CSPI03G20440 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G20440
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr3 : 16324735 .. 16325010 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGACGAAGTCCTTTGTTGCCTGGCCATTTACCACAATCCCTCATCGTCAACATAGATTTTGAGCGTCCTCACCTAAATGTTCCAGTAATTACCCTATCTGAAGGTGATGTTGCAACAGAGGATGTCCAAGATTATGGAACGCTGCATGATACTGCACCCCATGATGAGACTTTGCCAGACTCGAGAACTTCATTGATCGTTTATGACCCACTCTTCTACAACATACTTATCAGAGAAGACACAGGTGAGATGAGCTCAACAAGAACAACTTAA

mRNA sequence

ATGCGACGAAGTCCTTTGTTGCCTGGCCATTTACCACAATCCCTCATCGTCAACATAGATTTTGAGCGTCCTCACCTAAATGTTCCAGTAATTACCCTATCTGAAGGTGATGTTGCAACAGAGGATGTCCAAGATTATGGAACGCTGCATGATACTGCACCCCATGATGAGACTTTGCCAGACTCGAGAACTTCATTGATCGTTTATGACCCACTCTTCTACAACATACTTATCAGAGAAGACACAGGTGAGATGAGCTCAACAAGAACAACTTAA

Coding sequence (CDS)

ATGCGACGAAGTCCTTTGTTGCCTGGCCATTTACCACAATCCCTCATCGTCAACATAGATTTTGAGCGTCCTCACCTAAATGTTCCAGTAATTACCCTATCTGAAGGTGATGTTGCAACAGAGGATGTCCAAGATTATGGAACGCTGCATGATACTGCACCCCATGATGAGACTTTGCCAGACTCGAGAACTTCATTGATCGTTTATGACCCACTCTTCTACAACATACTTATCAGAGAAGACACAGGTGAGATGAGCTCAACAAGAACAACTTAA

Homology

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BLAST of CSPI03G20440 vs. TrEMBL
Match: A0A0A0L6W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263230 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1   MRRSPLLPGHLPQSLIVNIDFERPHLNVPVITLSEGDVATEDVQDYGTLHDTAPHDETLP 60
           MRRSPLLPGHLPQSLIVNIDFERPHLNVPVITLSEGD ATEDVQDYGTLHDTAPHDETLP
Sbjct: 34  MRRSPLLPGHLPQSLIVNIDFERPHLNVPVITLSEGDAATEDVQDYGTLHDTAPHDETLP 93

Query: 61  DSRTSLIVYDPLFYNILIREDTGEMSSTRTT 92
           DSRTSLIVYDPLFYNIL+REDTGEMSS RTT
Sbjct: 94  DSRTSLIVYDPLFYNILMREDTGEMSSARTT 124

[Close]

BLAST of CSPI03G20440 vs. NCBI nr
Match: gi|700202592|gb|KGN57725.1| (hypothetical protein Csa_3G263230 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1   MRRSPLLPGHLPQSLIVNIDFERPHLNVPVITLSEGDVATEDVQDYGTLHDTAPHDETLP 60
           MRRSPLLPGHLPQSLIVNIDFERPHLNVPVITLSEGD ATEDVQDYGTLHDTAPHDETLP
Sbjct: 34  MRRSPLLPGHLPQSLIVNIDFERPHLNVPVITLSEGDAATEDVQDYGTLHDTAPHDETLP 93

Query: 61  DSRTSLIVYDPLFYNILIREDTGEMSSTRTT 92
           DSRTSLIVYDPLFYNIL+REDTGEMSS RTT
Sbjct: 94  DSRTSLIVYDPLFYNILMREDTGEMSSARTT 124

The following BLAST results are available for this feature:

BLAST of CSPI03G20440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G20440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6W4_CUCSA	1.0e-43	96.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263230 PE=4 SV=1	[more]

BLAST of CSPI03G20440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI03G20440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202592\|gb\|KGN57725.1\|	1.4e-43	96.70	hypothetical protein Csa_3G263230 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20440.1	CSPI03G20440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G20440	Csa3G263230	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G20440	CsaV3_3G020380	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G20440	CsGy3G020160	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G20440	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G20440	Watermelon (Charleston Gray)	cpiwcgB241
CSPI03G20440	Watermelon (97103) v1	cpiwmB246
CSPI03G20440	Cucurbita pepo (Zucchini)	cpecpiB550
CSPI03G20440	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G20440	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G20440	Melon (DHL92) v3.6.1	cpimedB229
CSPI03G20440	Silver-seed gourd	carcpiB0520
CSPI03G20440	Silver-seed gourd	carcpiB0798
CSPI03G20440	Watermelon (97103) v2	cpiwmbB224
CSPI03G20440	Wax gourd	cpiwgoB271
CSPI03G20440	Cucumber (Gy14) v1	cgycpiB003
CSPI03G20440	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G20440	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G20440	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G20440	Cucurbita moschata (Rifu)	cmocpiB446