Cla013198 (gene) Watermelon (97103) v1

NameCla013198
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionImportin-11 (AHRD V1 **-- E2AYU4_CAMFO)
LocationChr5 : 12664369 .. 12665645 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTGTGGACGGAGAAACTACGACCATGTGCTGAAGCTTTATATATTGTATTGTTTGAAAACCATAGTCAGGTATGCAAGATTTGTTTTTACTTTTCCCGTATAATTATATACTTTAATTGTTTATACTTTTATAGTATTCATTTGTTTCTAAGTGAAATATGTGGTTATATGATATTGATGTTTCATATAGCTGCTCGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCTAGTTTAGTGACTGAAATATCTCCAGGATTGCTTCTCAAAGATGCTGCTTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGAGCTTCAAAGACTGGTATAAGCTTTTCCATTTATTAGTCTCTTTTCAGTCTATTCTTTATCTGTTCAGTTCGCTAATTGTTTTCGATTATGCAACTTCTTATTTACTGGTCTCTATTAGTAGGGGCATACTAAAGAGGATTACAATTCATCTACACTATTTTTGTTATAATGAAACAGTTTATTATATTATCTCCTACTATTCATTCCTAGGTTTAATGGTGCTTTATCCCTTGAGATCTCCAATGATCATCCAAACATGCGTATTATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGGTAATAGTCTTAATGTATACGTTCATATATTTGTATGAGGGATTCTTAACCTCTTGCAGTGTATGTTATAATGGTCAGTAAGTTGTAAATAATCTTGTGTTCTTTCATGTTATAATCTTGTATATAATCCTGTTGTTATAAAGTGCTATTGATCTGGAAGTTTTTACTACAATCTTGTGTTCTTTCATGTTATAAATTAAATTTTATTAAGGTTAAACACTCCGTAAGTAGATGGATTTTACTTTAAATGTGCTAGCTTGTTGGCAAATTGGCTTTGGCAAAATGAGAATTTAAAGACTCAGAATGTGCTAGCTTGTTGGGGGTTAGAAATTGAGAATTAAGGACTCACAAGAAACTCTTGTTGGCAAAATGACTTTGGTATGAGTAGCGAAGAACCTGATTCTCATCTTTCGAAAGCTGAAAATGTTGGGAAAGATTTTGAAGATTTTCTCGAAGTCTATTTAGCAGATTTATTCTAAGCAGATAATTTGGCTCATCAGAGTGAGAAAACTGCTGTTAATGCTGGTCAAGCTTCCTTTTCTGAATCAATTCCGCTTAGACTTCCTTATATAGAAAAGTGTGGTTTGCAATTGAAGGAAATTGGCCCTCTTGGCTGCAATTAA

mRNA sequence

ATGGTTTTGTGGACGGAGAAACTACGACCATGTGCTGAAGCTTTATATATTGTATTGTTTGAAAACCATAGTCAGCTGCTCGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCTAGTTTAGTGACTGAAATATCTCCAGGATTGCTTCTCAAAGATGCTGCTTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGAGCTTCAAAGACTGGTTTAATGGTGCTTTATCCCTTGAGATCTCCAATGATCATCCAAACATGCGTATTATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGAGTGAGAAAACTGCTGTTAATGCTGGTCAAGCTTCCTTTTCTGAATCAATTCCGCTTAGACTTCCTTATATAGAAAAGTGTGGTTTGCAATTGAAGGAAATTGGCCCTCTTGGCTGCAATTAA

Coding sequence (CDS)

ATGGTTTTGTGGACGGAGAAACTACGACCATGTGCTGAAGCTTTATATATTGTATTGTTTGAAAACCATAGTCAGCTGCTCGGCCCTGTTGTGGTTTCTATCCTTCAAGAGGCAATGAATGGTTGCTCTAGTTTAGTGACTGAAATATCTCCAGGATTGCTTCTCAAAGATGCTGCTTATGGTGCTGCTGCATATGTTTATTATGAGCTTTCTAATTACCTGAGCTTCAAAGACTGGTTTAATGGTGCTTTATCCCTTGAGATCTCCAATGATCATCCAAACATGCGTATTATCCGTCGGAAAGTTGCACTAATATTGGGACAATGGGTTTCTGAGAGTGAGAAAACTGCTGTTAATGCTGGTCAAGCTTCCTTTTCTGAATCAATTCCGCTTAGACTTCCTTATATAGAAAAGTGTGGTTTGCAATTGAAGGAAATTGGCCCTCTTGGCTGCAATTAA

Protein sequence

MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSESEKTAVNAGQASFSESIPLRLPYIEKCGLQLKEIGPLGCN
BLAST of Cla013198 vs. Swiss-Prot
Match: IPO11_HUMAN (Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-13
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 1

Query: 4   WTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAA 63
           W   LRPC E L+I +F  ++Q L PV++ ++Q  + G +++  E    LL+KDA Y A 
Sbjct: 401 WKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQ-TLQGPTNV--EDMNALLIKDAVYNAV 460

Query: 64  AYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSESEKT 117
               YEL + + F  WF   L  E+   H   + +RR+V  ++GQW+S   K+
Sbjct: 461 GLAAYELFDSVDFDQWFKNQLLPELQVIHNRYKPLRRRVIWLIGQWISVKFKS 510

BLAST of Cla013198 vs. Swiss-Prot
Match: IPO11_MOUSE (Importin-11 OS=Mus musculus GN=Ipo11 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-13
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 1

Query: 4   WTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAYGAA 63
           W   LRPC E L+I +F  ++Q L PV++ ++Q  + G +++  E    LL+KDA Y A 
Sbjct: 401 WKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQ-TLEGPTNV--EDMNALLIKDAVYNAV 460

Query: 64  AYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSESEKT 117
               +EL + + F  WF   L  E+   H   + +RR+V  ++GQW+S   K+
Sbjct: 461 GLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKS 510

BLAST of Cla013198 vs. TrEMBL
Match: M5Y4M1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023343m1g PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLLGPVVVSIL+EAMNGC + VTEI+PGLLLKDAAY
Sbjct: 301 MVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILKEAMNGCPTSVTEITPGLLLKDAAY 360

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSFKDWFNGALSLE+SNDHPNMRII RKVALILGQWVSE
Sbjct: 361 GAAAYVYYELSNYLSFKDWFNGALSLELSNDHPNMRIIHRKVALILGQWVSE 412

BLAST of Cla013198 vs. TrEMBL
Match: A0A067ENS5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001804mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-52
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCS+ VTEI+PGLLLKDAAY
Sbjct: 430 MVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAY 489

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSFKDWFNGALSL++SNDHPNM II RKVA+ILGQWVSE
Sbjct: 490 GAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE 541

BLAST of Cla013198 vs. TrEMBL
Match: V4SZN4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010971mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-52
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCS+ VTEI+PGLLLKDAAY
Sbjct: 430 MVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAY 489

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSFKDWFNGALSL++SNDHPNM II RKVA+ILGQWVSE
Sbjct: 490 GAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE 541

BLAST of Cla013198 vs. TrEMBL
Match: A0A0B0M9W3_GOSAR (Importin-11 OS=Gossypium arboreum GN=F383_18202 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLL P+VVSILQEAMNGC + VTEI+PGLLLKDAAY
Sbjct: 421 MVQWTEKLRPCAEALYIVLFENHSQLLAPIVVSILQEAMNGCPTSVTEITPGLLLKDAAY 480

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSFKDWF+GALSLE+SNDHPNMRII RKVALILGQWVSE
Sbjct: 481 GAAAYVYYELSNYLSFKDWFDGALSLELSNDHPNMRIIHRKVALILGQWVSE 532

BLAST of Cla013198 vs. TrEMBL
Match: A0A0D2QCE7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262500 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-51
Identity = 101/112 (90.18%), Postives = 106/112 (94.64%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLL P+VVSILQEAMNGC +  TEI+PGLLLKDAAY
Sbjct: 278 MVQWTEKLRPCAEALYIVLFENHSQLLAPIVVSILQEAMNGCPTSTTEITPGLLLKDAAY 337

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSF+DWFNGALSLE+SNDHPNMRII RKVALILGQWVSE
Sbjct: 338 GAAAYVYYELSNYLSFRDWFNGALSLELSNDHPNMRIIHRKVALILGQWVSE 389

BLAST of Cla013198 vs. NCBI nr
Match: gi|778680809|ref|XP_011651399.1| (PREDICTED: importin-11 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 5.4e-56
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY
Sbjct: 433 MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 492

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYL+FKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE
Sbjct: 493 GAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 544

BLAST of Cla013198 vs. NCBI nr
Match: gi|659114414|ref|XP_008457041.1| (PREDICTED: importin-11 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 2.1e-55
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAM+GCSSLVTEISPGLLLKDAAY
Sbjct: 433 MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMSGCSSLVTEISPGLLLKDAAY 492

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYL+FKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE
Sbjct: 493 GAAAYVYYELSNYLTFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 544

BLAST of Cla013198 vs. NCBI nr
Match: gi|470121067|ref|XP_004296605.1| (PREDICTED: importin-11 [Fragaria vesca subsp. vesca])

HSP 1 Score: 215.3 bits (547), Expect = 7.3e-53
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGC + VTEI+PGLLLKDAAY
Sbjct: 430 MVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCPTSVTEITPGLLLKDAAY 489

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSFKDWFNGALSLE+SNDHPNMRII RKVALILGQWVSE
Sbjct: 490 GAAAYVYYELSNYLSFKDWFNGALSLELSNDHPNMRIIHRKVALILGQWVSE 541

BLAST of Cla013198 vs. NCBI nr
Match: gi|596286216|ref|XP_007225581.1| (hypothetical protein PRUPE_ppa023343m1g, partial [Prunus persica])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLLGPVVVSIL+EAMNGC + VTEI+PGLLLKDAAY
Sbjct: 301 MVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILKEAMNGCPTSVTEITPGLLLKDAAY 360

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSFKDWFNGALSLE+SNDHPNMRII RKVALILGQWVSE
Sbjct: 361 GAAAYVYYELSNYLSFKDWFNGALSLELSNDHPNMRIIHRKVALILGQWVSE 412

BLAST of Cla013198 vs. NCBI nr
Match: gi|645236053|ref|XP_008224554.1| (PREDICTED: importin-11 isoform X1 [Prunus mume])

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-52
Identity = 103/112 (91.96%), Postives = 108/112 (96.43%), Query Frame = 1

Query: 1   MVLWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSSLVTEISPGLLLKDAAY 60
           MV WTEKLRPCAEALYIVLFENHSQLLGP+VVSIL+EAMNGC + VTEI+PGLLLKDAAY
Sbjct: 430 MVQWTEKLRPCAEALYIVLFENHSQLLGPIVVSILKEAMNGCPTSVTEITPGLLLKDAAY 489

Query: 61  GAAAYVYYELSNYLSFKDWFNGALSLEISNDHPNMRIIRRKVALILGQWVSE 113
           GAAAYVYYELSNYLSFKDWFNGALSLE+SNDHPNMRII RKVALILGQWVSE
Sbjct: 490 GAAAYVYYELSNYLSFKDWFNGALSLELSNDHPNMRIIHRKVALILGQWVSE 541

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IPO11_HUMAN2.5e-1335.40Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1[more]
IPO11_MOUSE5.7e-1334.51Importin-11 OS=Mus musculus GN=Ipo11 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
M5Y4M1_PRUPE1.5e-5292.86Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023343m1g PE=4 ... [more]
A0A067ENS5_CITSI1.9e-5291.96Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001804mg PE=4 SV=1[more]
V4SZN4_9ROSI1.9e-5291.96Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010971mg PE=4 SV=1[more]
A0A0B0M9W3_GOSAR1.3e-5191.07Importin-11 OS=Gossypium arboreum GN=F383_18202 PE=4 SV=1[more]
A0A0D2QCE7_GOSRA2.1e-5190.18Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778680809|ref|XP_011651399.1|5.4e-5699.11PREDICTED: importin-11 [Cucumis sativus][more]
gi|659114414|ref|XP_008457041.1|2.1e-5598.21PREDICTED: importin-11 [Cucumis melo][more]
gi|470121067|ref|XP_004296605.1|7.3e-5393.75PREDICTED: importin-11 [Fragaria vesca subsp. vesca][more]
gi|596286216|ref|XP_007225581.1|2.1e-5292.86hypothetical protein PRUPE_ppa023343m1g, partial [Prunus persica][more]
gi|645236053|ref|XP_008224554.1|2.8e-5291.96PREDICTED: importin-11 isoform X1 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0008536 Ran GTPase binding
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013198Cla013198.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 5..110
score: 1.
NoneNo IPR availablePANTHERPTHR10997IMPORTIN-7, 8, 11coord: 1..112
score: 3.9
NoneNo IPR availablePANTHERPTHR10997:SF7IMPORTIN-11coord: 1..112
score: 3.9