CSPI03G21960 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G21960
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr3 : 18417526 .. 18420083 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATTTCAAAATGGGCTGTTTTTCAATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTAGTCTTCAATTTTATAAGAGAACGAAAGATTTTGTCTCTGATACAATCAATCCATTTGTATGGATCTAAAGGTCGATAAGTATTCGGAATTTGAATTTCGGGAATAAAGTGGAGAAGAAAATGGTCCTGGAGTATATAAAGAAGGGGTGGGGTTTTAGCGGCTGCCTTTCTATATATTTACATATTTTCTTCTGAATGAATAGTTGGAGTACTCGATTTCTTTTTATGAACTGAATATTCCAATTCTCGAATGATTTGCCCTACTCTTTGATTAGGATGTGAGCCTCCAAAGTAAAGATGAAAATCAAAGAGAAAAAGGACAAAAACCAAAAGGAAGAAAAGAACAATACCCTTTAAGTCCCCCTTTATGCTATTGATTGGGTATCTATCACTTTTTTAATCCAAAGGATAAACCTTTTTTTTTTTCTTAAGTTTTTTTTTTATGAGGAGATGCTTTATGTGGGAAAATACAGATTAATTGTTCTGTTCTTTGCCATAGAAAGTGATTGTTTTATTACTTTTGCTTGATTATCTATCCAATAGGGTGATATTTTTGCTGGTTGAAAAGAAAGTTTAAACAATGATGGATATTGGTGGAATCCCTGGTTCTGCATAAAGGTTAATTGAAGGTTTTTGATTCTTTCTGTGGGCTTTTCTTTACATATTAAACGTTATTCCTTTTATCCATAAAAGCTCTCGTAGATAACTCAGAGTAGTCAGTAAGTGTCTTCTTCTCAGAGGAGAACCTTTTGTGTTTTATCTAATTATTTGACATTTGGCAAAAAAAAAAAGTGAGATTTAAGATTTTTTTTCTTAAACTCCTAGCATTGAGTCTCTCCTGTGAAAAGACTTGTCCAACAAATTGACAAACGCCAGTTTCTTTCATGGTATTTAAGTTTATTGGATGCTGTATTTTAGGAACTCCTTGGTTGTTCGATTCTGTCTCAGCAAATAGAAATGGGTGTCTTTTGACTTGAAACTTTAAGATTGGATGATTCATATCACTAATTAAACTACTCTGCTTCTACTCAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGATTCTGGTAGTTTTCTTTATATTATATAAATATAGAAATACCTTACCAATGATATCATATTTTAAAGTAAAGTACTGATATGGTATTCTTTTTGTTCACGGATTACCTTGAGCCACCTTTGCACTAAAATCAATGAAAGAAAGAAAAGAGAATAAGACTTCTTTGGGAGATATTCAAAATAGTTTTATATACTTGCTTTTGAAATTGTTATAAAATTTATACTAGAGTGGTTGGTAAAAGAAACCATGTTCTGATTTTATGGAAAATAAATGTTTCTAAATAATGAAAAGCAACTATGGAAAATGAGGGAAAACATAAATTTAAAGACTAGTTAGTCAAAACATGTTTTCACTAAACTTTTGTTCAGCAGTCCTTTGATCATTAATTAAGTGATGCAAGAGAAACCCACGTGAAATGAACCATTTGGAGTTTGAAGTTTATTACACTCCACTAGTACGTTAGCTTGTGATTTAACTCTTGTTTGCCTGAACACGTTTTGAAATGAGGCAAATGTTCGTGGAATATGTGATTGCATTCTACAATAACATTAAGGTACCTACTTGTTAATGAATTGTGATCTTTTCAATTTTAGTGGACAAGGCAGCGGCAATAATAGTTTGGAAAATATGATATTCTACACTAAGAGACAAATTGCACTGGGTTTAAAGATGCATCCAATAGCTTTGGAAGCACCTTTCTGTTATATATTAAAATTAATGAGCATTCCTTATGTAGAAGATTCTCATCAGCTGATATTTGAAGCAATTGTGAATTTTTGGAGAAACTTAACATATTGGTAGCTTTTATATTAAAAAACCATGGGCCAAGTAAAAGGAATGGATGCTTTTTTGAAGAATCTAATTTGGGACTCAGACCAGAACATATTGGCCAGATTTTATTATTATTATTATTATTTTGGCAAAATAGGAACAAACATTCTGAATTGACTTGTTTTCTAGCTTGTAGGAAGGTACTCTTGTTTGAAATCATTGCTGTAAATTGAGCTAAATTATACACTTGTCATACATAGGGAGGTAGGTTCTTCACTCCACCCACATGGGTACTCTGTAACTCTATGAAACTTGGGAATCTCATAAGGTAATTTCTGAACAGAAGAACATGGGTTTACCTTTTTAGATTAATGGCTTTTAGTTGCTTAATTTGG

mRNA sequence

ATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

Coding sequence (CDS)

ATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA
Homology
[Close]
BLAST of CSPI03G21960 vs. TrEMBL
Match: A0A0A0LA54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354480 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 39 RNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK 98
          +NLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK
Sbjct: 19 QNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK 77

[Close]
BLAST of CSPI03G21960 vs. NCBI nr
Match: gi|700202721|gb|KGN57854.1| (hypothetical protein Csa_3G354480 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.7e-24
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 1 

Query: 39 RNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK 98
          +NLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK
Sbjct: 19 QNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK 77

The following BLAST results are available for this feature:
BLAST of CSPI03G21960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G21960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA54_CUCSA1.9e-2498.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354480 PE=4 SV=1[more]
BLAST of CSPI03G21960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G21960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202721|gb|KGN57854.1|2.7e-2498.31hypothetical protein Csa_3G354480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21960.1CSPI03G21960.1mRNA