Csa3G354480.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G354480.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 18230606 .. 18231978 (+)
Sequence length234
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGTACTTTATATTCACTTGTAAGAATCAAACGCGGCAACCCTGACGATTCAATTCCTCTTCACTTGTTATCGTTAATCATCAACTTCTGATTTCTGGGCAAAGGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTAGTCTTCAATTTTATAAGAGAACGAAAGATTTTGTTTCTGATACAATCAATCCATTTGTATGGATCTAAAGGTCGATAAGTATTCGGAATTTGAATTTCGGGAATAAAGTGGAGAAGAAAATGGTCCTGGAGTATATAAAGAAGGGGTGGGGTTTTAGCGGCTGCCTTTCTATATATTTACATATTTTCTTCTGAATGAATAGTTGGAGTACTCGATTTCTTTTTATGAACTGAATATTCCAATTCTCGAATGATTTGCCCTACTCTTTGATTAGGATGTGAGCCTCCAAAGTAAAGATGAAAATCAAAGAGAAAAAGGACAAAAACCAAAAGGAAGAAAAGAACAATACCCTTTAAGTCCCCCTTTATGCTATTGATTGGGTATCTATCACTTTTTTAATCCAAAGGATAAACCTTTTTTTTTTTCTTAAGTTTTTTTTTTTATGAGGAGATGCTTTATGTGGGAAAATACAGATTAATTGTTCTGTTCTTTGCCATAGAAAGTGATTGTTTTATTACTTTTGCTTGATTATCTATCCAATAGGGTGATATTTTTGCTGGTTGAAAAGAAAGTTTAAACAATGATGGATATTGGTGGAATCCCTGGTTCTGCATAAAGGTTAATTGAAGGTTTTTGATTCTTTCTGTGGGCTTTTCTTTACATATTAAACGTTATTCCTTTTATCCATAAAAGCTCTCGTAGATAACTCAGAGTAGTCAGTAAGTGTCTTCTTCTCAGAGGAGAACCTTTTGTGTTTTATCTAATTATTTGACATTTGGCAAAAAAAAAAAAAGTGAGATTTAAGATTTTTTTTCTTAAACTCCTAGCATTGAGTCTCTCCTGTGAAAAGACTTGTCCAACAAATTGACAAACGCCAGTTTCTTTCATGGTATTTAAGTTTATTGGATGCTGTATTTTAGGAACTCCTTGGTTGTTCGATTCTGTCTCAGCAAATAGAAATGGGTGTCTTTTGACTTAAAACTTTAAGATTGGATGATTCATATCACTAATTAAACTACTCTGCTTCTACTCAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

mRNA sequence

ATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

Coding sequence (CDS)

ATGGGCCAGCCCAATTCAATCTGGTCTAGCGCGAAGCTCCATGTTCATAAGATTCAGAATTTGCGGATCTTCATCTTTCACAAGCCTCGCCACAGGCACCACTCTGATGAGAAACGACATATCGCGATTCGCAAGGTTTTGATTTTAAAAGATAAAGGCCTTAGGAGACTTCTACTGCTTGGTACTTTCATTGATACTGATATCAAAGATTTGGAGAATGATGGAGCTAAGTGA

Protein sequence

MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLLGTFIDTDIKDLENDGAK*
Homology
[Close]
BLAST of Csa3G354480.1 vs. TrEMBL
Match: A0A0A0LA54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354480 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60
          MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL
Sbjct: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60

Query: 61 GTFIDTDIKDLENDGAK 78
          GTFIDTDIKDLENDGAK
Sbjct: 61 GTFIDTDIKDLENDGAK 77

[Close]
BLAST of Csa3G354480.1 vs. NCBI nr
Match: gi|700202721|gb|KGN57854.1| (hypothetical protein Csa_3G354480 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60
          MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL
Sbjct: 1  MGQPNSIWSSAKLHVHKIQNLRIFIFHKPRHRHHSDEKRHIAIRKVLILKDKGLRRLLLL 60

Query: 61 GTFIDTDIKDLENDGAK 78
          GTFIDTDIKDLENDGAK
Sbjct: 61 GTFIDTDIKDLENDGAK 77

The following BLAST results are available for this feature:
BLAST of Csa3G354480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA54_CUCSA1.0e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G354480 PE=4 SV=1[more]
BLAST of Csa3G354480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202721|gb|KGN57854.1|1.4e-36100.00hypothetical protein Csa_3G354480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G354480Csa3G354480gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G354480.1Csa3G354480.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G354480.1.cds1Csa3G354480.1.cds1CDS
Csa3G354480.1.cds2Csa3G354480.1.cds2CDS
Csa3G354480.1.cds3Csa3G354480.1.cds3CDS