Csa3G313230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G313230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Armadillo/beta-catenin-like repeat-containing protein
Location	Chr3 : 17498801 .. 17499897 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGCAGAAGACTAACCACTTTCAGCCTCGAGATAAGCGTCAATATCCTAATTGAAGAAGTTCGCCAGTCCGGTAGGGATGGAGGTGTGGTTGGCGGTGGCTGCAGAAAGGGAGGTTGGCAGGACTACTGATGGTTGAAAGGCAATCGTGCCCGTGGGTGGCAAAAGACTGATCAGCGGAAAGGGGAAGCTGATCAGTTGCTGTTGGGGTGGTTGTGATTGAATTGACAGTAGTGGTAGGAGATATTGGTCGACAGCAGCGTCTCTAGTGGGAGAAATGGCAGCGGCGGCAACGTCAGTGATGTTGGCGGTAGCAGTGAGGTTATTGCCAATGGTCAAGAGTTTTGTGTTAGGTTTTTCTATTGGTTGCTTTCGTTAATGACAGGTAGGATTTCATTGTTCCTCTGATCTGATATCATATTGAACAAGAGGAATATGAGAAAGTACAAGTTCTACGTGAAAAACCCTCGTACAGGGAGAAAAAACTACGATAGAAGCCTTTCTTATTATTTTTTGATGATCAAAAGAGTACAGGGGGAAGAATATATATATATGTCATAATAAGCCCCAACAAAAAAGGAAATAAAACTAGTGTACAATCAATTATACAAATATCCTTAGGGCTATAAACCCTAATTGTTTATACTAGACCCTAATTTCCAACAATATTTTAATTGTTTTTACAGTATTCTTTTGTTTCCTAGTGAAATATGTTATATGATCTTGATGTTTCATGTAGCTGCTTGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCAAGTTTAGTGACTGAAATATCTCCGGGATTACTTCTTAAAGATGCTGCCTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGACCTTCAAAGACTGGTATAAGCTTTTTCTGTTTTGTATAACACTCTTCTAATTATTTGTCTAACTGTTATATTATCTCCCATTTATTCGTTCCTAGGTTTAATGGTGCTTTATCCCTCGAGATCTCCAATGATCATCCAAACATGCGTATCATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGGTATTGTCTTAA

mRNA sequence

ATGGCAGGCAGAAGACTAACCACTTTCAGCCTCGAGATAAGCGTCAATATCCTAATTGAAGAAGTTCGCCAGTCCGGTAGGGATGGAGGTGTGGTTGGCGGTGGCTGCAGAAAGGGAGGCAATCGTGCCCGTGGGTGGCAAAAGACTGATCAGCGGAAAGGGGAAGCTGATCAGTTGCTGTTGGGCAGCGTCTCTAGTGGGAGAAATGGCAGCGGCGGCAACGTCAGTGATGTTGGCGGTAGCAGTGAGGTTATTGCCAATGGTCAAGAGTTTTGTCTGCTTGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCAAGTTTAGTGACTGAAATATCTCCGGGATTACTTCTTAAAGATGCTGCCTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGACCTTCAAAGACTGGTTTAATGGTGCTTTATCCCTCGAGATCTCCAATGATCATCCAAACATGCGTATCATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGGTATTGTCTTAA

Coding sequence (CDS)

ATGGCAGGCAGAAGACTAACCACTTTCAGCCTCGAGATAAGCGTCAATATCCTAATTGAAGAAGTTCGCCAGTCCGGTAGGGATGGAGGTGTGGTTGGCGGTGGCTGCAGAAAGGGAGGCAATCGTGCCCGTGGGTGGCAAAAGACTGATCAGCGGAAAGGGGAAGCTGATCAGTTGCTGTTGGGCAGCGTCTCTAGTGGGAGAAATGGCAGCGGCGGCAACGTCAGTGATGTTGGCGGTAGCAGTGAGGTTATTGCCAATGGTCAAGAGTTTTGTCTGCTTGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCAAGTTTAGTGACTGAAATATCTCCGGGATTACTTCTTAAAGATGCTGCCTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGACCTTCAAAGACTGGTTTAATGGTGCTTTATCCCTCGAGATCTCCAATGATCATCCAAACATGCGTATCATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGGTATTGTCTTAA

Protein sequence

MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLLLGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEVLS*

Homology

[Close]

BLAST of Csa3G313230 vs. TrEMBL
Match: A0A0A0L7M2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G313230 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 4.1e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1


Query: 1   MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL 60
           MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL
Sbjct: 1   MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL 60

Query: 61  LGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL 120
           LGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL
Sbjct: 61  LGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL 120

Query: 121 LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV 180
           LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV
Sbjct: 121 LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV 180

Query: 181 LS 183
           LS
Sbjct: 181 LS 182

[Close]

BLAST of Csa3G313230 vs. TrEMBL
Match: M5Y4M1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023343m1g PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSIL+EAMNGC + VTEI+PGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 326 LLGPVVVSILKEAMNGCPTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 385

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LE+SNDHPNMRII RKVALILGQWVSE+
Sbjct: 386 LELSNDHPNMRIIHRKVALILGQWVSEI 413

[Close]

BLAST of Csa3G313230 vs. TrEMBL
Match: A0A067ENS5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001804mg PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGCS+ VTEI+PGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 455 LLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 514

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           L++SNDHPNM II RKVA+ILGQWVSE+
Sbjct: 515 LDLSNDHPNMHIIHRKVAIILGQWVSEI 542

[Close]

BLAST of Csa3G313230 vs. TrEMBL
Match: W9R0I1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023996 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGC + VTE++PGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 442 LLGPVVVSILQEAMNGCPTSVTELTPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 501

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           L++SNDHPNMRII RKVALILGQWVSE+
Sbjct: 502 LDLSNDHPNMRIIHRKVALILGQWVSEI 529

[Close]

BLAST of Csa3G313230 vs. TrEMBL
Match: V4SZN4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010971mg PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGCS+ VTEI+PGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 455 LLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 514

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           L++SNDHPNM II RKVA+ILGQWVSE+
Sbjct: 515 LDLSNDHPNMHIIHRKVAIILGQWVSEI 542

[Close]

BLAST of Csa3G313230 vs. TAIR10
Match: AT3G08960.1 (AT3G08960.1 ARM repeat superfamily protein)

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-36
Identity = 71/88 (80.68%), Postives = 75/88 (85.23%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGP+VVSILQEAMN C   VTEI+P LLLKDAAY A AYVYYELSNYL F+DWFNGALS
Sbjct: 455 LLGPIVVSILQEAMNNCPPSVTEITPALLLKDAAYAATAYVYYELSNYLNFRDWFNGALS 514

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LE+SNDHPN RII RKVA+ILG WVSE+
Sbjct: 515 LELSNDHPNRRIIHRKVAMILGHWVSEI 542

[Close]

BLAST of Csa3G313230 vs. NCBI nr
Match: gi|700202675|gb|KGN57808.1| (hypothetical protein Csa_3G313230 [Cucumis sativus])

HSP 1 Score: 362.1 bits (928), Expect = 5.8e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 1


Query: 1   MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL 60
           MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL
Sbjct: 1   MAGRRLTTFSLEISVNILIEEVRQSGRDGGVVGGGCRKGGNRARGWQKTDQRKGEADQLL 60

Query: 61  LGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL 120
           LGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL
Sbjct: 61  LGSVSSGRNGSGGNVSDVGGSSEVIANGQEFCLLGPVVVSILQEAMNGCSSLVTEISPGL 120

Query: 121 LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV 180
           LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV
Sbjct: 121 LLKDAAYGAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSEV 180

Query: 181 LS 183
           LS
Sbjct: 181 LS 182

[Close]

BLAST of Csa3G313230 vs. NCBI nr
Match: gi|778680809|ref|XP_011651399.1| (PREDICTED: importin-11 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 3.5e-41
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSE+
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEI 545

[Close]

BLAST of Csa3G313230 vs. NCBI nr
Match: gi|659114414|ref|XP_008457041.1| (PREDICTED: importin-11 [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-40
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAM+GCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS
Sbjct: 458 LLGPVVVSILQEAMSGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 517

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LEISNDHPNMRIIRRKVALILGQWVSE+
Sbjct: 518 LEISNDHPNMRIIRRKVALILGQWVSEI 545

[Close]

BLAST of Csa3G313230 vs. NCBI nr
Match: gi|470121067|ref|XP_004296605.1| (PREDICTED: importin-11 [Fragaria vesca subsp. vesca])

HSP 1 Score: 166.0 bits (419), Expect = 6.1e-38
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSILQEAMNGC + VTEI+PGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 455 LLGPVVVSILQEAMNGCPTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 514

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LE+SNDHPNMRII RKVALILGQWVSE+
Sbjct: 515 LELSNDHPNMRIIHRKVALILGQWVSEI 542

[Close]

BLAST of Csa3G313230 vs. NCBI nr
Match: gi|596286216|ref|XP_007225581.1| (hypothetical protein PRUPE_ppa023343m1g, partial [Prunus persica])

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-37
Identity = 79/88 (89.77%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 93  LLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLTFKDWFNGALS 152
           LLGPVVVSIL+EAMNGC + VTEI+PGLLLKDAAYGAAAYVYYELSNYL+FKDWFNGALS
Sbjct: 326 LLGPVVVSILKEAMNGCPTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 385

Query: 153 LEISNDHPNMRIIRRKVALILGQWVSEV 181
           LE+SNDHPNMRII RKVALILGQWVSE+
Sbjct: 386 LELSNDHPNMRIIHRKVALILGQWVSEI 413

The following BLAST results are available for this feature:

BLAST of Csa3G313230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7M2_CUCSA	4.1e-97	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G313230 PE=4 SV=1	[more]
M5Y4M1_PRUPE	1.2e-37	89.77	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023343m1g PE=4 ...	[more]
A0A067ENS5_CITSI	1.6e-37	88.64	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001804mg PE=4 SV=1	[more]
W9R0I1_9ROSA	1.6e-37	88.64	Uncharacterized protein OS=Morus notabilis GN=L484_023996 PE=4 SV=1	[more]
V4SZN4_9ROSI	1.6e-37	88.64	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010971mg PE=4 SV=1	[more]

BLAST of Csa3G313230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G08960.1	1.6e-36	80.68	ARM repeat superfamily protein	[more]

BLAST of Csa3G313230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202675\|gb\|KGN57808.1\|	5.8e-97	100.00	hypothetical protein Csa_3G313230 [Cucumis sativus]	[more]
gi\|778680809\|ref\|XP_011651399.1\|	3.5e-41	98.86	PREDICTED: importin-11 [Cucumis sativus]	[more]
gi\|659114414\|ref\|XP_008457041.1\|	1.3e-40	97.73	PREDICTED: importin-11 [Cucumis melo]	[more]
gi\|470121067\|ref\|XP_004296605.1\|	6.1e-38	90.91	PREDICTED: importin-11 [Fragaria vesca subsp. vesca]	[more]
gi\|596286216\|ref\|XP_007225581.1\|	1.8e-37	89.77	hypothetical protein PRUPE_ppa023343m1g, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008536	Ran GTPase binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU126838	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G313230.1	Csa3G313230.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU126838	CU126838	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10997	IMPORTIN-7, 8, 11	coord: 93..182 score: 5.4
None	No IPR available	PANTHER	PTHR10997:SF7	IMPORTIN-11	coord: 93..182 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G313230	Cla013198	Watermelon (97103) v1	cuwmB245
Csa3G313230	MELO3C020253	Melon (DHL92) v3.5.1	cumeB246
Csa3G313230	ClCG05G011300	Watermelon (Charleston Gray)	cuwcgB233
Csa3G313230	CSPI03G21430	Wild cucumber (PI 183967)	cpicuB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G313230	Wax gourd	cuwgoB271
Csa3G313230	Cucumber (Gy14) v1	cgycuB525
Csa3G313230	Cucurbita maxima (Rimu)	cmacuB242
Csa3G313230	Cucurbita maxima (Rimu)	cmacuB455
Csa3G313230	Cucurbita moschata (Rifu)	cmocuB229
Csa3G313230	Cucurbita moschata (Rifu)	cmocuB442
Csa3G313230	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G313230	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G313230	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G313230	Cucumber (Gy14) v2	cgybcuB109
Csa3G313230	Melon (DHL92) v3.6.1	cumedB239
Csa3G313230	Silver-seed gourd	carcuB0538
Csa3G313230	Silver-seed gourd	carcuB0780
Csa3G313230	Watermelon (97103) v2	cuwmbB218