Csa3G263230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G263230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 16207603 .. 16207977 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACACTTGTCCTCCTTCTTCGACTAGCAAAGAGCACTCCAATGGGACGAAGTCCTTTGCCTTTCTCCAGAATCCAAACTTCTAACCCCACTCCAATGCGACGAAGTCCTTTGTTGCCTGGCCATTTACCACAATCCCTCATTGTCAACATAGATTTTGAGCGTCCTCACCTAAATGTTCCAGTAATTACCCTATCTGAAGGTGATGCTGCAACAGAGGATGTCCAAGATTATGGAACGCTGCATGATACTGCACCCCATGATGAGACTTTGCCAGACTCGAGAACTTCATTGATCGTTTATGACCCACTCTTCTACAACATACTTATGAGAGAAGACACAGGTGAGATGAGCTCAGCAAGAACAACTTAA

mRNA sequence

ATGATTACACTTGTCCTCCTTCTTCGACTAGCAAAGAGCACTCCAATGGGACGAAGTCCTTTGCCTTTCTCCAGAATCCAAACTTCTAACCCCACTCCAATGCGACGAAGTCCTTTGTTGCCTGGCCATTTACCACAATCCCTCATTGTCAACATAGATTTTGAGCGTCCTCACCTAAATGTTCCAGTAATTACCCTATCTGAAGGTGATGCTGCAACAGAGGATGTCCAAGATTATGGAACGCTGCATGATACTGCACCCCATGATGAGACTTTGCCAGACTCGAGAACTTCATTGATCGTTTATGACCCACTCTTCTACAACATACTTATGAGAGAAGACACAGGTGAGATGAGCTCAGCAAGAACAACTTAA

Coding sequence (CDS)

ATGATTACACTTGTCCTCCTTCTTCGACTAGCAAAGAGCACTCCAATGGGACGAAGTCCTTTGCCTTTCTCCAGAATCCAAACTTCTAACCCCACTCCAATGCGACGAAGTCCTTTGTTGCCTGGCCATTTACCACAATCCCTCATTGTCAACATAGATTTTGAGCGTCCTCACCTAAATGTTCCAGTAATTACCCTATCTGAAGGTGATGCTGCAACAGAGGATGTCCAAGATTATGGAACGCTGCATGATACTGCACCCCATGATGAGACTTTGCCAGACTCGAGAACTTCATTGATCGTTTATGACCCACTCTTCTACAACATACTTATGAGAGAAGACACAGGTGAGATGAGCTCAGCAAGAACAACTTAA

Protein sequence

MITLVLLLRLAKSTPMGRSPLPFSRIQTSNPTPMRRSPLLPGHLPQSLIVNIDFERPHLNVPVITLSEGDAATEDVQDYGTLHDTAPHDETLPDSRTSLIVYDPLFYNILMREDTGEMSSARTT*

Homology

[Close]

BLAST of Csa3G263230 vs. TrEMBL
Match: A0A0A0L6W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263230 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.0e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MITLVLLLRLAKSTPMGRSPLPFSRIQTSNPTPMRRSPLLPGHLPQSLIVNIDFERPHLN 60
           MITLVLLLRLAKSTPMGRSPLPFSRIQTSNPTPMRRSPLLPGHLPQSLIVNIDFERPHLN
Sbjct: 1   MITLVLLLRLAKSTPMGRSPLPFSRIQTSNPTPMRRSPLLPGHLPQSLIVNIDFERPHLN 60

Query: 61  VPVITLSEGDAATEDVQDYGTLHDTAPHDETLPDSRTSLIVYDPLFYNILMREDTGEMSS 120
           VPVITLSEGDAATEDVQDYGTLHDTAPHDETLPDSRTSLIVYDPLFYNILMREDTGEMSS
Sbjct: 61  VPVITLSEGDAATEDVQDYGTLHDTAPHDETLPDSRTSLIVYDPLFYNILMREDTGEMSS 120

Query: 121 ARTT 125
           ARTT
Sbjct: 121 ARTT 124

[Close]

BLAST of Csa3G263230 vs. NCBI nr
Match: gi|700202592|gb|KGN57725.1| (hypothetical protein Csa_3G263230 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.3e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MITLVLLLRLAKSTPMGRSPLPFSRIQTSNPTPMRRSPLLPGHLPQSLIVNIDFERPHLN 60
           MITLVLLLRLAKSTPMGRSPLPFSRIQTSNPTPMRRSPLLPGHLPQSLIVNIDFERPHLN
Sbjct: 1   MITLVLLLRLAKSTPMGRSPLPFSRIQTSNPTPMRRSPLLPGHLPQSLIVNIDFERPHLN 60

Query: 61  VPVITLSEGDAATEDVQDYGTLHDTAPHDETLPDSRTSLIVYDPLFYNILMREDTGEMSS 120
           VPVITLSEGDAATEDVQDYGTLHDTAPHDETLPDSRTSLIVYDPLFYNILMREDTGEMSS
Sbjct: 61  VPVITLSEGDAATEDVQDYGTLHDTAPHDETLPDSRTSLIVYDPLFYNILMREDTGEMSS 120

Query: 121 ARTT 125
           ARTT
Sbjct: 121 ARTT 124

The following BLAST results are available for this feature:

BLAST of Csa3G263230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6W4_CUCSA	9.0e-64	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263230 PE=4 SV=1	[more]

BLAST of Csa3G263230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202592\|gb\|KGN57725.1\|	1.3e-63	100.00	hypothetical protein Csa_3G263230 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G263230.1	Csa3G263230.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G263230	CSPI03G20440	Wild cucumber (PI 183967)	cpicuB120
Csa3G263230	CsGy3G020160	Cucumber (Gy14) v2	cgybcuB109

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G263230	Cucurbita maxima (Rimu)	cmacuB242
Csa3G263230	Cucurbita maxima (Rimu)	cmacuB455
Csa3G263230	Cucurbita moschata (Rifu)	cmocuB229
Csa3G263230	Cucurbita moschata (Rifu)	cmocuB442
Csa3G263230	Melon (DHL92) v3.5.1	cumeB161
Csa3G263230	Watermelon (Charleston Gray)	cuwcgB233
Csa3G263230	Watermelon (97103) v1	cuwmB247
Csa3G263230	Cucurbita pepo (Zucchini)	cpecuB547
Csa3G263230	Cucurbita pepo (Zucchini)	cpecuB600
Csa3G263230	Bottle gourd (USVL1VR-Ls)	culsiB212
Csa3G263230	Melon (DHL92) v3.6.1	cumedB228
Csa3G263230	Silver-seed gourd	carcuB0513
Csa3G263230	Silver-seed gourd	carcuB0780
Csa3G263230	Watermelon (97103) v2	cuwmbB218
Csa3G263230	Wax gourd	cuwgoB271
Csa3G263230	Cucumber (Gy14) v1	cgycuB003