAAGGGCCTTCACTGGAAAAACCACCTCTTCTTATCGAAAATCAAACACAACATCCTTGCAAAGCACCAGAAGGGCTTTGCGAGAATGGAATTCACCAAGTTTAAACCTATTAGAAACCCCTCAACCATGCGTTCTGTTAGAACTACTTCAACGCGAGCTCCATGCCCACTAG

Coding sequence (CDS)

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGAAAAGGGCCTTCACTGGAAAAACCACCTCTTCTTATCGAAAATCAAACACAACATCCTTGCAAAGCACCAGAAGGGCTTTGCGAGAATGGAATTCACCAAGTTTAAACCTATTAGAAACCCCTCAACCATGCGTTCTGTTAGAACTACTTCAACGCGAGCTCCATGCCCACTAG

Protein sequence

MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSNTTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH*
Homology
[Close]
BLAST of Csa3G418760 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 8.3e-121
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 

Query: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60
           MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM
Sbjct: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60

Query: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120
           RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN
Sbjct: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120

Query: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180
           APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN
Sbjct: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180

Query: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 222
           TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH
Sbjct: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 221

[Close]
BLAST of Csa3G418760 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1 

Query: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69

Query: 115 R 116
           +
Sbjct: 70  K 70

[Close]
BLAST of Csa3G418760 vs. NCBI nr
Match: gi|700202852|gb|KGN57985.1| (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 1.2e-120
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 

Query: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60
           MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM
Sbjct: 1   MASLLALVEERKKAREEEKNRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEM 60

Query: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120
           RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN
Sbjct: 61  RLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDEN 120

Query: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180
           APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN
Sbjct: 121 APLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEKRAFTGKTTSSYRKSN 180

Query: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 222
           TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH
Sbjct: 181 TTSLQSTRRALREWNSPSLNLLETPQPCVLLELLQRELHAH 221

[Close]
BLAST of Csa3G418760 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 6.3e-13
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1 

Query: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69

Query: 115 R 116
           +
Sbjct: 70  K 70

[Close]
BLAST of Csa3G418760 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 37/70 (52.86%), Postives = 54/70 (77.14%), Query Frame = 1 

Query: 43  LNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLED 102
           + + ++ I    +EKKE++L+E+EELLNKVDKV L V+K K ++T  EE CEE +K++E+
Sbjct: 47  IKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEE 106

Query: 103 LSPVEDEVEE 113
           LSP+EDEV E
Sbjct: 107 LSPLEDEVVE 115

[Close]
BLAST of Csa3G418760 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-09
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 

Query: 16  EEEKNRLNLRGLQKRFKRKRKMWHMTFLNLN--SRCIALRPQEKKEMRLKEQEELLNKVD 75
           EEEK      G  K  K      H++  N++  SR  AL   EKKE +L+EQEELLNKV+
Sbjct: 20  EEEKQE---EGSLKSLKINEIEVHLSEDNIDAQSRRKALA-DEKKETKLREQEELLNKVE 79

Query: 76  KVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDE 110
           KV L  +KGK K+T +EE C+E E+++E+LSP +DE
Sbjct: 80  KVALSTEKGKTKKT-TEEYCKEFEREVEELSPFKDE 110

[Close]
BLAST of Csa3G418760 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 48  RCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVE 107
           R +AL  + KKE++L++ EELLNKVDK+ L V+KGK K    EE  +E EK++++ SP+E
Sbjct: 33  RAMALA-EGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLE 92

Query: 108 DEVEE 113
           D V E
Sbjct: 93  DNVVE 96

The following BLAST results are available for this feature:
BLAST of Csa3G418760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7S0_CUCSA8.3e-121100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1[more]
A0A0A0K7W9_CUCSA4.4e-1360.66Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1[more]
BLAST of Csa3G418760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202852|gb|KGN57985.1|1.2e-120100.00hypothetical protein Csa_3G418760 [Cucumis sativus][more]
gi|700189199|gb|KGN44432.1|6.3e-1360.66hypothetical protein Csa_7G290550 [Cucumis sativus][more]
gi|659130998|ref|XP_008465464.1|1.5e-0952.86PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|659109371|ref|XP_008454680.1|4.3e-0947.92PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo][more]
gi|659083323|ref|XP_008442290.1|3.0e-0750.77PREDICTED: stress response protein NST1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G418760.1Csa3G418760.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 5..25
score: -coord: 79..99
scor