CSPI03G23320 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G23320
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 20153027 .. 20153413 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGGTTGCAAAAACAGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCCAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGTGAAACCTTCAAAGAAGAAAAAGAAGATCATCTTAAAAAATAAGGTTTTGAAAGAACGATTCGCCAAGAGGAGAAAAGAAAAAGGAATTAAAAAGGGTCCTGTAGGCAAAACGACCCTAAAATAA

mRNA sequence

ATGAGAGGGTTGCAAAAACAGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCCAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGTGAAACCTTCAAAGAAGAAAAAGAAGATCATCTTAAAAAATAAGGTTTTGAAAGAACGATTCGCCAAGAGGAGAAAAGAAAAAGGAATTAAAAAGGGTCCTGTAGGCAAAACGACCCTAAAATAA

Coding sequence (CDS)

ATGAGAGGGTTGCAAAAACAGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCCAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGTGAAACCTTCAAAGAAGAAAAAGAAGATCATCTTAAAAAATAAGGTTTTGAAAGAACGATTCGCCAAGAGGAGAAAAGAAAAAGGAATTAAAAAGGGTCCTGTAGGCAAAACGACCCTAAAATAA
Homology
[Close]
BLAST of CSPI03G23320 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.4e-37
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1 

Query: 1   MRGLQKQFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGK 60
           +RGLQK+FKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGK
Sbjct: 24  LRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGK 83

Query: 61  AKRTPSEEICEELEKKLEDLSPVEDEV 88
           AKRT SEEICEELEKKLEDLSPVEDEV
Sbjct: 84  AKRTQSEEICEELEKKLEDLSPVEDEV 110

[Close]
BLAST of CSPI03G23320 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-19
Identity = 57/90 (63.33%), Postives = 75/90 (83.33%), Query Frame = 1 

Query: 32  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTPSEEICEELEKKLEDLSPVEDEVVKPS 91
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++TPSEEICEE E+KLEDLSP+EDEVVKP 
Sbjct: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKP- 69

Query: 92  KKKKKIILKNKVLKERFAKRRKEKGIKKGP 122
             KKK+ +K  VLK++F KRR+EK  KKGP
Sbjct: 70  -LKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]
BLAST of CSPI03G23320 vs. NCBI nr
Match: gi|700202852|gb|KGN57985.1| (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-36
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1 

Query: 1   MRGLQKQFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGK 60
           +RGLQK+FKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGK
Sbjct: 24  LRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGK 83

Query: 61  AKRTPSEEICEELEKKLEDLSPVEDEV 88
           AKRT SEEICEELEKKLEDLSPVEDEV
Sbjct: 84  AKRTQSEEICEELEKKLEDLSPVEDEV 110

[Close]
BLAST of CSPI03G23320 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-19
Identity = 57/90 (63.33%), Postives = 75/90 (83.33%), Query Frame = 1 

Query: 32  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTPSEEICEELEKKLEDLSPVEDEVVKPS 91
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++TPSEEICEE E+KLEDLSP+EDEVVKP 
Sbjct: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKP- 69

Query: 92  KKKKKIILKNKVLKERFAKRRKEKGIKKGP 122
             KKK+ +K  VLK++F KRR+EK  KKGP
Sbjct: 70  -LKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]
BLAST of CSPI03G23320 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-12
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = 1 

Query: 25  RCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTPSEEICEELEKKLEDLSPVE 84
           R +AL  + KKE++L++ EELLNKVDK+ L V+KGK K    EE  +E EK++++ SP+E
Sbjct: 33  RAMALA-EGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLE 92

Query: 85  DEVVKPSKKKKKIILKNKVLKERFAKRRKEKGIKKGP 122
           D VV+   KK+ + +K KVL+++FAKRRKEK  ++GP
Sbjct: 93  DNVVERPAKKRNVTMKKKVLRDQFAKRRKEKK-RRGP 127

[Close]
BLAST of CSPI03G23320 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 48/99 (48.48%), Postives = 72/99 (72.73%), Query Frame = 1 

Query: 20  LNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTPSEEICEELEKKLED 79
           + + ++ I    +EKKE++L+E+EELLNKVDKV L V+K K ++T  EE CEE +K++E+
Sbjct: 47  IKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEE 106

Query: 80  LSPVEDEVVKPSKKKKKIIL----KNKVLKERFAKRRKE 115
           LSP+EDEVV+ S KKK+I+     K K  KE+ A++ +E
Sbjct: 107 LSPLEDEVVEKSSKKKRIMEGQDDKRKEKKEKKAQQEEE 144

[Close]
BLAST of CSPI03G23320 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 45/99 (45.45%), Postives = 69/99 (69.70%), Query Frame = 1 

Query: 22  LNSRCIALRP-QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTPSEEICEELEKKLEDL 81
           +  RC+ALRP +EKKE +L+E+EELL KVD V L  +K K +    E   EE EK+++ L
Sbjct: 80  VQERCMALRPWREKKETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEEFEKEIDKL 139

Query: 82  SPVEDEVVKPSKKKKKIILKNKVLKERFAKRRKEKGIKK 120
            P+E++V++P+ KK+   +K K L+++FAKRR E+  +K
Sbjct: 140 CPLEEKVIRPA-KKRTFTMKKKALRKQFAKRRVEEMKRK 177

The following BLAST results are available for this feature:
BLAST of CSPI03G23320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G23320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7S0_CUCSA7.4e-3796.55Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1[more]
A0A0A0K7W9_CUCSA2.4e-1963.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1[more]
BLAST of CSPI03G23320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G23320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202852|gb|KGN57985.1|1.1e-3696.55hypothetical protein Csa_3G418760 [Cucumis sativus][more]
gi|700189199|gb|KGN44432.1|3.4e-1963.33hypothetical protein Csa_7G290550 [Cucumis sativus][more]
gi|659083323|ref|XP_008442290.1|5.3e-1250.52PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|659130998|ref|XP_008465464.1|1.1e-0948.48PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|659090014|ref|XP_008445787.1|3.2e-0945.45PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23320.1CSPI03G23320.1mRNA