Csa3G354480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G354480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 18230606 .. 18231978 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCTTCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTAGTCTTCAATTTTATAAGAGAACGAAAGATTTTGTTTCTGATACAATCAATCCATTTGTATGGATCTAAAGGTCGATAAGTATTCGGAATTTGAATTTCGGGAATAAAGTGGAGAAGAAAATGGTCCTGGAGTATATAAAGAAGGGGTGGGGTTTTAGCGGCTGCCTTTCTATATATTTACATATTTTCTTCTGAATGAATAGTTGGAGTACTCGATTTCTTTTTATGAACTGAATATTCCAATTCTCGAATGATTTGCCCTACTCTTTGATTAGGATGTGAGCCTCCAAAGTAAAGATGAAAATCAAAGAGAAAAAGGACAAAAACCAAAAGGAAGAAAAGAACAATACCCTTTAAGTCCCCCTTTATGCTATTGATTGGGTATCTATCACTTTTTTAATCCAAAGGATAAACCTTTTTTTTTTTCTTAAGTTTTTTTTTTTATGAGGAGATGCTTTATGTGGGAAAATACAGATTAATTGTTCTGTTCTTTGCCATAGAAAGTGATTGTTTTATTACTTTTGCTTGATTATCTATCCAATAGGGTGATATTTTTGCTGGTTGAAAAGAAAGTTTAAACAATGATGGATATTGGTGGAATCCCTGGTTCTGCATAAAGGTTAATTGAAGGTTTTTGATTCTTTCTGTGGGCTTTTCTTTACATATTAAACGTTATTCCTTTTATCCATAAAAGCTCTCGTAGATAACTCAGAGTAGTCAGTAAGTGTCTTCTTCTCAGAGGAGAACCTTTTGTGTTTTATCTAATTATTTGACATTTGGCAAAAAAAAAAAAAGTGAGATTTAAGATTTTTTTTCTTAAACTCCTAGCATTGAGTCTCTCCTGTGAAAAGACTTGTCCAACAAATTGACAAACGCCAGTTTCTTTCATGGTATTTAAGTTTATTGGATGCTGTATTTTAGGAACTCCTTGGTTGTTCGATTCTGTCTCAGCAAATAGAAATGGGTGTCTTTTGACTTAAAACTTTAAGATTGGATGATTCATATCACTAATTAAACTACTCTGCTTCTACTCAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

mRNA sequence

ATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

Coding sequence (CDS)

ATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

Protein sequence

MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK*
Homology
[Close]
BLAST of Csa3G354480 vs. TrEMBL
Match: A0A0A0LA54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354480 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60
          MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL
Sbjct: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60

Query: 61 GTFIDTDIKDLENDGAK 78
          GTFIDTDIKDLENDGAK
Sbjct: 61 GTFIDTDIKDLENDGAK 77

[Close]
BLAST of Csa3G354480 vs. NCBI nr
Match: gi|700202721|gb|KGN57854.1| (hypothetical protein Csa_3G354480 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60
          MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL
Sbjct: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60

Query: 61 GTFIDTDIKDLENDGAK 78
          GTFIDTDIKDLENDGAK
Sbjct: 61 GTFIDTDIKDLENDGAK 77

The following BLAST results are available for this feature:
BLAST of Csa3G354480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA54_CUCSA1.0e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354480 PE=4 SV=1[more]
BLAST of Csa3G354480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202721|gb|KGN57854.1|1.4e-36100.00hypothetical protein Csa_3G354480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU109469cucumber EST collection version 3.0transcribed_cluster
CU123067cucumber EST collection version 3.0transcribed_cluster
CU134385cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G354480.1Csa3G354480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU109469CU109469transcribed_cluster
CU134385CU134385transcribed_cluster
CU123067CU123067transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G354480CSPI03G21960Wild cucumber (PI 183967)cpicuB120
Csa3G354480Cucsa.012970Cucumber (Gy14) v1cgycuB291
Csa3G354480CsGy3G021330Cucumber (Gy14) v2cgybcuB118
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G354480Cucurbita pepo (Zucchini)cpecuB035
Csa3G354480Cucurbita pepo (Zucchini)cpecuB207
Csa3G354480Bottle gourd (USVL1VR-Ls)culsiB218
Csa3G354480Cucumber (Gy14) v2cgybcuB109
Csa3G354480Melon (DHL92) v3.6.1cumedB233
Csa3G354480Melon (DHL92) v3.6.1cumedB242
Csa3G354480Silver-seed gourdcarcuB0566
Csa3G354480Silver-seed gourdcarcuB1002
Csa3G354480Watermelon (97103) v2cuwmbB220
Csa3G354480Wax gourdcuwgoB289
Csa3G354480Cucumber (Gy14) v1cgycuB290
Csa3G354480Cucurbita maxima (Rimu)cmacuB322
Csa3G354480Cucurbita maxima (Rimu)cmacuB410
Csa3G354480Cucurbita moschata (Rifu)cmocuB311
Csa3G354480Cucurbita moschata (Rifu)cmocuB400
Csa3G354480Melon (DHL92) v3.5.1cumeB250
Csa3G354480Watermelon (Charleston Gray)cuwcgB235
Csa3G354480Watermelon (97103) v1cuwmB249