Csa3G187290 (gene) Cucumber (Chinese Long) v2

NameCsa3G187290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description40S ribosomal protein S16; contains IPR000754 (Ribosomal protein S9), IPR020568 (Ribosomal protein S5 domain 2-type fold)
LocationChr3 : 13206321 .. 13206659 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGGCTAGGAAAAGACGACATTGGTAGTCACCTACTACAAGCACGGTAGAGGTTTGATTAAGATCAATGGCCTCCCAATTGAACTTGTAGACCCGAAGATCCTCCATTCAAGGCTTATGAGCCTATCCTCCTCCTTGGATGACACAGGTTCTCTGGTGTCGATATGCGTATCAGAGTAAAGGGTGGTCACACCTTGCAGATTTACGCCATCCGCCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGACCAAGAAGAAAATCGAAGACATTCTTGTCAGGTTCGACAGGACTTTACTCGTCGTCGATCCCTGA

mRNA sequence

ATGTTTTGGCTAGGAAAAGACGACATTGGTAGTCACCTACTACAAGCACGGTTCTCTGGTGTCGATATGCGTATCAGAGTAAAGGGTGGTCACACCTTGCAGATTTACGCCATCCGCCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGACCAAGAAGAAAATCGAAGACATTCTTGTCAGGTTCGACAGGACTTTACTCGTCGTCGATCCCTGA

Coding sequence (CDS)

ATGTTTTGGCTAGGAAAAGACGACATTGGTAGTCACCTACTACAAGCACGGTTCTCTGGTGTCGATATGCGTATCAGAGTAAAGGGTGGTCACACCTTGCAGATTTACGCCATCCGCCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGACCAAGAAGAAAATCGAAGACATTCTTGTCAGGTTCGACAGGACTTTACTCGTCGTCGATCCCTGA

Protein sequence

MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLVVDP*
BLAST of Csa3G187290 vs. Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-23
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 15  QARFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTL 74
           ++RF+GVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTL
Sbjct: 59  KSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL 118

Query: 75  LVVDP 79
           LV DP
Sbjct: 119 LVADP 123

BLAST of Csa3G187290 vs. Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.5e-22
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILV +DRTLLV
Sbjct: 61  RFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLV 120

Query: 77  VDP 79
            DP
Sbjct: 121 ADP 123

BLAST of Csa3G187290 vs. Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-21
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1

Query: 9   IGSHLLQARFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV GG HT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

BLAST of Csa3G187290 vs. Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-21
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1

Query: 9   IGSHLLQARFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV GG HT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

BLAST of Csa3G187290 vs. Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.5e-21
Identity = 49/65 (75.38%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 15  QARFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTL 74
           +++F+GVDMRIRVKGG +T QIYAIRQSIAKALVA++QKYVDEQ+KK+I+D+L+R+DRTL
Sbjct: 56  RSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTL 115

Query: 75  LVVDP 79
           LV DP
Sbjct: 116 LVADP 120

BLAST of Csa3G187290 vs. TrEMBL
Match: A0A0A0L661_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187290 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 8.6e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60
          MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK
Sbjct: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60

Query: 61 KIEDILVRFDRTLLVVDP 79
          KIEDILVRFDRTLLVVDP
Sbjct: 61 KIEDILVRFDRTLLVVDP 78

BLAST of Csa3G187290 vs. TrEMBL
Match: A0A0V0H547_SOLCH (Putative ovule protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-21
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQTKK+I+DIL+R+DRTLLV
Sbjct: 63  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILIRYDRTLLV 122

Query: 77  VDP 79
            DP
Sbjct: 123 ADP 125

BLAST of Csa3G187290 vs. TrEMBL
Match: M0ZY89_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004124 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-21
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQTKK+I+DIL+R+DRTLLV
Sbjct: 63  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILIRYDRTLLV 122

Query: 77  VDP 79
            DP
Sbjct: 123 ADP 125

BLAST of Csa3G187290 vs. TrEMBL
Match: A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RFSGVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTLLV
Sbjct: 60  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 119

Query: 77  VDP 79
            DP
Sbjct: 120 ADP 122

BLAST of Csa3G187290 vs. TrEMBL
Match: K4BW97_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-21
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQTKK+I+DIL+R+DRTLLV
Sbjct: 63  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILIRYDRTLLV 122

Query: 77  VDP 79
            DP
Sbjct: 123 ADP 125

BLAST of Csa3G187290 vs. TAIR10
Match: AT2G09990.1 (AT2G09990.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 9.7e-23
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1

Query: 9   IGSHLLQARFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV GG HT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

BLAST of Csa3G187290 vs. TAIR10
Match: AT5G18380.1 (AT5G18380.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 102.8 bits (255), Expect = 9.7e-23
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = 1

Query: 9   IGSHLLQARFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV GG HT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

BLAST of Csa3G187290 vs. TAIR10
Match: AT3G04230.1 (AT3G04230.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-21
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1

Query: 9   IGSHLLQARFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GVDMRIR  GG +T ++YAIRQSIAKALVA+YQKYVDEQ+KK+I+DIL+
Sbjct: 58  LGKH----RFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILM 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

BLAST of Csa3G187290 vs. NCBI nr
Match: gi|700202322|gb|KGN57455.1| (hypothetical protein Csa_3G187290 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60
          MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK
Sbjct: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60

Query: 61 KIEDILVRFDRTLLVVDP 79
          KIEDILVRFDRTLLVVDP
Sbjct: 61 KIEDILVRFDRTLLVVDP 78

BLAST of Csa3G187290 vs. NCBI nr
Match: gi|460385974|ref|XP_004238675.1| (PREDICTED: 40S ribosomal protein S16 [Solanum lycopersicum])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQTKK+I+DIL+R+DRTLLV
Sbjct: 63  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILIRYDRTLLV 122

Query: 77  VDP 79
            DP
Sbjct: 123 ADP 125

BLAST of Csa3G187290 vs. NCBI nr
Match: gi|527203164|gb|EPS69719.1| (hypothetical protein M569_05046, partial [Genlisea aurea])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RFSGVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTLLV
Sbjct: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 77  VDP 79
            DP
Sbjct: 121 ADP 123

BLAST of Csa3G187290 vs. NCBI nr
Match: gi|527194037|gb|EPS63821.1| (hypothetical protein M569_10962, partial [Genlisea aurea])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RFSGVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTLLV
Sbjct: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 77  VDP 79
            DP
Sbjct: 121 ADP 123

BLAST of Csa3G187290 vs. NCBI nr
Match: gi|449438394|ref|XP_004136973.1| (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1

Query: 17  RFSGVDMRIRVKGG-HTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RFSGVDMRIRVKGG HT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTLLV
Sbjct: 60  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 119

Query: 77  VDP 79
            DP
Sbjct: 120 ADP 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS16_LUPPO3.1e-2384.6240S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1[more]
RS16_GOSHI3.5e-2285.7140S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1[more]
RS161_ARATH1.7e-2174.6540S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1[more]
RS163_ARATH1.7e-2174.6540S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1[more]
RS16_TORRU8.5e-2175.3840S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L661_CUCSA8.6e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187290 PE=4 SV=1[more]
A0A0V0H547_SOLCH2.7e-2187.30Putative ovule protein OS=Solanum chacoense PE=3 SV=1[more]
M0ZY89_SOLTU2.7e-2187.30Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004124 PE=3 SV=1[more]
A0A0A0L6F6_CUCSA2.7e-2188.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202730 PE=3 SV=1[more]
K4BW97_SOLLC2.7e-2187.30Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G09990.19.7e-2374.65 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT5G18380.19.7e-2374.65 Ribosomal protein S5 domain 2-like superfamily protein[more]
AT3G04230.14.1e-2170.42 Ribosomal protein S5 domain 2-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|700202322|gb|KGN57455.1|1.2e-35100.00hypothetical protein Csa_3G187290 [Cucumis sativus][more]
gi|460385974|ref|XP_004238675.1|3.8e-2187.30PREDICTED: 40S ribosomal protein S16 [Solanum lycopersicum][more]
gi|527203164|gb|EPS69719.1|3.8e-2188.89hypothetical protein M569_05046, partial [Genlisea aurea][more]
gi|527194037|gb|EPS63821.1|3.8e-2188.89hypothetical protein M569_10962, partial [Genlisea aurea][more]
gi|449438394|ref|XP_004136973.1|3.8e-2188.89PREDICTED: 40S ribosomal protein S16 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000754Ribosomal_S9
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G187290.1Csa3G187290.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 13..78
score: 5.7
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 20..77
score: 5.
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 17..61
score: 3.
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 16..76
score: 9.4
NoneNo IPR availablePANTHERPTHR21569:SF6SUBFAMILY NOT NAMEDcoord: 13..78
score: 5.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G187290CsGy3G017710Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None