CsGy3G019000 (gene) Cucumber (Gy14) v2

NameCsGy3G019000
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPantothenate synthetase
LocationChr3 : 15226440 .. 15227029 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGCCCTGGAATGCCCAACTTTTCTTGCTTGGAGGAATCCGGTTCAGGGGATGAGACATCGACGAGGGTTGAACGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCATATTTTCTTTAGAGGTGTTACTACGATTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGGCTGGATTATCAGGTGGATGGCGAGTCTTTGTAAGAATGTGAATGATTTTGATTTTCATATTTGTTTTGAGCTTAAAATTCATTGTTTTTCATCTGAATTCCTAACTTGATAATTCAATTCTATTATTTATGAACTTAATTTGCATTACTCTAGTCAGAGAGCACTAAATCTTCCATGTTTGCAAAACTATCATCTAAACTTGAAAAACTTCTTTCATCAATACCATTAGATGAACGGGTATTTGAGTCTCAAGAATACTAAATATTTCAGGTGTACAATATGCCCTGCAGGAGATAGCTTTAACTCCTGTTCCTTCAACTTCATTTAGTTCTGTTCTAAATGGTTTAAATTTTGGGTTGGGCAACAAGCTTCTTGGATGA

mRNA sequence

ATGGATTGCCCTGGAATGCCCAACTTTTCTTGCTTGGAGGAATCCGGTTCAGGGGATGAGACATCGACGAGGGTTGAACGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCATATTTTCTTTAGAGGTGTTACTACGATTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGGCTGGATTATCAGGAGATAGCTTTAACTCCTGTTCCTTCAACTTCATTTAGTTCTGTTCTAAATGGTTTAAATTTTGGGTTGGGCAACAAGCTTCTTGGATGA

Coding sequence (CDS)

ATGGATTGCCCTGGAATGCCCAACTTTTCTTGCTTGGAGGAATCCGGTTCAGGGGATGAGACATCGACGAGGGTTGAACGTTTGGAGAAGGGCATGTGTGGGAGAAGTAGGCATATTTTCTTTAGAGGTGTTACTACGATTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGAGAAGAAGGATTATCAACAATGGCTGGATTATCAGGAGATAGCTTTAACTCCTGTTCCTTCAACTTCATTTAGTTCTGTTCTAAATGGTTTAAATTTTGGGTTGGGCAACAAGCTTCTTGGATGA

Protein sequence

MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQWLDYQEIALTPVPSTSFSSVLNGLNFGLGNKLLG
BLAST of CsGy3G019000 vs. NCBI nr
Match: KGN57599.1 (hypothetical protein Csa_3G223300 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 3.5e-26
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1  MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
          MDCPGMP  SCLEES SGDETS RVER+EKGMCGRSR IFFRGV T+VTKLFNIVELDVA
Sbjct: 15 MDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVA 74

Query: 61 VFEKKDYQQ 70
          VFEKKDYQQ
Sbjct: 75 VFEKKDYQQ 83

BLAST of CsGy3G019000 vs. NCBI nr
Match: KGN58349.1 (hypothetical protein Csa_3G625640 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-24
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
           MDC GMP+ SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+ DVA
Sbjct: 286 MDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA 345

Query: 61  VFEKKDYQQW 71
           VF KKDYQQW
Sbjct: 346 VFGKKDYQQW 355

BLAST of CsGy3G019000 vs. NCBI nr
Match: XP_004152022.2 (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-24
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
           MDC GMP+ SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+ DVA
Sbjct: 133 MDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA 192

Query: 61  VFEKKDYQQW 71
           VF KKDYQQW
Sbjct: 193 VFGKKDYQQW 202

BLAST of CsGy3G019000 vs. NCBI nr
Match: KGN47876.1 (hypothetical protein Csa_6G409330 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-23
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1   MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
           MDC GM N SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+ DVA
Sbjct: 111 MDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA 170

Query: 61  VFEKKDYQQW 71
           +F KKDYQQW
Sbjct: 171 LFGKKDYQQW 180

BLAST of CsGy3G019000 vs. NCBI nr
Match: XP_004140085.2 (PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.6e-23
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1   MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
           MDC GM N SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+ DVA
Sbjct: 111 MDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA 170

Query: 61  VFEKKDYQQW 71
           +F KKDYQQW
Sbjct: 171 LFGKKDYQQW 180

BLAST of CsGy3G019000 vs. TAIR10
Match: AT5G48840.1 (homolog of bacterial PANC)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-21
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 10  SCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQ 69
           SC+EE G G ET  RVERLEKG CG+SR +FFRGV TIVTKLFNIVE DVA+F KKDYQQ
Sbjct: 122 SCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQ 181

Query: 70  W 71
           W
Sbjct: 182 W 182

BLAST of CsGy3G019000 vs. Swiss-Prot
Match: sp|Q9FKB3|PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-20
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 10  SCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQ 69
           SC+EE G G ET  RVERLEKG CG+SR +FFRGV TIVTKLFNIVE DVA+F KKDYQQ
Sbjct: 122 SCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQ 181

Query: 70  W 71
           W
Sbjct: 182 W 182

BLAST of CsGy3G019000 vs. Swiss-Prot
Match: sp|O24210|PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 10  SCLEE-SGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQ 69
           SCLEE +G G ET  RVERLEKGMCG SR +FFRGV TIV+KLFNI+E DVAVF KKDYQ
Sbjct: 124 SCLEEAAGDGHETWVRVERLEKGMCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDYQ 183

Query: 70  QW 71
           QW
Sbjct: 184 QW 185

BLAST of CsGy3G019000 vs. Swiss-Prot
Match: sp|O24035|PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 6.9e-18
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 2   DCPGMPNFSCLE-ESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 61
           +C G    SC++  SG G ET  R E+LEK +CG+SR +FFRGV TIVTKLFNIVE DVA
Sbjct: 113 ECGGDGVVSCVDRRSGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVA 172

Query: 62  VFEKKDYQQW 71
           VF KKDYQQW
Sbjct: 173 VFGKKDYQQW 182

BLAST of CsGy3G019000 vs. Swiss-Prot
Match: sp|A4XYC5|PANC_PSEMY (Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=panC PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.3e-10
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 7   PNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKD 66
           P+ + +   G GD+T   V  + +G+CG SR   F GV T+VTKLFN+V+ D+AVF +KD
Sbjct: 93  PDAAEMYPHGMGDQTRVTVPGVSEGLCGASRPGHFEGVATVVTKLFNMVQPDLAVFGEKD 152

Query: 67  YQQ 70
           YQQ
Sbjct: 153 YQQ 155

BLAST of CsGy3G019000 vs. Swiss-Prot
Match: sp|Q3A3I7|PANC_PELCD (Pantothenate synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=panC PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-09
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 0

Query: 17  SGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQ 70
           +G +T   VE L K +CG SR   FRGVTT+V KLFNIV+ D+A+F +KD+QQ
Sbjct: 101 NGYKTYVHVEGLTKTLCGESRPGHFRGVTTVVCKLFNIVQPDIALFGRKDFQQ 153

BLAST of CsGy3G019000 vs. TrEMBL
Match: tr|A0A0A0L9F0|A0A0A0L9F0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G223300 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-26
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 1  MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
          MDCPGMP  SCLEES SGDETS RVER+EKGMCGRSR IFFRGV T+VTKLFNIVELDVA
Sbjct: 15 MDCPGMPYVSCLEESDSGDETSARVERVEKGMCGRSRPIFFRGVPTVVTKLFNIVELDVA 74

Query: 61 VFEKKDYQQ 70
          VFEKKDYQQ
Sbjct: 75 VFEKKDYQQ 83

BLAST of CsGy3G019000 vs. TrEMBL
Match: tr|A0A0A0LBL8|A0A0A0LBL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625640 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.8e-24
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
           MDC GMP+ SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+ DVA
Sbjct: 286 MDCAGMPDVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA 345

Query: 61  VFEKKDYQQW 71
           VF KKDYQQW
Sbjct: 346 VFGKKDYQQW 355

BLAST of CsGy3G019000 vs. TrEMBL
Match: tr|A0A0A0KJD2|A0A0A0KJD2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409330 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1   MDCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVA 60
           MDC GM N SCLEESGSG ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+ DVA
Sbjct: 111 MDCAGMANVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVA 170

Query: 61  VFEKKDYQQW 71
           +F KKDYQQW
Sbjct: 171 LFGKKDYQQW 180

BLAST of CsGy3G019000 vs. TrEMBL
Match: tr|A0A1S3CMZ3|A0A1S3CMZ3_CUCME (pantoate--beta-alanine ligase OS=Cucumis melo OX=3656 GN=LOC103502785 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0

Query: 2   DCPGMPNFSCLEESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAV 61
           DC GM + SCLEESGS  ET  RVERLEKGMCGRSR +FFRGV T+V KLFNIV+ DVA+
Sbjct: 115 DCAGMADVSCLEESGSSHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVAL 174

Query: 62  FEKKDYQQW 71
           F KKDYQQW
Sbjct: 175 FGKKDYQQW 183

BLAST of CsGy3G019000 vs. TrEMBL
Match: tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-20
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 14 ESGSGDETSTRVERLEKGMCGRSRHIFFRGVTTIVTKLFNIVELDVAVFEKKDYQQWLDY 73
          +SGS DETS RV+RLEK MC RSR +FFRGV T+VTKLFNIVELDVAVFEKKDYQQWLDY
Sbjct: 23 DSGSEDETSVRVKRLEKDMCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDY 82

Query: 74 Q 75
          Q
Sbjct: 83 Q 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57599.13.5e-2688.41hypothetical protein Csa_3G223300 [Cucumis sativus][more]
KGN58349.17.2e-2480.00hypothetical protein Csa_3G625640 [Cucumis sativus][more]
XP_004152022.27.2e-2480.00PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase [Cucumis sativus][more]
KGN47876.13.6e-2378.57hypothetical protein Csa_6G409330 [Cucumis sativus][more]
XP_004140085.23.6e-2378.57PREDICTED: LOW QUALITY PROTEIN: pantoate--beta-alanine ligase-like [Cucumis sati... [more]
Match NameE-valueIdentityDescription
AT5G48840.12.4e-2177.05homolog of bacterial PANC[more]
Match NameE-valueIdentityDescription
sp|Q9FKB3|PANC_ARATH4.3e-2077.05Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 ... [more]
sp|O24210|PANC_ORYSJ1.6e-1977.42Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC P... [more]
sp|O24035|PANC_LOTJA6.9e-1865.71Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3[more]
sp|A4XYC5|PANC_PSEMY5.3e-1049.21Pantothenate synthetase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=panC ... [more]
sp|Q3A3I7|PANC_PELCD4.5e-0956.60Pantothenate synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 10364... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0L9F0|A0A0A0L9F0_CUCSA2.3e-2688.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G223300 PE=4 SV=1[more]
tr|A0A0A0LBL8|A0A0A0LBL8_CUCSA4.8e-2480.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625640 PE=3 SV=1[more]
tr|A0A0A0KJD2|A0A0A0KJD2_CUCSA2.4e-2378.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409330 PE=4 SV=1[more]
tr|A0A1S3CMZ3|A0A1S3CMZ3_CUCME2.2e-2175.36pantoate--beta-alanine ligase OS=Cucumis melo OX=3656 GN=LOC103502785 PE=3 SV=1[more]
tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA3.2e-2083.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015940pantothenate biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR003721Pantoate_ligase
IPR014729Rossmann-like_a/b/a_fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015940 pantothenate biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004592 pantoate-beta-alanine ligase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019000.1CsGy3G019000.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 6..79
e-value: 5.5E-17
score: 63.6
IPR003721Pantoate-beta-alanine ligasePFAMPF02569Pantoate_ligasecoord: 21..71
e-value: 3.2E-15
score: 56.0
IPR003721Pantoate-beta-alanine ligasePANTHERPTHR21299:SF1PANTOATE--BETA-ALANINE LIGASEcoord: 16..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR21299CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASEcoord: 16..71
NoneNo IPR availableSUPERFAMILYSSF52374Nucleotidylyl transferasecoord: 19..71

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G019000Csa3G223300Cucumber (Chinese Long) v2cgybcuB109
CsGy3G019000CSPI03G19100Wild cucumber (PI 183967)cgybcpiB110
The following gene(s) are paralogous to this gene:

None