CSPI03G22660 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G22660
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 19307646 .. 19307999 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATCTCTCAAAAGAATGTGTTGTTATTTTTCATTATCTTGGTAGCTTCTTCACAAGTTATGGTGGGAGCTAGAGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACGTTGACTCTACTGCTCAAAGCTCTTGATGTTTGTTCGATGATGACGGT

mRNA sequence

ATGGGCATCTCTCAAAAGAATGTGTTGTTATTTTTCATTATCTTGGTAGCTTCTTCACAAGTTATGGTGGGAGCTAGAGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACGTTGACTCTACTGCTCAAAGCTCTTGA

Coding sequence (CDS)

ATGGGCATCTCTCAAAAGAATGTGTTGTTATTTTTCATTATCTTGGTAGCTTCTTCACAAGTTATGGTGGGAGCTAGAGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACGTTGACTCTACTGCTCAAAGCTCTTGA
Homology
[Close]
BLAST of CSPI03G22660 vs. TrEMBL
Match: A0A0A0LCX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60
           MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS
Sbjct: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60

Query: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS
Sbjct: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

[Close]
BLAST of CSPI03G22660 vs. TrEMBL
Match: B9I5L3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 1 

Query: 1   MGISQKN----VLLFFIILVAS-SQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  ++N    V++F  I++ S SQ ++ AR ++ E+W ++        ++  IQ LQR 
Sbjct: 1   MGSQRRNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEK--------IVGNIQSLQRG 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           PVPPSG +PCT IPG+ +G+C+L  MN AG H V   PP  PD+ +N  + A ++
Sbjct: 61  PVPPSGGSPCTHIPGRGSGKCSLGEMNFAG-HTVALAPPAFPDAIMNFGAAASTT 106

[Close]
BLAST of CSPI03G22660 vs. TrEMBL
Match: U7DW47_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1174s00200g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 1 

Query: 1   MGISQKNVLLFFIILVA-----SSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  +KN  L  II VA      S  ++ AR ++ E+W+K+   +        IQ LQRA
Sbjct: 1   MGSQRKNRCLTMIIFVAIVFGPCSHQILAARPIEGEQWLKQNLGN--------IQSLQRA 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDS 100
           PVPPS  + CT  PG+ +G C L  MN AGH   HA PP  PD+
Sbjct: 61  PVPPSRGSSCTHTPGRGSGHCPLGEMNFAGHIVAHA-PPAFPDA 95

[Close]
BLAST of CSPI03G22660 vs. TrEMBL
Match: A0A0D2PI32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 4   SQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLP---IIQVLQRAPVPPS 63
           S K  ++F I+L+ S   ++  R +        E+    +F+      IQ+L R PVPPS
Sbjct: 3   SFKVTVIFAILLMLSFHHVLAIRTL--------EEEQAKIFIFNKNLTIQLLPRGPVPPS 62

Query: 64  GRNPCTGIPGQSNGRCTLQTMNVAG----HHFVHARPPPIPDS 100
             NPCT IPG+S+GRCTL  MNVAG    +  VH  PP   DS
Sbjct: 63  AGNPCTNIPGRSHGRCTLTEMNVAGGGSHNRVVHHAPPTFSDS 97

[Close]
BLAST of CSPI03G22660 vs. TrEMBL
Match: A0A061F0W9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.6e-09
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1 

Query: 48 IIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVA-GHHFVHARPPP 96
          I+Q LQR PVPPSG NPCT IPG+S GRCTL  MNVA G   + A PPP
Sbjct: 44 IVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPPP 92

[Close]
BLAST of CSPI03G22660 vs. NCBI nr
Match: gi|700202788|gb|KGN57921.1| (hypothetical protein Csa_3G391390 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60
           MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS
Sbjct: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60

Query: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS
Sbjct: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

[Close]
BLAST of CSPI03G22660 vs. NCBI nr
Match: gi|659123868|ref|XP_008461883.1| (PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = 1 

Query: 1   MGISQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPS 60
           MGIS+KNVL+ FI LVASSQVMVGARVMK EKWMK+EK DH  F+LPIIQVLQRAPVPPS
Sbjct: 1   MGISRKNVLVVFITLVASSQVMVGARVMKGEKWMKDEKTDHRNFLLPIIQVLQRAPVPPS 60

Query: 61  GRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           GRNPCTGIPGQS+GRCTLQTMNVAGHHFVHARPP IPDS  +V STAQSS
Sbjct: 61  GRNPCTGIPGQSSGRCTLQTMNVAGHHFVHARPPAIPDSGPDVASTAQSS 110

[Close]
BLAST of CSPI03G22660 vs. NCBI nr
Match: gi|224123488|ref|XP_002319090.1| (hypothetical protein POPTR_0013s04080g [Populus trichocarpa])

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 1 

Query: 1   MGISQKN----VLLFFIILVAS-SQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  ++N    V++F  I++ S SQ ++ AR ++ E+W ++        ++  IQ LQR 
Sbjct: 1   MGSQRRNQCLTVMIFVTIVLGSCSQQVLAARPLEGERWSEK--------IVGNIQSLQRG 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 111
           PVPPSG +PCT IPG+ +G+C+L  MN AG H V   PP  PD+ +N  + A ++
Sbjct: 61  PVPPSGGSPCTHIPGRGSGKCSLGEMNFAG-HTVALAPPAFPDAIMNFGAAASTT 106

[Close]
BLAST of CSPI03G22660 vs. NCBI nr
Match: gi|566253991|ref|XP_006387358.1| (hypothetical protein POPTR_1174s00200g [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 44/104 (42.31%), Postives = 57/104 (54.81%), Query Frame = 1 

Query: 1   MGISQKNVLLFFIILVA-----SSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRA 60
           MG  +KN  L  II VA      S  ++ AR ++ E+W+K+   +        IQ LQRA
Sbjct: 1   MGSQRKNRCLTMIIFVAIVFGPCSHQILAARPIEGEQWLKQNLGN--------IQSLQRA 60

Query: 61  PVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDS 100
           PVPPS  + CT  PG+ +G C L  MN AGH   HA PP  PD+
Sbjct: 61  PVPPSRGSSCTHTPGRGSGHCPLGEMNFAGHIVAHA-PPAFPDA 95

[Close]
BLAST of CSPI03G22660 vs. NCBI nr
Match: gi|763759247|gb|KJB26578.1| (hypothetical protein B456_004G248500 [Gossypium raimondii])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 4   SQKNVLLFFIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLP---IIQVLQRAPVPPS 63
           S K  ++F I+L+ S   ++  R +        E+    +F+      IQ+L R PVPPS
Sbjct: 3   SFKVTVIFAILLMLSFHHVLAIRTL--------EEEQAKIFIFNKNLTIQLLPRGPVPPS 62

Query: 64  GRNPCTGIPGQSNGRCTLQTMNVAG----HHFVHARPPPIPDS 100
             NPCT IPG+S+GRCTL  MNVAG    +  VH  PP   DS
Sbjct: 63  AGNPCTNIPGRSHGRCTLTEMNVAGGGSHNRVVHHAPPTFSDS 97

The following BLAST results are available for this feature:
BLAST of CSPI03G22660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G22660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCX8_CUCSA8.0e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G391390 PE=4 SV=1[more]
B9I5L3_POPTR1.2e-1139.13Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04080g PE=4 SV=1[more]
U7DW47_POPTR1.5e-0942.31Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1174s00200g PE=4 SV=1[more]
A0A0D2PI32_GOSRA2.5e-0940.78Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248500 PE=4 SV=1[more]
A0A061F0W9_THECC9.6e-0967.35Uncharacterized protein OS=Theobroma cacao GN=TCM_026263 PE=4 SV=1[more]
BLAST of CSPI03G22660 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G22660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202788|gb|KGN57921.1|1.2e-55100.00hypothetical protein Csa_3G391390 [Cucumis sativus][more]
gi|659123868|ref|XP_008461883.1|1.4e-4585.45PREDICTED: uncharacterized protein LOC103500372 [Cucumis melo][more]
gi|224123488|ref|XP_002319090.1|1.7e-1139.13hypothetical protein POPTR_0013s04080g [Populus trichocarpa][more]
gi|566253991|ref|XP_006387358.1|2.1e-0942.31hypothetical protein POPTR_1174s00200g [Populus trichocarpa][more]
gi|763759247|gb|KJB26578.1|3.6e-0940.78hypothetical protein B456_004G248500 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G22660.1CSPI03G22660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 8..103
score: 1.9
NoneNo IPR availablePANTHERPTHR33592:SF2SUBFAMILY NOT NAMEDcoord: 8..103
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G22660Csa3G391390Cucumber (Chinese Long) v2cpicuB120
CSPI03G22660Cucsa.053530Cucumber (Gy14) v1cgycpiB038
CSPI03G22660CsGy3G021700Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G22660Bottle gourd (USVL1VR-Ls)cpilsiB214
CSPI03G22660Bottle gourd (USVL1VR-Ls)cpilsiB220
CSPI03G22660Melon (DHL92) v3.6.1cpimedB199
CSPI03G22660Melon (DHL92) v3.6.1cpimedB238
CSPI03G22660Cucumber (Gy14) v2cgybcpiB118
CSPI03G22660Silver-seed gourdcarcpiB0786
CSPI03G22660Silver-seed gourdcarcpiB0813
CSPI03G22660Cucumber (Chinese Long) v3cpicucB138
CSPI03G22660Cucumber (Chinese Long) v3cpicucB144
CSPI03G22660Cucumber (Chinese Long) v3cpicucB149
CSPI03G22660Watermelon (97103) v2cpiwmbB218
CSPI03G22660Watermelon (97103) v2cpiwmbB242
CSPI03G22660Watermelon (97103) v2cpiwmbB252
CSPI03G22660Wax gourdcpiwgoB307
CSPI03G22660Wild cucumber (PI 183967)cpicpiB064
CSPI03G22660Wild cucumber (PI 183967)cpicpiB102
CSPI03G22660Cucurbita maxima (Rimu)cmacpiB522
CSPI03G22660Cucurbita maxima (Rimu)cmacpiB599
CSPI03G22660Cucurbita maxima (Rimu)cmacpiB908
CSPI03G22660Cucurbita moschata (Rifu)cmocpiB512
CSPI03G22660Cucurbita moschata (Rifu)cmocpiB587
CSPI03G22660Cucumber (Chinese Long) v2cpicuB127
CSPI03G22660Melon (DHL92) v3.5.1cpimeB203
CSPI03G22660Melon (DHL92) v3.5.1cpimeB239
CSPI03G22660Watermelon (Charleston Gray)cpiwcgB266
CSPI03G22660Watermelon (97103) v1cpiwmB218
CSPI03G22660Watermelon (97103) v1cpiwmB241
CSPI03G22660Cucurbita pepo (Zucchini)cpecpiB247
CSPI03G22660Cucurbita pepo (Zucchini)cpecpiB724