Csa3G391390 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G391390
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 19093293 .. 19093666 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATCTCTCAAAAGAATGTGTTGTTATTTTTCATTATCTTGGTAGCTTCTTCACAAGTTATGGTGGGAGCTAGGGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACGTTGACTCTACTGCTCAAAGCTCTTGATGTTTGTTCGATGATGACGGTATAGAACCATGGAGAGGCAG

mRNA sequence

ATGGGCATCTCTCAAAAGAATGTGTTGTTATTTTTCATTATCTTGGTAGCTTCTTCACAAGTTATGGTGGGAGCTAGGGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACGTTGACTCTACTGCTCAAAGCTCTTGA

Coding sequence (CDS)

ATGGGCATCTCTCAAAAGAATGTGTTGTTATTTTTCATTATCTTGGTAGCTTCTTCACAAGTTATGGTGGGAGCTAGGGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACGTTGACTCTACTGCTCAAAGCTCTTGA

Protein sequence

MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS*

Homology

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BLAST of Csa3G391390 vs. TrEMBL
Match: A0A0A0LCX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60
           MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS
Sbjct: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60

Query: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS
Sbjct: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

[Close]

BLAST of Csa3G391390 vs. TrEMBL
Match: B9I5L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 1   MGISQKN----VLLFFIILVAS-SQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  ++N    V++F  I++ S SQ ++ AR ++ E+W ++        ++  IQ LQR 
Sbjct: 1   MGSQRRNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEK--------IVGNIQSLQRG 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           PVPPSG +PCT IPG+ +G+C+L  MN AG H V   PP  PD+ +N  + A ++
Sbjct: 61  PVPPSGGSPCTHIPGRGSGKCSLGEMNFAG-HTVALAPPAFPDAIMNFGAAASTT 106

[Close]

BLAST of Csa3G391390 vs. TrEMBL
Match: U7DW47_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1174s00200g PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 1


Query: 1   MGISQKNVLLFFIILVA-----SSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  +KN  L  II VA      S  ++ AR ++ E+W+K+   +        IQ LQRA
Sbjct: 1   MGSQRKNRCLTMIIFVAIVFGPCSHQILAARPIEGEQWLKQNLGN--------IQSLQRA 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDS 100
           PVPPS  + CT  PG+ +G C L  MN AGH   HA PP  PD+
Sbjct: 61  PVPPSRGSSCTHTPGRGSGHCPLGEMNFAGHIVAHA-PPAFPDA 95

[Close]

BLAST of Csa3G391390 vs. TrEMBL
Match: A0A0D2PI32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 4   SQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLP---IIQVLQRAPVPPS 63
           S K  ++F I+L+ S   ++  R +        E+    +F+      IQ+L R PVPPS
Sbjct: 3   SFKVTVIFAILLMLSFHHVLAIRTL--------EEEQAKIFIFNKNLTIQLLPRGPVPPS 62

Query: 64  GRNPCTGIPGQSNGRCTLQTMNVAG----HHFVHARPPPIPDS 100
             NPCT IPG+S+GRCTL  MNVAG    +  VH  PP   DS
Sbjct: 63  AGNPCTNIPGRSHGRCTLTEMNVAGGGSHNRVVHHAPPTFSDS 97

[Close]

BLAST of Csa3G391390 vs. TrEMBL
Match: A0A061F0W9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 48 IIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVA-GHHFVHARPPP 96
          I+Q LQR PVPPSG NPCT IPG+S GRCTL  MNVA G   + A PPP
Sbjct: 44 IVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPPP 92

[Close]

BLAST of Csa3G391390 vs. NCBI nr
Match: gi|700202788|gb|KGN57921.1| (hypothetical protein Csa_3G391390 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 6.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60
           MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS
Sbjct: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60

Query: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS
Sbjct: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

[Close]

BLAST of Csa3G391390 vs. NCBI nr
Match: gi|659123868|ref|XP_008461883.1| (PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 8.3e-46
Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = 1


Query: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60
           MGIS+KNVL+ FI LVASSQVMVGARVMK EKWMK+EK DH  F+LPIIQVLQRAPVPPS
Sbjct: 1   MGISRKNVLVVFITLVASSQVMVGARVMKGEKWMKDEKTDHRNFLLPIIQVLQRAPVPPS 60

Query: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           GRNPCTGIPGQS+GRCTLQTMNVAGHHFVHARPP IPDS  +V STAQSS
Sbjct: 61  GRNPCTGIPGQSSGRCTLQTMNVAGHHFVHARPPAIPDSGPDVASTAQSS 110

[Close]

BLAST of Csa3G391390 vs. NCBI nr
Match: gi|224123488|ref|XP_002319090.1| (hypothetical protein POPTR_0013s04080g [Populus trichocarpa])

HSP 1 Score: 79.0 bits (193), Expect = 6.0e-12
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 1   MGISQKN----VLLFFIILVAS-SQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  ++N    V++F  I++ S SQ ++ AR ++ E+W ++        ++  IQ LQR 
Sbjct: 1   MGSQRRNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEK--------IVGNIQSLQRG 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           PVPPSG +PCT IPG+ +G+C+L  MN AG H V   PP  PD+ +N  + A ++
Sbjct: 61  PVPPSGGSPCTHIPGRGSGKCSLGEMNFAG-HTVALAPPAFPDAIMNFGAAASTT 106

[Close]

BLAST of Csa3G391390 vs. NCBI nr
Match: gi|566253991|ref|XP_006387358.1| (hypothetical protein POPTR_1174s00200g [Populus trichocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 5.6e-10
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 1


Query: 1   MGISQKNVLLFFIILVA-----SSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  +KN  L  II VA      S  ++ AR ++ E+W+K+   +        IQ LQRA
Sbjct: 1   MGSQRKNRCLTMIIFVAIVFGPCSHQILAARPIEGEQWLKQNLGN--------IQSLQRA 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDS 100
           PVPPS  + CT  PG+ +G C L  MN AGH   HA PP  PD+
Sbjct: 61  PVPPSRGSSCTHTPGRGSGHCPLGEMNFAGHIVAHA-PPAFPDA 95

[Close]

BLAST of Csa3G391390 vs. NCBI nr
Match: gi|763759247|gb|KJB26578.1| (hypothetical protein B456_004G248500 [Gossypium raimondii])

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 4   SQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLP---IIQVLQRAPVPPS 63
           S K  ++F I+L+ S   ++  R +        E+    +F+      IQ+L R PVPPS
Sbjct: 3   SFKVTVIFAILLMLSFHHVLAIRTL--------EEEQAKIFIFNKNLTIQLLPRGPVPPS 62

Query: 64  GRNPCTGIPGQSNGRCTLQTMNVAG----HHFVHARPPPIPDS 100
             NPCT IPG+S+GRCTL  MNVAG    +  VH  PP   DS
Sbjct: 63  AGNPCTNIPGRSHGRCTLTEMNVAGGGSHNRVVHHAPPTFSDS 97

The following BLAST results are available for this feature:

BLAST of Csa3G391390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCX8_CUCSA	4.7e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1	[more]
B9I5L3_POPTR	4.2e-12	39.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1	[more]
U7DW47_POPTR	3.9e-10	42.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1174s00200g PE=4 SV=1	[more]
A0A0D2PI32_GOSRA	1.9e-09	40.78	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1	[more]
A0A061F0W9_THECC	1.3e-08	67.35	Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1	[more]

BLAST of Csa3G391390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202788\|gb\|KGN57921.1\|	6.7e-56	100.00	hypothetical protein Csa_3G391390 [Cucumis sativus]	[more]
gi\|659123868\|ref\|XP_008461883.1\|	8.3e-46	85.45	PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo]	[more]
gi\|224123488\|ref\|XP_002319090.1\|	6.0e-12	39.13	hypothetical protein POPTR_0013s04080g [Populus trichocarpa]	[more]
gi\|566253991\|ref\|XP_006387358.1\|	5.6e-10	42.31	hypothetical protein POPTR_1174s00200g [Populus trichocarpa]	[more]
gi\|763759247\|gb\|KJB26578.1\|	2.8e-09	40.78	hypothetical protein B456_004G248500 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU156926	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G391390.1	Csa3G391390.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU156926	CU156926	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 8..103 score: 1.9
None	No IPR available	PANTHER	PTHR33592:SF2	SUBFAMILY NOT NAMED	coord: 8..103 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G391390	CSPI03G22660	Wild cucumber (PI 183967)	cpicuB120
Csa3G391390	Cucsa.053530	Cucumber (Gy14) v1	cgycuB037
Csa3G391390	CsGy3G021700	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G391390	Cucurbita maxima (Rimu)	cmacuB515
Csa3G391390	Cucurbita maxima (Rimu)	cmacuB594
Csa3G391390	Cucurbita maxima (Rimu)	cmacuB890
Csa3G391390	Cucurbita moschata (Rifu)	cmocuB506
Csa3G391390	Cucurbita moschata (Rifu)	cmocuB582
Csa3G391390	Melon (DHL92) v3.5.1	cumeB213
Csa3G391390	Melon (DHL92) v3.5.1	cumeB240
Csa3G391390	Watermelon (Charleston Gray)	cuwcgB257
Csa3G391390	Watermelon (97103) v1	cuwmB220
Csa3G391390	Watermelon (97103) v1	cuwmB240
Csa3G391390	Watermelon (97103) v1	cuwmB282
Csa3G391390	Cucurbita pepo (Zucchini)	cpecuB244
Csa3G391390	Cucurbita pepo (Zucchini)	cpecuB723
Csa3G391390	Bottle gourd (USVL1VR-Ls)	culsiB216
Csa3G391390	Bottle gourd (USVL1VR-Ls)	culsiB222
Csa3G391390	Cucumber (Gy14) v2	cgybcuB117
Csa3G391390	Melon (DHL92) v3.6.1	cumedB198
Csa3G391390	Melon (DHL92) v3.6.1	cumedB235
Csa3G391390	Silver-seed gourd	carcuB0769
Csa3G391390	Silver-seed gourd	carcuB0794
Csa3G391390	Watermelon (97103) v2	cuwmbB211
Csa3G391390	Watermelon (97103) v2	cuwmbB234
Csa3G391390	Watermelon (97103) v2	cuwmbB243
Csa3G391390	Wax gourd	cuwgoB304
Csa3G391390	Cucumber (Chinese Long) v2	cucuB055
Csa3G391390	Cucumber (Chinese Long) v2	cucuB087