CsGy3G021700 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G021700
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 19870366 .. 19871145 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGCTAGAGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACGTTGACTCTACTGCTCAAAGCTCTTGATGTTTGTTCGATGATGACGGTATAGAACCATGGAGAGGCAGCTGTGATCAATTACATGAAACTGAAAATTCTATTTTATTTATTGTCTTCTATTATTTATTTTTTTGGCTTGGGGGCATCAGACAAGAAATGGTTGCGACCCATGTTTGTGAAGTAATAATTTGTATACATAAATTAAAAAATAACAGTTTATTCGTTGAAGTTGAAGTTGTAAGATTCTTAATTTTCGACACTAATTTCATATGTAATAACCTGTACAAAAAAGCACATCCAGAATCGAAAATCTTGGGTGCAGTCTGGAGTTGCGTCAACTTAAAATACAGCAGGAGAAGAACCCAAAATAAATTTGCTATGTGGTAAACTTTTTTTAAAATATCTTTTTTCTAAATAAGGAAAATGAAGATATATGAGATTGTGAATTATATGTAATGTGTCGATCATGGAACTATGCTCGAAAAGATGTCAGTTTACTTTATTTAGCCTTCGGAGATTTTTGGAGATATTAAGTGA

mRNA sequence

ATGGTGGGAGCTAGAGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACCCTTCGGAGATTTTTGGAGATATTAAGTGA

Coding sequence (CDS)

ATGGTGGGAGCTAGAGTTATGAAAGTAGAGAAATGGATGAAGGAGGAAAAGAATGATCATAGTGTTTTTGTGTTACCTATCATTCAAGTCTTGCAACGTGCTCCAGTGCCACCGTCCGGTCGCAATCCATGCACCGGCATTCCAGGCCAAAGCAATGGTCGATGCACTCTTCAGACGATGAATGTTGCCGGTCATCATTTCGTCCATGCACGACCGCCACCTATTCCCGATTCCGCTCTCAACCCTTCGGAGATTTTTGGAGATATTAAGTGA

Protein sequence

MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPPIPDSALNPSEIFGDIK

Homology

[Close]

BLAST of CsGy3G021700 vs. NCBI nr
Match: KGN57921.1 (hypothetical protein Csa_3G391390 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 9.7e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 60
           MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM
Sbjct: 22  MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 81

Query: 61  NVAGHHFVHARPPPIPDSALN 82
           NVAGHHFVHARPPPIPDSALN
Sbjct: 82  NVAGHHFVHARPPPIPDSALN 102

[Close]

BLAST of CsGy3G021700 vs. NCBI nr
Match: XP_022995941.1 (uncharacterized protein LOC111491306 [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18
Identity = 57/81 (70.37%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1   MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 60
           M  ARVM  EKWMK +++    FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 24  MEAARVMSGEKWMKAKQD--MAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 83

Query: 61  NVAG--HHFVHARPPPIPDSA 80
           NVAG    FV A PP I D A
Sbjct: 84  NVAGGPGRFVQA-PPAIHDPA 100

[Close]

BLAST of CsGy3G021700 vs. NCBI nr
Match: XP_022931191.1 (uncharacterized protein LOC111437447 [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 3.3e-17
Identity = 56/81 (69.14%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1   MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 60
           M  ARVM   KWMK +++    FVLP IQVLQRAPVPPSGRNPC+ IPGQSNGRCTLQTM
Sbjct: 24  MEAARVMSGHKWMKAKQD--IAFVLP-IQVLQRAPVPPSGRNPCSTIPGQSNGRCTLQTM 83

Query: 61  NVAG--HHFVHARPPPIPDSA 80
           NVAG    FV A PP I D A
Sbjct: 84  NVAGGPGRFVQA-PPAIHDPA 100

[Close]

BLAST of CsGy3G021700 vs. NCBI nr
Match: OMO71985.1 (hypothetical protein CCACVL1_18003 [Corchorus capsularis])

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 27 IIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPP 75
          I+Q LQR PVPPSG NPCT  PG+S GRCTL  MNV G H   A PPP
Sbjct: 47 ILQSLQRGPVPPSGGNPCTNTPGRSRGRCTLTEMNVVGGHGGVAHPPP 94

[Close]

BLAST of CsGy3G021700 vs. NCBI nr
Match: XP_002319090.1 (uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetical protein POPTR_013G043600v3 [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 60
          ++ AR ++ E+W ++        ++  IQ LQR PVPPSG +PCT IPG+ +G+C+L  M
Sbjct: 27 VLAARPLEGERWSEK--------IVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEM 86

Query: 61 NVAGHHFVHARPPPIPDSALN 82
          N AG H V   PP  PD+ +N
Sbjct: 87 NFAG-HTVALAPPAFPDAIMN 98

[Close]

BLAST of CsGy3G021700 vs. TrEMBL
Match: tr|A0A0A0LCX8|A0A0A0LCX8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 60
           MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM
Sbjct: 22  MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 81

Query: 61  NVAGHHFVHARPPPIPDSALN 82
           NVAGHHFVHARPPPIPDSALN
Sbjct: 82  NVAGHHFVHARPPPIPDSALN 102

[Close]

BLAST of CsGy3G021700 vs. TrEMBL
Match: tr|A0A1R3HNP2|A0A1R3HNP2_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18003 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 27 IIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVAGHHFVHARPPP 75
          I+Q LQR PVPPSG NPCT  PG+S GRCTL  MNV G H   A PPP
Sbjct: 47 ILQSLQRGPVPPSGGNPCTNTPGRSRGRCTLTEMNVVGGHGGVAHPPP 94

[Close]

BLAST of CsGy3G021700 vs. TrEMBL
Match: tr|B9I5L3|B9I5L3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600v3 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTM 60
          ++ AR ++ E+W ++        ++  IQ LQR PVPPSG +PCT IPG+ +G+C+L  M
Sbjct: 27 VLAARPLEGERWSEK--------IVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEM 86

Query: 61 NVAGHHFVHARPPPIPDSALN 82
          N AG H V   PP  PD+ +N
Sbjct: 87 NFAG-HTVALAPPAFPDAIMN 98

[Close]

BLAST of CsGy3G021700 vs. TrEMBL
Match: tr|A0A061F0W9|A0A061F0W9_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026263 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 27 IIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVA-GHHFVHARPPP 75
          I+Q LQR PVPPSG NPCT IPG+S GRCTL  MNVA G   + A PPP
Sbjct: 44 IVQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGXXXMVAHPPP 92

[Close]

BLAST of CsGy3G021700 vs. TrEMBL
Match: tr|A0A2P5X8M0|A0A2P5X8M0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA21007 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 16  EKNDHSVFVLP---IIQVLQRAPVPPSGRNPCTGIPGQSNGRCTLQTMNVA--GHH--FV 75
           E+   ++F+L     IQ+L R PVPPS  NPCT IPG+S+GRCTL  MNVA  G H   V
Sbjct: 28  EEEQATIFILNKNLAIQLLPRGPVPPSAGNPCTNIPGRSHGRCTLTEMNVASGGSHNSVV 87

Query: 76  HARPPPIPDSALNPSEI 86
           H  PP   DS     EI
Sbjct: 88  HHAPPTFSDSVSKFHEI 104

The following BLAST results are available for this feature:

BLAST of CsGy3G021700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57921.1	9.7e-41	100.00	hypothetical protein Csa_3G391390 [Cucumis sativus]	[more]
XP_022995941.1	6.7e-18	70.37	uncharacterized protein LOC111491306 [Cucurbita maxima]	[more]
XP_022931191.1	3.3e-17	69.14	uncharacterized protein LOC111437447 [Cucurbita moschata]	[more]
OMO71985.1	3.4e-09	66.67	hypothetical protein CCACVL1_18003 [Corchorus capsularis]	[more]
XP_002319090.1	5.7e-09	43.21	uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetica...	[more]

BLAST of CsGy3G021700 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G021700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G021700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCX8\|A0A0A0LCX8_CUCSA	6.4e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1	[more]
tr\|A0A1R3HNP2\|A0A1R3HNP2_COCAP	2.2e-09	66.67	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18003 PE=4 ...	[more]
tr\|B9I5L3\|B9I5L3_POPTR	3.8e-09	43.21	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600v3 PE=...	[more]
tr\|A0A061F0W9\|A0A061F0W9_THECC	4.9e-09	67.35	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026263 PE=4 SV=1	[more]
tr\|A0A2P5X8M0\|A0A2P5X8M0_GOSBA	4.9e-09	50.65	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA21007 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021700.1	CsGy3G021700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR33592	FAMILY NOT NAMED	coord: 3..81
None	No IPR available	PANTHER	PTHR33592:SF2	SUBFAMILY NOT NAMED	coord: 3..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G021700	Csa3G391390	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G021700	CSPI03G22660	Wild cucumber (PI 183967)	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G021700	Cucurbita maxima (Rimu)	cgybcmaB383
CsGy3G021700	Cucurbita maxima (Rimu)	cgybcmaB392
CsGy3G021700	Cucurbita moschata (Rifu)	cgybcmoB355
CsGy3G021700	Cucurbita moschata (Rifu)	cgybcmoB363
CsGy3G021700	Melon (DHL92) v3.6.1	cgybmedB177
CsGy3G021700	Cucurbita pepo (Zucchini)	cgybcpeB338
CsGy3G021700	Cucurbita pepo (Zucchini)	cgybcpeB433
CsGy3G021700	Bottle gourd (USVL1VR-Ls)	cgyblsiB202
CsGy3G021700	Bottle gourd (USVL1VR-Ls)	cgyblsiB212
CsGy3G021700	Melon (DHL92) v3.5.1	cgybmeB176
CsGy3G021700	Watermelon (Charleston Gray)	cgybwcgB239
CsGy3G021700	Watermelon (97103) v1	cgybwmB206
CsGy3G021700	Silver-seed gourd	carcgybB0747
CsGy3G021700	Silver-seed gourd	carcgybB0771
CsGy3G021700	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G021700	Watermelon (97103) v2	cgybwmbB232
CsGy3G021700	Wax gourd	cgybwgoB294