Csa3G223300 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G223300
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPantothenate synthetase; contains IPR003721 (Pantoate-beta-alanine ligase)
LocationChr3 : 14764470 .. 14764721 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGATGTCGTTTTCCATCCTCACAATCTATACGACTATGGATTGCCCTGGAATGCCCTACGTTTCTTGCTTGGAGGAATCCGATTCAGGGGATGAGACATCGGCGAGGGTTGAACGTGTGGAGAAGGGCATGTGTGGGAGAAGTAGGCCTATTTTCTTTAGAGGTGTACCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTTGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGA

mRNA sequence

ATGGAGTTGATGTCGTTTTCCATCCTCACAATCTATACGACTATGGATTGCCCTGGAATGCCCTACGTTTCTTGCTTGGAGGAATCCGATTCAGGGGATGAGACATCGGCGAGGGTTGAACGTGTGGAGAAGGGCATGTGTGGGAGAAGTAGGCCTATTTTCTTTAGAGGTGTACCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTTGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGA

Coding sequence (CDS)

ATGGAGTTGATGTCGTTTTCCATCCTCACAATCTATACGACTATGGATTGCCCTGGAATGCCCTACGTTTCTTGCTTGGAGGAATCCGATTCAGGGGATGAGACATCGGCGAGGGTTGAACGTGTGGAGAAGGGCATGTGTGGGAGAAGTAGGCCTATTTTCTTTAGAGGTGTACCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTTGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGA

Protein sequence

MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQQ*
Homology
[Close]
BLAST of Csa3G223300 vs. Swiss-Prot
Match: PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.0e-19
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 23  VSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQ 82
           VSC+EE   G ET  RVER+EKG CG+SRP+FFRGV T+VTKLFNIVE DVA+F KKDYQ
Sbjct: 121 VSCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQ 180

Query: 83  Q 84
           Q
Sbjct: 181 Q 181

[Close]
BLAST of Csa3G223300 vs. Swiss-Prot
Match: PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-18
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 1 

Query: 23  VSCLEES-DSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDY 82
           +SCLEE+   G ET  RVER+EKGMCG SRP+FFRGV T+V+KLFNI+E DVAVF KKDY
Sbjct: 123 ISCLEEAAGDGHETWVRVERLEKGMCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDY 182

Query: 83  QQ 84
           QQ
Sbjct: 183 QQ 184

[Close]
BLAST of Csa3G223300 vs. Swiss-Prot
Match: PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-17
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 

Query: 16  DCPGMPYVSCLEE-SDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVA 75
           +C G   VSC++  S  G ET  R E++EK +CG+SRP+FFRGV T+VTKLFNIVE DVA
Sbjct: 113 ECGGDGVVSCVDRRSGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVA 172

Query: 76  VFEKKDYQQ 84
           VF KKDYQQ
Sbjct: 173 VFGKKDYQQ 181

[Close]
BLAST of Csa3G223300 vs. Swiss-Prot
Match: PANC_PSEMY (Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) GN=panC PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 

Query: 32  GDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQQ 84
           GD+T   V  V +G+CG SRP  F GV TVVTKLFN+V+ D+AVF +KDYQQ
Sbjct: 104 GDQTRVTVPGVSEGLCGASRPGHFEGVATVVTKLFNMVQPDLAVFGEKDYQQ 155

[Close]
BLAST of Csa3G223300 vs. Swiss-Prot
Match: PANC_SYNFM (Pantothenate synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=panC PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-10
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 

Query: 32  GDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQQ 84
           G +T   V +V   +CGRSRP+FFRGV TVV KLF+IV+  VAVF +KDYQQ
Sbjct: 102 GYQTYVEVTKVTAPLCGRSRPLFFRGVATVVVKLFHIVKPHVAVFGEKDYQQ 153

[Close]
BLAST of Csa3G223300 vs. TrEMBL
Match: A0A0A0L9F0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223300 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.0e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT 60
          MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT
Sbjct: 1  MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT 60

Query: 61 VVTKLFNIVELDVAVFEKKDYQQ 84
          VVTKLFNIVELDVAVFEKKDYQQ
Sbjct: 61 VVTKLFNIVELDVAVFEKKDYQQ 83

[Close]
BLAST of Csa3G223300 vs. TrEMBL
Match: A0A0A0LBL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G625640 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-23
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 11  IYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVE 70
           + + MDC GMP VSCLEES SG ET  RVER+EKGMCGRSRP+FFRGV TVV KLFNIV+
Sbjct: 282 VESAMDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 341

Query: 71  LDVAVFEKKDYQQ 84
            DVAVF KKDYQQ
Sbjct: 342 PDVAVFGKKDYQQ 354

[Close]
BLAST of Csa3G223300 vs. TrEMBL
Match: A0A0A0KJD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409330 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-22
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 11  IYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVE 70
           + + MDC GM  VSCLEES SG ET  RVER+EKGMCGRSRP+FFRGV TVV KLFNIV+
Sbjct: 107 VESAMDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 166

Query: 71  LDVAVFEKKDYQQ 84
            DVA+F KKDYQQ
Sbjct: 167 PDVALFGKKDYQQ 179

[Close]
BLAST of Csa3G223300 vs. TrEMBL
Match: A0A061DVC0_THECC (Pantoate-beta-alanine ligase, putative isoform 2 OS=Theobroma cacao GN=TCM_002982 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-18
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 23  VSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQ 82
           VSC+EE  SG ET  R+ER+EKG+CG+SRP+FFRGV T+VTKLFNIVE DVAVF KKDYQ
Sbjct: 130 VSCVEEKGSGHETWVRIERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQ 189

Query: 83  Q 84
           Q
Sbjct: 190 Q 190

[Close]
BLAST of Csa3G223300 vs. TrEMBL
Match: A0A061DPD8_THECC (Pantoate-beta-alanine ligase, putative isoform 1 OS=Theobroma cacao GN=TCM_002982 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-18
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 23  VSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQ 82
           VSC+EE  SG ET  R+ER+EKG+CG+SRP+FFRGV T+VTKLFNIVE DVAVF KKDYQ
Sbjct: 130 VSCVEEKGSGHETWVRIERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQ 189

Query: 83  Q 84
           Q
Sbjct: 190 Q 190

[Close]
BLAST of Csa3G223300 vs. TAIR10
Match: AT5G48840.1 (AT5G48840.1 homolog of bacterial PANC)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-20
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 23  VSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVAVFEKKDYQ 82
           VSC+EE   G ET  RVER+EKG CG+SRP+FFRGV T+VTKLFNIVE DVA+F KKDYQ
Sbjct: 121 VSCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQ 180

Query: 83  Q 84
           Q
Sbjct: 181 Q 181

[Close]
BLAST of Csa3G223300 vs. NCBI nr
Match: gi|700202466|gb|KGN57599.1| (hypothetical protein Csa_3G223300 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT 60
          MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT
Sbjct: 1  MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT 60

Query: 61 VVTKLFNIVELDVAVFEKKDYQQ 84
          VVTKLFNIVELDVAVFEKKDYQQ
Sbjct: 61 VVTKLFNIVELDVAVFEKKDYQQ 83

[Close]
BLAST of Csa3G223300 vs. NCBI nr
Match: gi|778682111|ref|XP_004152022.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 4.4e-23
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 11  IYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVE 70
           + + MDC GMP VSCLEES SG ET  RVER+EKGMCGRSRP+FFRGV TVV KLFNIV+
Sbjct: 129 VESAMDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 188

Query: 71  LDVAVFEKKDYQQ 84
            DVAVF KKDYQQ
Sbjct: 189 PDVAVFGKKDYQQ 201

[Close]
BLAST of Csa3G223300 vs. NCBI nr
Match: gi|700203216|gb|KGN58349.1| (hypothetical protein Csa_3G625640 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 4.4e-23
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 11  IYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVE 70
           + + MDC GMP VSCLEES SG ET  RVER+EKGMCGRSRP+FFRGV TVV KLFNIV+
Sbjct: 282 VESAMDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 341

Query: 71  LDVAVFEKKDYQQ 84
            DVAVF KKDYQQ
Sbjct: 342 PDVAVFGKKDYQQ 354

[Close]
BLAST of Csa3G223300 vs. NCBI nr
Match: gi|778716155|ref|XP_004140085.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-22
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 11  IYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVE 70
           + + MDC GM  VSCLEES SG ET  RVER+EKGMCGRSRP+FFRGV TVV KLFNIV+
Sbjct: 107 VESAMDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 166

Query: 71  LDVAVFEKKDYQQ 84
            DVA+F KKDYQQ
Sbjct: 167 PDVALFGKKDYQQ 179

[Close]
BLAST of Csa3G223300 vs. NCBI nr
Match: gi|700192672|gb|KGN47876.1| (hypothetical protein Csa_6G409330 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-22
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 11  IYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVE 70
           + + MDC GM  VSCLEES SG ET  RVER+EKGMCGRSRP+FFRGV TVV KLFNIV+
Sbjct: 107 VESAMDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 166

Query: 71  LDVAVFEKKDYQQ 84
            DVA+F KKDYQQ
Sbjct: 167 PDVALFGKKDYQQ 179

The following BLAST results are available for this feature:
BLAST of Csa3G223300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PANC_ARATH5.0e-1973.77Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1[more]
PANC_ORYSJ2.5e-1872.58Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2[more]
PANC_LOTJA3.6e-1763.77Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3[more]
PANC_PSEMY1.1e-1061.54Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) GN=panC PE=3 SV=1[more]
PANC_SYNFM3.2e-1061.54Pantothenate synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB... [more]
BLAST of Csa3G223300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9F0_CUCSA1.0e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223300 PE=4 SV=1[more]
A0A0A0LBL8_CUCSA3.0e-2376.71Uncharacterized protein OS=Cucumis sativus GN=Csa_3G625640 PE=3 SV=1[more]
A0A0A0KJD2_CUCSA4.4e-2273.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409330 PE=4 SV=1[more]
A0A061DVC0_THECC2.9e-1875.41Pantoate-beta-alanine ligase, putative isoform 2 OS=Theobroma cacao GN=TCM_00298... [more]
A0A061DPD8_THECC2.9e-1875.41Pantoate-beta-alanine ligase, putative isoform 1 OS=Theobroma cacao GN=TCM_00298... [more]
BLAST of Csa3G223300 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48840.12.8e-2073.77 homolog of bacterial PANC[more]
BLAST of Csa3G223300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202466|gb|KGN57599.1|1.5e-39100.00hypothetical protein Csa_3G223300 [Cucumis sativus][more]
gi|778682111|ref|XP_004152022.2|4.4e-2376.71PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus][more]
gi|700203216|gb|KGN58349.1|4.4e-2376.71hypothetical protein Csa_3G625640 [Cucumis sativus][more]
gi|778716155|ref|XP_004140085.2|6.3e-2273.97PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sati... [more]
gi|700192672|gb|KGN47876.1|6.3e-2273.97hypothetical protein Csa_6G409330 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003721Pantoate_ligase
IPR014729Rossmann-like_a/b/a_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0015940pantothenate biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0015940 pantothenate biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0004592 pantoate-beta-alanine ligase activity
molecular_function GO:0042803 protein homodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G223300.1Csa3G223300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003721Pantoate-beta-alanine ligasePANTHERPTHR21299:SF1PANTOATE--BETA-ALANINE LIGASEcoord: 31..83
score: 1.5
IPR003721Pantoate-beta-alanine ligasePFAMPF02569Pantoate_ligasecoord: 35..83
score: 3.2
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 31..83
score: 1.6
NoneNo IPR availablePANTHERPTHR21299CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASEcoord: 31..83
score: 1.5
NoneNo IPR availableunknownSSF52374Nucleotidylyl transferasecoord: 33..83
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G223300CSPI03G19100Wild cucumber (PI 183967)cpicuB120
Csa3G223300CsGy3G019000Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G223300Silver-seed gourdcarcuB0043
Csa3G223300Silver-seed gourdcarcuB0675
Csa3G223300Watermelon (97103) v2cuwmbB215
Csa3G223300Wax gourdcuwgoB283
Csa3G223300Cucumber (Gy14) v1cgycuB003
Csa3G223300Cucurbita maxima (Rimu)cmacuB320
Csa3G223300Cucurbita maxima (Rimu)cmacuB697
Csa3G223300Cucurbita moschata (Rifu)cmocuB307
Csa3G223300Cucurbita moschata (Rifu)cmocuB687
Csa3G223300Melon (DHL92) v3.5.1cumeB166
Csa3G223300Watermelon (Charleston Gray)cuwcgB230
Csa3G223300Watermelon (97103) v1cuwmB243
Csa3G223300Cucurbita pepo (Zucchini)cpecuB205
Csa3G223300Cucurbita pepo (Zucchini)cpecuB389
Csa3G223300Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G223300Melon (DHL92) v3.6.1cumedB238