CsGy3G017710 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G017710
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description40S ribosomal protein S16
LocationChr3 : 13654018 .. 13654356 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGGCTAGGAAAAGACGACATTGGTAGTCACCTACTACAAGCACGGTAGAGGTTTGATTAAGATCAATGGCCTCCCAATTGAACTTGTAGACCCGAAGATCCTCCATTCAAGGCTTATGAGCCTATCCTCCTCCTTGGATGACACAGGTTCTCTGGTGTCGATATGCGTATCAGAGTAAAGGGTGGTCACACCTTGCAGATTTACGCCATCCGCCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGACCAAGAAGAAAATCGAAGACATTCTTGTCAGGTTCGACAGGACTTTACTCGTCGTCGATCCCTGA

mRNA sequence

ATGTTTTGGCTAGGAAAAGACGACATTGGTAGTCACCTACTACAAGCACGGTTCTCTGGTGTCGATATGCGTATCAGAGTAAAGGGTGGTCACACCTTGCAGATTTACGCCATCCGCCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGACCAAGAAGAAAATCGAAGACATTCTTGTCAGGTTCGACAGGACTTTACTCGTCGTCGATCCCTGA

Coding sequence (CDS)

ATGTTTTGGCTAGGAAAAGACGACATTGGTAGTCACCTACTACAAGCACGGTTCTCTGGTGTCGATATGCGTATCAGAGTAAAGGGTGGTCACACCTTGCAGATTTACGCCATCCGCCAGAGTATCGCCAAGGCCTTGGTCGCGTTCTACCAGAAGTACGTGGACGAGCAGACCAAGAAGAAAATCGAAGACATTCTTGTCAGGTTCGACAGGACTTTACTCGTCGTCGATCCCTGA

Protein sequence

MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLVVDP
Homology
[Close]
BLAST of CsGy3G017710 vs. NCBI nr
Match: KGN57455.1 (hypothetical protein Csa_3G187290 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 2.4e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60
          MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK
Sbjct: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60

Query: 61 KIEDILVRFDRTLLVVDP 79
          KIEDILVRFDRTLLVVDP
Sbjct: 61 KIEDILVRFDRTLLVVDP 78

[Close]
BLAST of CsGy3G017710 vs. NCBI nr
Match: OMO54268.1 (Ribosomal protein S9 [Corchorus olitorius])

HSP 1 Score: 108.6 bits (270), Expect = 9.6e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 17  RFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQTKK+I+DILVR+DRTLLV
Sbjct: 62  RFAGVDMRIRVKGGGHTAQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILVRYDRTLLV 121

Query: 77  VDP 79
            DP
Sbjct: 122 ADP 124

[Close]
BLAST of CsGy3G017710 vs. NCBI nr
Match: XP_004136973.1 (PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >KGN43920.1 hypothetical protein Csa_7G073560 [Cucumis sativus] >KGN57515.1 hypothetical protein Csa_3G202730 [Cucumis sativus] >KGN57574.1 hypothetical protein Csa_3G215620 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 17  RFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RFSGVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTLLV
Sbjct: 60  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 119

Query: 77  VDP 79
            DP
Sbjct: 120 ADP 122

[Close]
BLAST of CsGy3G017710 vs. NCBI nr
Match: XP_004238675.1 (40S ribosomal protein S16 [Solanum lycopersicum] >XP_006355978.1 PREDICTED: 40S ribosomal protein S16 [Solanum tuberosum] >XP_015074502.1 PREDICTED: 40S ribosomal protein S16 [Solanum pennellii])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 17  RFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQTKK+I+DIL+R+DRTLLV
Sbjct: 63  RFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILIRYDRTLLV 122

Query: 77  VDP 79
            DP
Sbjct: 123 ADP 125

[Close]
BLAST of CsGy3G017710 vs. NCBI nr
Match: EPS63821.1 (hypothetical protein M569_10962, partial [Genlisea aurea])

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 17  RFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RFSGVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTLLV
Sbjct: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120

Query: 77  VDP 79
            DP
Sbjct: 121 ADP 123

[Close]
BLAST of CsGy3G017710 vs. TAIR10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-22
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 9   IGSHLLQARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV  GGHT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

[Close]
BLAST of CsGy3G017710 vs. TAIR10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-22
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 9   IGSHLLQARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV  GGHT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

[Close]
BLAST of CsGy3G017710 vs. TAIR10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 6.9e-21
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 9   IGSHLLQARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GVDMRIR   GG+T ++YAIRQSIAKALVA+YQKYVDEQ+KK+I+DIL+
Sbjct: 58  LGKH----RFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILM 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

[Close]
BLAST of CsGy3G017710 vs. Swiss-Prot
Match: sp|P16149|RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus OX=3874 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-23
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 15  QARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTL 74
           ++RF+GVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTL
Sbjct: 59  KSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL 118

Query: 75  LVVDP 79
           LV DP
Sbjct: 119 LVADP 123

[Close]
BLAST of CsGy3G017710 vs. Swiss-Prot
Match: sp|P46293|RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-22
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0 

Query: 17  RFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILV +DRTLLV
Sbjct: 61  RFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLV 120

Query: 77  VDP 79
            DP
Sbjct: 121 ADP 123

[Close]
BLAST of CsGy3G017710 vs. Swiss-Prot
Match: sp|Q9SK22|RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-21
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 9   IGSHLLQARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV  GGHT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

[Close]
BLAST of CsGy3G017710 vs. Swiss-Prot
Match: sp|Q42340|RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-21
Identity = 53/71 (74.65%), Postives = 62/71 (87.32%), Query Frame = 0 

Query: 9   IGSHLLQARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILV 68
           +G H    RF+GV+MRIRV  GGHT Q+YAIRQSIAKALVA+YQKYVDEQ+KK+I+DILV
Sbjct: 58  LGKH----RFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILV 117

Query: 69  RFDRTLLVVDP 79
           R+DRTLLV DP
Sbjct: 118 RYDRTLLVADP 124

[Close]
BLAST of CsGy3G017710 vs. Swiss-Prot
Match: sp|Q9XEK7|RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-20
Identity = 49/65 (75.38%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 15  QARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTL 74
           +++F+GVDMRIRVK GG+T QIYAIRQSIAKALVA++QKYVDEQ+KK+I+D+L+R+DRTL
Sbjct: 56  RSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTL 115

Query: 75  LVVDP 79
           LV DP
Sbjct: 116 LVADP 120

[Close]
BLAST of CsGy3G017710 vs. TrEMBL
Match: tr|A0A0A0L661|A0A0A0L661_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187290 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60
          MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK
Sbjct: 1  MFWLGKDDIGSHLLQARFSGVDMRIRVKGGHTLQIYAIRQSIAKALVAFYQKYVDEQTKK 60

Query: 61 KIEDILVRFDRTLLVVDP 79
          KIEDILVRFDRTLLVVDP
Sbjct: 61 KIEDILVRFDRTLLVVDP 78

[Close]
BLAST of CsGy3G017710 vs. TrEMBL
Match: tr|A0A1R3G848|A0A1R3G848_9ROSI (Ribosomal protein S9 OS=Corchorus olitorius OX=93759 GN=COLO4_36532 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.4e-21
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 17  RFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RF+GVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQTKK+I+DILVR+DRTLLV
Sbjct: 62  RFAGVDMRIRVKGGGHTAQIYAIRQSIAKALVAFYQKYVDEQTKKEIKDILVRYDRTLLV 121

Query: 77  VDP 79
            DP
Sbjct: 122 ADP 124

[Close]
BLAST of CsGy3G017710 vs. TrEMBL
Match: tr|I1KM19|I1KM19_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100779794 PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 15  QARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTL 74
           ++RF+GVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTL
Sbjct: 70  KSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL 129

Query: 75  LVVDP 79
           LV DP
Sbjct: 130 LVADP 134

[Close]
BLAST of CsGy3G017710 vs. TrEMBL
Match: tr|I1JE09|I1JE09_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100812117 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 15  QARFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTL 74
           ++RF+GVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTL
Sbjct: 70  KSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL 129

Query: 75  LVVDP 79
           LV DP
Sbjct: 130 LVADP 134

[Close]
BLAST of CsGy3G017710 vs. TrEMBL
Match: tr|A0A0A0L6F6|A0A0A0L6F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 17  RFSGVDMRIRVK-GGHTLQIYAIRQSIAKALVAFYQKYVDEQTKKKIEDILVRFDRTLLV 76
           RFSGVDMRIRVK GGHT QIYAIRQSIAKALVAFYQKYVDEQ+KK+I+DILVR+DRTLLV
Sbjct: 60  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 119

Query: 77  VDP 79
            DP
Sbjct: 120 ADP 122

The following BLAST results are available for this feature:
BLAST of CsGy3G017710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57455.12.4e-35100.00hypothetical protein Csa_3G187290 [Cucumis sativus][more]
OMO54268.19.6e-2188.89Ribosomal protein S9 [Corchorus olitorius][more]
XP_004136973.11.6e-2088.89PREDICTED: 40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 PREDICTED... [more]
XP_004238675.11.6e-2087.3040S ribosomal protein S16 [Solanum lycopersicum] >XP_006355978.1 PREDICTED: 40S ... [more]
EPS63821.11.6e-2088.89hypothetical protein M569_10962, partial [Genlisea aurea][more]
BLAST of CsGy3G017710 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G09990.11.6e-2274.65Ribosomal protein S5 domain 2-like superfamily protein[more]
AT5G18380.11.6e-2274.65Ribosomal protein S5 domain 2-like superfamily protein[more]
AT3G04230.16.9e-2170.42Ribosomal protein S5 domain 2-like superfamily protein[more]
BLAST of CsGy3G017710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P16149|RS16_LUPPO5.4e-2384.6240S ribosomal protein S16 OS=Lupinus polyphyllus OX=3874 GN=RPS16 PE=2 SV=1[more]
sp|P46293|RS16_GOSHI7.8e-2285.7140S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1[more]
sp|Q9SK22|RS161_ARATH2.9e-2174.6540S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1[more]
sp|Q42340|RS163_ARATH2.9e-2174.6540S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1[more]
sp|Q9XEK7|RS16_TORRU1.5e-2075.3840S ribosomal protein S16 OS=Tortula ruralis OX=38588 GN=RPS16 PE=2 SV=1[more]
BLAST of CsGy3G017710 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L661|A0A0A0L661_CUCSA1.6e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187290 PE=4 SV=1[more]
tr|A0A1R3G848|A0A1R3G848_9ROSI6.4e-2188.89Ribosomal protein S9 OS=Corchorus olitorius OX=93759 GN=COLO4_36532 PE=3 SV=1[more]
tr|I1KM19|I1KM19_SOYBN1.1e-2084.62Uncharacterized protein OS=Glycine max OX=3847 GN=100779794 PE=3 SV=2[more]
tr|I1JE09|I1JE09_SOYBN1.1e-2084.62Uncharacterized protein OS=Glycine max OX=3847 GN=100812117 PE=3 SV=1[more]
tr|A0A0A0L6F6|A0A0A0L6F6_CUCSA1.1e-2088.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR000754Ribosomal_S9
IPR014721Ribosomal_S5_D2-typ_fold_subgr
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G017710.1CsGy3G017710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 10..78
e-value: 1.3E-22
score: 82.3
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 20..77
e-value: 2.3E-6
score: 28.1
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 15..78
NoneNo IPR availablePANTHERPTHR21569:SF7SUBFAMILY NOT NAMEDcoord: 15..78
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILYSSF54211Ribosomal protein S5 domain 2-likecoord: 16..76

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G017710Csa3G187290Cucumber (Chinese Long) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G017710Cucurbita maxima (Rimu)cgybcmaB312
CsGy3G017710Cucurbita maxima (Rimu)cgybcmaB371
CsGy3G017710Cucurbita moschata (Rifu)cgybcmoB285
CsGy3G017710Cucurbita moschata (Rifu)cgybcmoB342
CsGy3G017710Cucurbita pepo (Zucchini)cgybcpeB383
CsGy3G017710Cucurbita pepo (Zucchini)cgybcpeB401
CsGy3G017710Bottle gourd (USVL1VR-Ls)cgyblsiB198
CsGy3G017710Melon (DHL92) v3.5.1cgybmeB210
CsGy3G017710Melon (DHL92) v3.6.1cgybmedB215
CsGy3G017710Watermelon (Charleston Gray)cgybwcgB214
CsGy3G017710Watermelon (97103) v1cgybwmB229
CsGy3G017710Wild cucumber (PI 183967)cgybcpiB110
CsGy3G017710Silver-seed gourdcarcgybB0190
CsGy3G017710Silver-seed gourdcarcgybB0758
CsGy3G017710Cucumber (Chinese Long) v3cgybcucB117
CsGy3G017710Watermelon (97103) v2cgybwmbB206
CsGy3G017710Wax gourdcgybwgoB271