CSPI03G19100 (gene) Wild cucumber (PI 183967)

NameCSPI03G19100
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPantothenate synthetase
LocationChr3 : 14849098 .. 14849730 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAACTAGGCTAAGAGGGCAATCAGCTCGATTTATGGAATTCTTTCTCCTTCTCCTTCTCCCTCCATTTCCTCACTTCCCTAATTTTATTTTTCATTTTTCTCTCATCTCTCCCTCTCCTATTCCATTTTCCCTCATTTTCACAAAACCTTTGATTTCCCTTTTTTTCCTTTCCCATTTTTCATTCAAACTACGAAAGCACTGGTAGTTCCAGTGATTTCACTGTGGAACATGACTCACTCAAGTCCCAAGACATGATCTTGCAGTGAAAATTAGATTTCGGTGAGGAGGTATATGGAGTTAAATCAACTATGGAGTTGATGTCGTTTTCCATCCTCACAATCTATACGACTATGGATTGCCCTGGAATGCCCAACTTTTCTTGCTTGGAGGAATCTGGTTCAGGGGATGAGACATCGACGAGGGTTGAACGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCATATTTTCTTTAGAGGTGTTACTACGATTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGGCTGGATTATCAGGTGGATGGCGAGTCTTTGTAAGAATGTGAATGATTTTGATTTTCATATTTGTTTTGAG

mRNA sequence

ATGGAGTTGATGTCGTTTTCCATCCTCACAATCTATACGACTATGGATTGCCCTGGAATGCCCAACTTTTCTTGCTTGGAGGAATCTGGTTCAGGGGATGAGACATCGACGAGGGTTGAACGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCATATTTTCTTTAGAGGTGTTACTACGATTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGGCTGGATTATCAGGTGGATGGCGAGTCTTTGTAA

Coding sequence (CDS)

ATGGAGTTGATGTCGTTTTCCATCCTCACAATCTATACGACTATGGATTGCCCTGGAATGCCCAACTTTTCTTGCTTGGAGGAATCTGGTTCAGGGGATGAGACATCGACGAGGGTTGAACGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCATATTTTCTTTAGAGGTGTTACTACGATTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGGCTGGATTATCAGGTGGATGGCGAGTCTTTGTAA
BLAST of CSPI03G19100 vs. Swiss-Prot
Match: PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-20
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1

Query: 24  SCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQ 83
           SC+EE G G ET  RVERLEKG CG+SR +FFRGV TIVTKLFNIVE DVA+F KKDYQQ
Sbjct: 122 SCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQ 181

Query: 84  W 85
           W
Sbjct: 182 W 182

BLAST of CSPI03G19100 vs. Swiss-Prot
Match: PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-19
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1

Query: 24  SCLEES-GSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQ 83
           SCLEE+ G G ET  RVERLEKGMCG SR +FFRGV TIV+KLFNI+E DVAVF KKDYQ
Sbjct: 124 SCLEEAAGDGHETWVRVERLEKGMCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDYQ 183

Query: 84  QW 85
           QW
Sbjct: 184 QW 185

BLAST of CSPI03G19100 vs. Swiss-Prot
Match: PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3)

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-18
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 16  DCPGMPNFSCLEE-SGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 75
           +C G    SC++  SG G ET  R E+LEK +CG+SR +FFRGV TIVTKLFNIVE DVA
Sbjct: 113 ECGGDGVVSCVDRRSGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVA 172

Query: 76  VFEKKDYQQW 85
           VF KKDYQQW
Sbjct: 173 VFGKKDYQQW 182

BLAST of CSPI03G19100 vs. Swiss-Prot
Match: PANC_PSEMY (Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) GN=panC PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-10
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1

Query: 21  PNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKD 80
           P+ + +   G GD+T   V  + +G+CG SR   F GV T+VTKLFN+V+ D+AVF +KD
Sbjct: 93  PDAAEMYPHGMGDQTRVTVPGVSEGLCGASRPGHFEGVATVVTKLFNMVQPDLAVFGEKD 152

Query: 81  YQQ 84
           YQQ
Sbjct: 153 YQQ 155

BLAST of CSPI03G19100 vs. Swiss-Prot
Match: PANC_PELCD (Pantothenate synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=panC PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-09
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1

Query: 31  SGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQ 84
           +G +T   VE L K +CG SR   FRGVTT+V KLFNIV+ D+A+F +KD+QQ
Sbjct: 101 NGYKTYVHVEGLTKTLCGESRPGHFRGVTTVVCKLFNIVQPDIALFGRKDFQQ 153

BLAST of CSPI03G19100 vs. TrEMBL
Match: A0A0A0L9F0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223300 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-34
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 1

Query: 1  MELMSFSILTIYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTT 60
          MELMSFSILTIYTTMDCPGMP  SCLEES SGDETS RVER+EKGMCGRSR IFFRGV T
Sbjct: 1  MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT 60

Query: 61 IVTKLFNIVELDVAVFEKKDYQQ 84
          +VTKLFNIVELDVAVFEKKDYQQ
Sbjct: 61 VVTKLFNIVELDVAVFEKKDYQQ 83

BLAST of CSPI03G19100 vs. TrEMBL
Match: A0A0A0K7A9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G061730 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-25
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = 1

Query: 1  MELMSFSILTIYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTT 60
          MEL  F ILTI  TM+   +       +SGS DETS RV+RLEK MC RSR +FFRGV T
Sbjct: 1  MELTLFFILTISMTMELNQL-----WIDSGSEDETSVRVKRLEKDMCWRSRLVFFRGVAT 60

Query: 61 IVTKLFNIVELDVAVFEKKDYQQWLDYQVDGESL 95
          +VTKLFNIVELDVAVFEKKDYQQWLDYQ DGESL
Sbjct: 61 VVTKLFNIVELDVAVFEKKDYQQWLDYQADGESL 89

BLAST of CSPI03G19100 vs. TrEMBL
Match: A0A0A0LBL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G625640 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-24
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 11  IYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVE 70
           + + MDC GMP+ SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+
Sbjct: 282 VESAMDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 341

Query: 71  LDVAVFEKKDYQQW 85
            DVAVF KKDYQQW
Sbjct: 342 PDVAVFGKKDYQQW 355

BLAST of CSPI03G19100 vs. TrEMBL
Match: A0A0A0KJD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409330 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.9e-24
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 1

Query: 11  IYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVE 70
           + + MDC GM N SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+
Sbjct: 107 VESAMDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 166

Query: 71  LDVAVFEKKDYQQW 85
            DVA+F KKDYQQW
Sbjct: 167 PDVALFGKKDYQQW 180

BLAST of CSPI03G19100 vs. TrEMBL
Match: A0A061DPD8_THECC (Pantoate-beta-alanine ligase, putative isoform 1 OS=Theobroma cacao GN=TCM_002982 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-19
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1

Query: 24  SCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQ 83
           SC+EE GSG ET  R+ERLEKG+CG+SR +FFRGV TIVTKLFNIVE DVAVF KKDYQQ
Sbjct: 131 SCVEEKGSGHETWVRIERLEKGLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQ 190

Query: 84  W 85
           W
Sbjct: 191 W 191

BLAST of CSPI03G19100 vs. TAIR10
Match: AT5G48840.1 (AT5G48840.1 homolog of bacterial PANC)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-21
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1

Query: 24  SCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQ 83
           SC+EE G G ET  RVERLEKG CG+SR +FFRGV TIVTKLFNIVE DVA+F KKDYQQ
Sbjct: 122 SCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQ 181

Query: 84  W 85
           W
Sbjct: 182 W 182

BLAST of CSPI03G19100 vs. NCBI nr
Match: gi|700202466|gb|KGN57599.1| (hypothetical protein Csa_3G223300 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-34
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 1

Query: 1  MELMSFSILTIYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTT 60
          MELMSFSILTIYTTMDCPGMP  SCLEES SGDETS RVER+EKGMCGRSR IFFRGV T
Sbjct: 1  MELMSFSILTIYTTMDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPT 60

Query: 61 IVTKLFNIVELDVAVFEKKDYQQ 84
          +VTKLFNIVELDVAVFEKKDYQQ
Sbjct: 61 VVTKLFNIVELDVAVFEKKDYQQ 83

BLAST of CSPI03G19100 vs. NCBI nr
Match: gi|700188473|gb|KGN43706.1| (hypothetical protein Csa_7G061730 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-25
Identity = 66/94 (70.21%), Postives = 72/94 (76.60%), Query Frame = 1

Query: 1  MELMSFSILTIYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTT 60
          MEL  F ILTI  TM+   +       +SGS DETS RV+RLEK MC RSR +FFRGV T
Sbjct: 1  MELTLFFILTISMTMELNQL-----WIDSGSEDETSVRVKRLEKDMCWRSRLVFFRGVAT 60

Query: 61 IVTKLFNIVELDVAVFEKKDYQQWLDYQVDGESL 95
          +VTKLFNIVELDVAVFEKKDYQQWLDYQ DGESL
Sbjct: 61 VVTKLFNIVELDVAVFEKKDYQQWLDYQADGESL 89

BLAST of CSPI03G19100 vs. NCBI nr
Match: gi|778682111|ref|XP_004152022.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 11  IYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVE 70
           + + MDC GMP+ SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+
Sbjct: 129 VESAMDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 188

Query: 71  LDVAVFEKKDYQQW 85
            DVAVF KKDYQQW
Sbjct: 189 PDVAVFGKKDYQQW 202

BLAST of CSPI03G19100 vs. NCBI nr
Match: gi|700203216|gb|KGN58349.1| (hypothetical protein Csa_3G625640 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 11  IYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVE 70
           + + MDC GMP+ SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+
Sbjct: 282 VESAMDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 341

Query: 71  LDVAVFEKKDYQQW 85
            DVAVF KKDYQQW
Sbjct: 342 PDVAVFGKKDYQQW 355

BLAST of CSPI03G19100 vs. NCBI nr
Match: gi|778716155|ref|XP_004140085.2| (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 9.9e-24
Identity = 55/74 (74.32%), Postives = 61/74 (82.43%), Query Frame = 1

Query: 11  IYTTMDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVE 70
           + + MDC GM N SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+
Sbjct: 107 VESAMDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVD 166

Query: 71  LDVAVFEKKDYQQW 85
            DVA+F KKDYQQW
Sbjct: 167 PDVALFGKKDYQQW 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PANC_ARATH3.0e-2077.05Pantoate--beta-alanine ligase OS=Arabidopsis thaliana GN=At5g48840 PE=1 SV=1[more]
PANC_ORYSJ1.1e-1977.42Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica GN=PANC PE=2 SV=2[more]
PANC_LOTJA4.8e-1865.71Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3[more]
PANC_PSEMY4.8e-1049.21Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) GN=panC PE=3 SV=1[more]
PANC_PELCD3.1e-0956.60Pantothenate synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) ... [more]
Match NameE-valueIdentityDescription
A0A0A0L9F0_CUCSA2.5e-3490.36Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223300 PE=4 SV=1[more]
A0A0A0K7A9_CUCSA2.2e-2570.21Uncharacterized protein OS=Cucumis sativus GN=Csa_7G061730 PE=4 SV=1[more]
A0A0A0LBL8_CUCSA1.4e-2475.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G625640 PE=3 SV=1[more]
A0A0A0KJD2_CUCSA6.9e-2474.32Uncharacterized protein OS=Cucumis sativus GN=Csa_6G409330 PE=4 SV=1[more]
A0A061DPD8_THECC1.8e-1978.69Pantoate-beta-alanine ligase, putative isoform 1 OS=Theobroma cacao GN=TCM_00298... [more]
Match NameE-valueIdentityDescription
AT5G48840.11.7e-2177.05 homolog of bacterial PANC[more]
Match NameE-valueIdentityDescription
gi|700202466|gb|KGN57599.1|3.6e-3490.36hypothetical protein Csa_3G223300 [Cucumis sativus][more]
gi|700188473|gb|KGN43706.1|3.1e-2570.21hypothetical protein Csa_7G061730 [Cucumis sativus][more]
gi|778682111|ref|XP_004152022.2|2.0e-2475.68PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus][more]
gi|700203216|gb|KGN58349.1|2.0e-2475.68hypothetical protein Csa_3G625640 [Cucumis sativus][more]
gi|778716155|ref|XP_004140085.2|9.9e-2474.32PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sati... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003721Pantoate_ligase
IPR014729Rossmann-like_a/b/a_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0015940pantothenate biosynthetic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0015940 pantothenate biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0004592 pantoate-beta-alanine ligase activity
molecular_function GO:0042803 protein homodimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G19100.1CSPI03G19100.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003721Pantoate-beta-alanine ligasePANTHERPTHR21299:SF1PANTOATE--BETA-ALANINE LIGASEcoord: 30..85
score: 1.5
IPR003721Pantoate-beta-alanine ligasePFAMPF02569Pantoate_ligasecoord: 35..84
score: 1.9
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 32..85
score: 6.4
NoneNo IPR availablePANTHERPTHR21299CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASEcoord: 30..85
score: 1.5
NoneNo IPR availableunknownSSF52374Nucleotidylyl transferasecoord: 33..85
score: 9.79

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G19100Csa3G223300Cucumber (Chinese Long) v2cpicuB120
CSPI03G19100CsGy3G019000Cucumber (Gy14) v2cgybcpiB110
The following gene(s) are paralogous to this gene:

None