CsGy3G015930 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G015930
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 11836750 .. 11838303 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGTAACAAAGTTTGTTAATTTGGGTTGTTTATTTATAAACGCCACCAACATTATCTATATATTCAAAACATTATTTCAGCTTTAAATCTGGAACCACGTACAAATGGTTTTTTCCATAACAGCTTTCATCCCTAAGGTTGTCATCTTTGCTTTGCTGCTCCTTGTGTCGTTCAATGTTTCCGCTATGAATCAGCTCGTCGAAACCAATAGAGCTGCTCGGATAGCTAGTAAGTTTTCAGCTTCCAATTATCACTCAACTCGAAAACTTATTAGTAAACATATGGTTTACATAGTAAGAATGATCTATAATAATTTTTTATTCGTTCATACTTTAATATTACCTTGAGTTTGGAATTCTAATACAGAACTATGTTGATTCAATAACCTCTAAAACATAAACTTTAGGTAGGGTTAGGGTTATTCTTCATCGATTCATCGAGGTTGATTTTTGGCTAAAACTGACACCGATCCCACTGATTTGTTCGTTTAGAGATTAGTTGGGTGGTAGTCAAAATTTATGAGGGCCAATAATGGAACGTCCAACCGACTACACAAATGATCGCCTGGTTTTGGGGAACTAAGATGAAAAAATCCTATAGTTCTTAGTGGTGTTGGTTGGTTGGTGATCGGAAAAAAGAAAAAAATACCAGGAAGAAAGAAGAGAATCCAGTTTTGAGAAAAATCAAAATATTCGTTCACATGGTGATATATCCATTGATAAATTCATAAGTTGAAGGATTCGACATTAGTATTAATATTACGTTTGTACGTCAAGAAAAATACAATTTATTTAGTTTAATATAAATATGAATACTAACGTCAATACCCTTCTAATATTTGTAATACTGAAATCGCAAATTTGAGTATGCAATAATAGTATTAAATATTTTCTATCATCAAAATATGACAATTAGTTGGTGAGAGCAAAGTCTCACATTGTATATACTGTTTACTTGCAAACATAAACTTTTATGATTTTAATTACTTTTAGTCTCATCAAGGAAAGATCTTAAACCAAATAGGTATAACCGTTCTTCATTTATATACCACAAATCTTCTCTCTTTTATCCTACTTAATAATATGAGACTTTGGTGGCATCCAAAGGAGTTGGTTTATTTAGCTTATTTGTCACACATATATATTTTTTCTTTTCAATTGAATAGGTAAGACAAGGATTGAAAAGAAGGGTGTGACGAATGACAAATGTAGAAGATTAATTGCTCGAGAGTTCGATTGGCCGCCTTGGAACGGAAATTATGCCATCCCTCCTCCTTCTAATCCTACTCGATCTTGTTTAACATGTTAAACTTAATTATAACTTTATATATTTCTTATAAAAAAGTTTTTGAGTTATTTAATGATAGTTTAACATCAAGTTGCATTGGAAAAGAAAATGACGTGATTATGCGTTCAAACTTCTACACCATCATTTTCTATTGATATAAATATTAAATTCATCTTTGAACTATAAAACTGCTTGTATTTTTCGTTCATTAGTGGTATAATATTATAATTAATCAATAAATTTGTCTATTTTATATTTTATCATTT

mRNA sequence

GTTGTAACAAAGTTTGTTAATTTGGGTTGTTTATTTATAAACGCCACCAACATTATCTATATATTCAAAACATTATTTCAGCTTTAAATCTGGAACCACGTACAAATGGTTTTTTCCATAACAGCTTTCATCCCTAAGGTTGTCATCTTTGCTTTGCTGCTCCTTGTGTCGTTCAATGTTTCCGCTATGAATCAGCTCGTCGAAACCAATAGAGCTGCTCGGATAGCTAGTAAGACAAGGATTGAAAAGAAGGGTGTGACGAATGACAAATGTAGAAGATTAATTGCTCGAGAGTTCGATTGGCCGCCTTGGAACGGAAATTATGCCATCCCTCCTCCTTCTAATCCTACTCGATCTTGTTTAACATGTTAAACTTAATTATAACTTTATATATTTCTTATAAAAAAGTTTTTGAGTTATTTAATGATAGTTTAACATCAAGTTGCATTGGAAAAGAAAATGACGTGATTATGCGTTCAAACTTCTACACCATCATTTTCTATTGATATAAATATTAAATTCATCTTTGAACTATAAAACTGCTTGTATTTTTCGTTCATTAGTGGTATAATATTATAATTAATCAATAAATTTGTCTATTTTATATTTTATCATTT

Coding sequence (CDS)

ATGGTTTTTTCCATAACAGCTTTCATCCCTAAGGTTGTCATCTTTGCTTTGCTGCTCCTTGTGTCGTTCAATGTTTCCGCTATGAATCAGCTCGTCGAAACCAATAGAGCTGCTCGGATAGCTAGTAAGACAAGGATTGAAAAGAAGGGTGTGACGAATGACAAATGTAGAAGATTAATTGCTCGAGAGTTCGATTGGCCGCCTTGGAACGGAAATTATGCCATCCCTCCTCCTTCTAATCCTACTCGATCTTGTTTAACATGTTAA

Protein sequence

MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNRAARIASKTRIEKKGVTNDKCRRLIAREFDWPPWNGNYAIPPPSNPTRSCLTC
Homology
[Close]
BLAST of CsGy3G015930 vs. NCBI nr
Match: KGN57257.1 (hypothetical protein Csa_3G175580 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNRAARIASKTRIEKKGVTNDKCRRLI 60
          MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETN+AARIASKTRIEKKGVTNDKCRRLI
Sbjct: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60

Query: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 89
          AREFDWPPWNGNYAIPPPSNPTRSCLTC
Sbjct: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 88

[Close]
BLAST of CsGy3G015930 vs. TrEMBL
Match: tr|A0A0A0L9E5|A0A0A0L9E5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175580 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNRAARIASKTRIEKKGVTNDKCRRLI 60
          MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETN+AARIASKTRIEKKGVTNDKCRRLI
Sbjct: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60

Query: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 89
          AREFDWPPWNGNYAIPPPSNPTRSCLTC
Sbjct: 61 AREFDWPPWNGNYAIPPPSNPTRSCLTC 88

The following BLAST results are available for this feature:
BLAST of CsGy3G015930 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57257.11.6e-4098.86hypothetical protein Csa_3G175580 [Cucumis sativus][more]
BLAST of CsGy3G015930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G015930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G015930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L9E5|A0A0A0L9E5_CUCSA1.1e-4098.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175580 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G015930.1CsGy3G015930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G015930Csa3G175580Cucumber (Chinese Long) v2cgybcuB109
CsGy3G015930CSPI03G15840Wild cucumber (PI 183967)cgybcpiB110
CsGy3G015930CsaV3_3G016050Cucumber (Chinese Long) v3cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G015930Silver-seed gourdcarcgybB0381
CsGy3G015930Silver-seed gourdcarcgybB0859
CsGy3G015930Watermelon (97103) v2cgybwmbB196
CsGy3G015930Wax gourdcgybwgoB257
CsGy3G015930Cucurbita maxima (Rimu)cgybcmaB342
CsGy3G015930Cucurbita maxima (Rimu)cgybcmaB417
CsGy3G015930Cucurbita moschata (Rifu)cgybcmoB312
CsGy3G015930Cucurbita moschata (Rifu)cgybcmoB394
CsGy3G015930Cucurbita pepo (Zucchini)cgybcpeB327
CsGy3G015930Cucurbita pepo (Zucchini)cgybcpeB370
CsGy3G015930Bottle gourd (USVL1VR-Ls)cgyblsiB197
CsGy3G015930Melon (DHL92) v3.5.1cgybmeB200
CsGy3G015930Melon (DHL92) v3.6.1cgybmedB201
CsGy3G015930Watermelon (Charleston Gray)cgybwcgB203
CsGy3G015930Watermelon (97103) v1cgybwmB217