CsGy3G022340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G022340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein MNN4-like
Location	Chr3 : 20739296 .. 20740151 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATGTGAGAAGCAGAAAGAAGAGAAAGAGAACAAAAAGAAAGAGAGAGAGGGAAAGAAAGGAAAAAGTACGAAAAGAGCGAGAGGAGGAAGCAAGAAGAGAAAAAGAACGAAAAGCAAAAGTAGAAGAAGAACAATGAAGGAGGGAGGAAATAGAGAAATAAGGCAAAAGACAACACGAAGGATCCTACACTCCTATCGCAGAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGTGAAACCTTCAAAGAAGAAAAAGAAGATCATCTTAAAAAAATAAGGTTTTGAAAGAACGATTCGCCAAGAGGAGAAAAGAAAAGGAATTAAAAAGGGTCCTGTAGGCAAAACGACCCTAAAATAAGAGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGGTATTTGAAGTCAGAGCAGACATAGTTCAAGCGTAA

mRNA sequence

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATGTGAGAAGCAGAAAGAAGAGAAAGAGAACAAAAAGAAAGAGAGAGAGGGAAAGAAAGGAAAAAGTACGAAAAGAGCGAGAGGAGGAAGCAAGAAGAGAAAAAGAACGAAAAGCAAAAAGAAATAAGGCAAAAGACAACACGAAGGATCCTACACTCCTATCGCAGAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGGTATTTGAAGTCAGAGCAGACATAGTTCAAGCGTAA

Coding sequence (CDS)

ATGGCTTCATTGTTGGCATTGGTTGAAGAAAGGAAGAAGGCAAGGGAAGAGGAAAAGAATGTGAGAAGCAGAAAGAAGAGAAAGAGAACAAAAAGAAAGAGAGAGAGGGAAAGAAAGGAAAAAGTACGAAAAGAGCGAGAGGAGGAAGCAAGAAGAGAAAAAGAACGAAAAGCAAAAAGAAATAAGGCAAAAGACAACACGAAGGATCCTACACTCCTATCGCAGAGACTGAATTTGAGAGGGTTACAAAAACGGTTCAAGAGAAAAAGGAAAATGTGGCATATGACCTTCTTAAACTTGAATTCACGATGCATAGCATTAAGGCCGCAAGAAAAGAAAGAGATGAGGTTGAAGGAGCAAGAAGAACTCCTCAACAAAGTGGACAAAGTAACCCTCTTCGTGAAAAAGGGTAAGGCAAAAAGGACTCAAAGCGAGGAAATTTGCGAAGAGCTTGAAAAGAAACTGGAAGATTTAAGTCCTGTGGAGGATGAAGTGGAAGAGGACCTGAGACTAGGCGATGAGAATGCTCCCCTCTTTATCGAGTATGTGAGTAAGAACTTCAAGATAGAAAATGGGTTCTTCCCCTTCAAAGACAATTTACCAACCTTGTTAAGGGCCCCCATTCGCGCTTTCAAGTGGGAAATTTTTTTCGATGAGGTATTTGAAGTCAGAGCAGACATAGTTCAAGCGTAA

Protein sequence

MASLLALVEERKKAREEEKNVRSRKKRKRTKRKRERERKEKVRKEREEEARREKERKAKRNKAKDNTKDPTLLSQRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFIEYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDEVFEVRADIVQA

Homology

[Close]

BLAST of CsGy3G022340 vs. NCBI nr
Match: KGN57985.1 (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 1.8e-75
Identity = 164/219 (74.89%), Postives = 164/219 (74.89%), Query Frame = 0


Query: 1   MASLLALVEERKKAREEEKNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASLLALVEERKKAREEEKN                                        
Sbjct: 1   MASLLALVEERKKAREEEKN---------------------------------------- 60

Query: 61  XXXXXXXXXPTLLSQRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQ 120
                          RLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQ
Sbjct: 61  ---------------RLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQ 120

Query: 121 EELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFI 180
           EELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFI
Sbjct: 121 EELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFI 164

Query: 181 EYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDE 220
           EYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDE
Sbjct: 181 EYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDE 164

[Close]

BLAST of CsGy3G022340 vs. NCBI nr
Match: KGN44432.1 (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 110 QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 169
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69

Query: 170 R 171
           +
Sbjct: 70  K 70

[Close]

BLAST of CsGy3G022340 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 34/66 (51.52%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 98  LNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLED 157
           + + ++ I    +EKKE++L+E+EELLNKVDKV L V+K K ++T  EE CEE +K++E+
Sbjct: 47  IKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEE 106

Query: 158 LSPVED 164
           LSP+ED
Sbjct: 107 LSPLED 111

[Close]

BLAST of CsGy3G022340 vs. TrEMBL
Match: tr|A0A0A0L7S0|A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.2e-75
Identity = 164/219 (74.89%), Postives = 164/219 (74.89%), Query Frame = 0


Query: 1   MASLLALVEERKKAREEEKNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASLLALVEERKKAREEEKN                                        
Sbjct: 1   MASLLALVEERKKAREEEKN---------------------------------------- 60

Query: 61  XXXXXXXXXPTLLSQRLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQ 120
                          RLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQ
Sbjct: 61  ---------------RLNLRGLQKRFKRKRKMWHMTFLNLNSRCIALRPQEKKEMRLKEQ 120

Query: 121 EELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFI 180
           EELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFI
Sbjct: 121 EELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDLRLGDENAPLFI 164

Query: 181 EYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDE 220
           EYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDE
Sbjct: 181 EYVSKNFKIENGFFPFKDNLPTLLRAPIRAFKWEIFFDE 164

[Close]

BLAST of CsGy3G022340 vs. TrEMBL
Match: tr|A0A0A0K7W9|A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-10
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 110 QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 169
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69

Query: 170 R 171
           +
Sbjct: 70  K 70

[Close]

BLAST of CsGy3G022340 vs. TrEMBL
Match: tr|A0A1S3CPC6|A0A1S3CPC6_CUCME (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.7e-06
Identity = 34/66 (51.52%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 98  LNLNSRCIALRPQEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLED 157
           + + ++ I    +EKKE++L+E+EELLNKVDKV L V+K K ++T  EE CEE +K++E+
Sbjct: 47  IKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEE 106

Query: 158 LSPVED 164
           LSP+ED
Sbjct: 107 LSPLED 111

The following BLAST results are available for this feature:

BLAST of CsGy3G022340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57985.1	1.8e-75	74.89	hypothetical protein Csa_3G418760 [Cucumis sativus]	[more]
KGN44432.1	5.9e-10	60.66	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]
XP_008465464.1	1.2e-05	51.52	PREDICTED: protein MNN4-like [Cucumis melo]	[more]

BLAST of CsGy3G022340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G022340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G022340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7S0\|A0A0A0L7S0_CUCSA	1.2e-75	74.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1	[more]
tr\|A0A0A0K7W9\|A0A0A0K7W9_CUCSA	3.9e-10	60.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1	[more]
tr\|A0A1S3CPC6\|A0A1S3CPC6_CUCME	7.7e-06	51.52	protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G022340.1	CsGy3G022340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..154
None	No IPR available	COILS	Coil	Coil	coord: 4..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G022340	Csa3G418760	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G022340	CSPI03G23320	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G022340	CsaV3_3G023100	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G022340	Watermelon (97103) v1	cgybwmB234
CsGy3G022340	Silver-seed gourd	carcgybB0891
CsGy3G022340	Silver-seed gourd	carcgybB1001
CsGy3G022340	Watermelon (97103) v2	cgybwmbB203
CsGy3G022340	Watermelon (97103) v2	cgybwmbB210
CsGy3G022340	Wax gourd	cgybwgoB333
CsGy3G022340	Wax gourd	cgybwgoB336
CsGy3G022340	Cucurbita maxima (Rimu)	cgybcmaB286
CsGy3G022340	Cucurbita maxima (Rimu)	cgybcmaB370
CsGy3G022340	Cucurbita moschata (Rifu)	cgybcmoB259
CsGy3G022340	Cucurbita moschata (Rifu)	cgybcmoB341
CsGy3G022340	Cucurbita pepo (Zucchini)	cgybcpeB382
CsGy3G022340	Cucurbita pepo (Zucchini)	cgybcpeB437
CsGy3G022340	Bottle gourd (USVL1VR-Ls)	cgyblsiB178
CsGy3G022340	Bottle gourd (USVL1VR-Ls)	cgyblsiB180
CsGy3G022340	Melon (DHL92) v3.5.1	cgybmeB175
CsGy3G022340	Melon (DHL92) v3.6.1	cgybmedB175
CsGy3G022340	Watermelon (Charleston Gray)	cgybwcgB210
CsGy3G022340	Watermelon (Charleston Gray)	cgybwcgB218