Csa3G175580 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G175580
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 11804346 .. 11805785 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGCTTTAAATCTGGAACCACGTACAAATGGTTTTTTCCATAACAGCTTTCATCCCTAAGGTTGTCATCTTTGCTTTGCTGCTCCTTGTGTCGTTCAATGTTTCCGCGATGAATCAGCTCGTCGAAACCAATAAAGCTGCTCGGATAGCTAGTAAGTTTTCAGCTTCCAATTATCACTCAACTCGAAAACTTATTAGTAAACATATGGTTTACATAGTAAGAATGATCTATAATAATTTTTTATTCGTTCATACTTTAATATTACCTTGAGTTTGGAATTCGAATACAGAACTTTTTGTTCATTCAATAACCTCTAAAACATAAACTTTAGGTAGGGTTAGGGTTATTCTTCATCGAGGTTGATTTTTGGCTAAAACTGACACCGATCCCACTGATTTGTTCGTTTAGAGATTGGTTGGGTGGTAGTCAAAATTTATGAGGGCCAATGGAACGTCCAACCGACTACACAAATGATCGCCTGGTTTTGGGGAACTAAGATGAAAAAATCCTATAGTTCTTAGTGGTGTTGGTTGGTTGGTGATCGGAAAAAAGAAAAAAGATACCAAGAAGAGAGAAGAGAATCTAGTTTTGAGAAAAATCAAAATATTGGTTGACATGGTGATATACCCATTGATAAATTCGTAAGTTGAAGGATTCGACGTTAATATTAATATTATGTTTGTACATCAAGAAAAATACAATTTATTTAGTTTAATATAAATATGAATACTAACGTCAATACCCTTCTAATATTTGTAATACTGAAATCGCAAATTTGAGTATGCAATAATAGTATTAAATATTTTCTATCATCAAAATATGACAATTAGTTGGTGAGAGCAAAGTCTCACATTGTACATACTGTTTACTTGCAAACATAAACTTTTACGATTTTAATTACTTTTAGTCTCATCAAGGAAAGATCTTAAACCAAATAGGTATAACCGTTCTTCATTTATATACCACAAATCTTCTCTCTTTTATCCTACTTAATAATATGAGACTTTGGTGGCATCCAAAGGAGTTGGTTTATTTAGCTTATTTGTCACACATATATATTTTTTCTTTTCAATTGAATAGGTAAGACAAGGATTGAAAAGAAGGGTGTGACGAATGACAAATGTAGAAGATTAATCGCTCGAGAGTTCGACTGGCCGCCTTGGAACGGAAATTATGCCATCCCTCCTCCTTCTAATCCTACTCGATCTTGTTTAACATGTTAAACTTAATTATAACTTTATATATTTCTTATAAAAAAGTTTTTGAGTTATTTAATGATAGTTTAACATCAAGTTGCATTAGAAAAGAACATGATGTGATTATGCATTCAAACTTCTACACCATCATTTTCTATTGATATAAGTATTAAATTCATCTTTGAACTATAAAACTGCTTGTATTTTTCGTTCATTAGTGGTATAATATTATAATTAATCAAT

mRNA sequence

ATGGTTTTTTCCATAACAGCTTTCATCCCTAAGGTTGTCATCTTTGCTTTGCTGCTCCTTGTGTCGTTCAATGTTTCCGCGATGAATCAGCTCGTCGAAACCAATAAAGCTGCTCGGATAGCTAGTAAGACAAGGATTGAAAAGAAGGGTGTGACGAATGACAAATGTAGAAGATTAATCGCTCGAGAGTTCGACTGGCCGCCTTGGAACGGAAATTATGCCATCCCTCCTCCTTCTAATCCTACTCGATCTTGTTTAACATGTTAA

Coding sequence (CDS)

ATGGTTTTTTCCATAACAGCTTTCATCCCTAAGGTTGTCATCTTTGCTTTGCTGCTCCTTGTGTCGTTCAATGTTTCCGCGATGAATCAGCTCGTCGAAACCAATAAAGCTGCTCGGATAGCTAGTAAGACAAGGATTGAAAAGAAGGGTGTGACGAATGACAAATGTAGAAGATTAATCGCTCGAGAGTTCGACTGGCCGCCTTGGAACGGAAATTATGCCATCCCTCCTCCTTCTAATCCTACTCGATCTTGTTTAACATGTTAA

Protein sequence

MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLIAREFDWPPWNGNYAIPPPSNPTRSCLTC*
Homology
[Close]
BLAST of Csa3G175580 vs. TrEMBL
Match: A0A0A0L9E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175580 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60
          MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI
Sbjct: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60

Query: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 89
          AREFDWPPWNGNYAIPPPSNPTRSCLTC
Sbjct: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 88

[Close]
BLAST of Csa3G175580 vs. NCBI nr
Match: gi|700202124|gb|KGN57257.1| (hypothetical protein Csa_3G175580 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.0e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60
          MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI
Sbjct: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60

Query: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 89
          AREFDWPPWNGNYAIPPPSNPTRSCLTC
Sbjct: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 88

The following BLAST results are available for this feature:
BLAST of Csa3G175580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9E5_CUCSA2.8e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175580 PE=4 SV=1[more]
BLAST of Csa3G175580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202124|gb|KGN57257.1|4.0e-43100.00hypothetical protein Csa_3G175580 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU167483cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G175580.1Csa3G175580.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU167483CU167483transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G175580Lsi05G013320Bottle gourd (USVL1VR-Ls)culsiB210
Csa3G175580CSPI03G15840Wild cucumber (PI 183967)cpicuB120
Csa3G175580CsGy3G015930Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G175580Watermelon (97103) v2cuwmbB204
Csa3G175580Wax gourdcuwgoB269
Csa3G175580Cucumber (Gy14) v1cgycuB366
Csa3G175580Cucurbita maxima (Rimu)cmacuB329
Csa3G175580Cucurbita maxima (Rimu)cmacuB703
Csa3G175580Cucurbita moschata (Rifu)cmocuB317
Csa3G175580Cucurbita moschata (Rifu)cmocuB694
Csa3G175580Melon (DHL92) v3.5.1cumeB236
Csa3G175580Watermelon (Charleston Gray)cuwcgB222
Csa3G175580Watermelon (97103) v1cuwmB233
Csa3G175580Cucurbita pepo (Zucchini)cpecuB214
Csa3G175580Cucurbita pepo (Zucchini)cpecuB394
Csa3G175580Melon (DHL92) v3.6.1cumedB223
Csa3G175580Silver-seed gourdcarcuB0401
Csa3G175580Silver-seed gourdcarcuB0885