Lsi05G013320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G013320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 21095417 .. 21096761 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATTATTCCACAGCAGCTTTCATTGCTAAGGTTGTCTTCTTTGCTTTGCTGCTTCTTGCTTTCGATGTTTCCGCGAGGGACCTCGTTGATGAAACCAATAACGTGGCTCCGATAATTCGTAAGTCTTCACTTTTCATAATAATCTTGAATTAAATAATCATCACTCAACTCGAAAACTTATTAATAAATGTGTATGGTTTACATAAATAATGATCTAATCTTTTATTTGTACTTTAATATTACCTCTAAAACATAAACTTTAAGTAGGGTTGGAGTTGTTCATCAGTGGATCGGTGTTGGTTTTGAGCTAAAACTACGCCAATCACTAATTTGTTGGTTTAATTTGGTTGGTGGTCCTCAAATTTGGGAGGGCCTATGGAACCAACCGACCATACAAATGATCGATTGGTTTTGGGAAGGAACTCTGCCGAAGCCACTAAGAAGAAGAGATCTTAATTTTGAGTAAGGATAAAAATACCCGTGACATCTCAATATATCTATAAATTGAAGGATTCTACATCGATATTAAATATCTATTGATATTAATAATAGTATCCATAACTTTTTTTTTGAACAAATTACGATTAGAGAGGGAGGGATCAGAAGGTGCACCAAGGCATCTCAACTAGGTTGACACACTCTTAGCACTCTCATCACATTCCAAAACCAAACGGATAGATTCATTCAAAAGATAAAATAATATTCATAACTTAGTTTGGAAGTAAAAAAAAAAAACTTAATTATTAATCTAAATAAAAAAAATTTTACTAACAGAAATATTCGTCGATATCAATATTTTATCAATATATATCCAATATAAAATCAAAATCTTGATATCAATATGATGATGAAAAACCAACCACCGACAGGAGGAAGGTCATTAACACCTTCCACATATCACCGGTCCACAATGATATAATATTGTTCATTTTAATTGGCATAAACTCTCATGACTTTGCTTTTGGTTTCACTTCGAAAGGTCTCATATGCTAACAAAGATAATTATCTCTCAATAATATACCATGAATCTTTCTCTTACTTAGTCAATGTGAAACTTTGTTCGCACTCGAACAGGTTGGCTCACCTTATTCACCCACAGTTTTATTCAAATTATCAATATCTTTTAGGAATATTTGGATCTAAAAATAGAGAAAGAATGTGTATTGTTTTCACCAATTGTATTACAATTTTATTTTGTCAATGAATAATAGGTAAGACAGGGATGGAGACAAAGGTTGTGAATTTGAGATGTAGAAGATTAATTGCTCGAGAGTTGGATGGGGCTTGGAGAGGAAATTATGCAAACCCTCCTCCTCCATTCTCTCCCATTCCTGTTTAA

mRNA sequence

ATGGCTTATTATTCCACAGCAGCTTTCATTGCTAAGGTTGTCTTCTTTGCTTTGCTGCTTCTTGCTTTCGATGTTTCCGCGAGGGACCTCGTTGATGAAACCAATAACGTGGCTCCGATAATTCGTAAGACAGGGATGGAGACAAAGGTTGTGAATTTGAGATGTAGAAGATTAATTGCTCGAGAGTTGGATGGGGCTTGGAGAGGAAATTATGCAAACCCTCCTCCTCCATTCTCTCCCATTCCTGTTTAA

Coding sequence (CDS)

ATGGCTTATTATTCCACAGCAGCTTTCATTGCTAAGGTTGTCTTCTTTGCTTTGCTGCTTCTTGCTTTCGATGTTTCCGCGAGGGACCTCGTTGATGAAACCAATAACGTGGCTCCGATAATTCGTAAGACAGGGATGGAGACAAAGGTTGTGAATTTGAGATGTAGAAGATTAATTGCTCGAGAGTTGGATGGGGCTTGGAGAGGAAATTATGCAAACCCTCCTCCTCCATTCTCTCCCATTCCTGTTTAA

Protein sequence

MAYYSTAAFIAKVVFFALLLLAFDVSARDLVDETNNVAPIIRKTGMETKVVNLRCRRLIARELDGAWRGNYANPPPPFSPIPV

Homology

[Close]

BLAST of Lsi05G013320 vs. TrEMBL
Match: A0A0A0L9E5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175580 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 4  YSTAAFIAKVVFFA-LLLLAFDVSARDLVDETNNVAPIIRKTGMETK-VVNLRCRRLIAR 63
          +S  AFI KVV FA LLL++F+VSA + + ETN  A I  KT +E K V N +CRRLIAR
Sbjct: 3  FSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLIAR 62

Query: 64 ELD-GAWRGNYANPPP 77
          E D   W GNYA PPP
Sbjct: 63 EFDWPPWNGNYAIPPP 78

[Close]

BLAST of Lsi05G013320 vs. NCBI nr
Match: gi|700202124|gb|KGN57257.1| (hypothetical protein Csa_3G175580 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 4  YSTAAFIAKVVFFA-LLLLAFDVSARDLVDETNNVAPIIRKTGMETK-VVNLRCRRLIAR 63
          +S  AFI KVV FA LLL++F+VSA + + ETN  A I  KT +E K V N +CRRLIAR
Sbjct: 3  FSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLIAR 62

Query: 64 ELD-GAWRGNYANPPP 77
          E D   W GNYA PPP
Sbjct: 63 EFDWPPWNGNYAIPPP 78

The following BLAST results are available for this feature:

BLAST of Lsi05G013320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G013320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9E5_CUCSA	1.4e-09	57.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G175580 PE=4 SV=1	[more]

BLAST of Lsi05G013320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G013320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202124\|gb\|KGN57257.1\|	2.1e-09	57.89	hypothetical protein Csa_3G175580 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G013320.1	Lsi05G013320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G013320	Csa3G175580	Cucumber (Chinese Long) v2	culsiB210
Lsi05G013320	CSPI03G15840	Wild cucumber (PI 183967)	cpilsiB208
Lsi05G013320	CsaV3_3G016050	Cucumber (Chinese Long) v3	cuclsiB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G013320	Wax gourd	lsiwgoB444
Lsi05G013320	Cucumber (Gy14) v1	cgylsiB416
Lsi05G013320	Cucurbita maxima (Rimu)	cmalsiB312
Lsi05G013320	Cucurbita maxima (Rimu)	cmalsiB688
Lsi05G013320	Cucurbita moschata (Rifu)	cmolsiB300
Lsi05G013320	Cucurbita moschata (Rifu)	cmolsiB681
Lsi05G013320	Cucurbita pepo (Zucchini)	cpelsiB172
Lsi05G013320	Cucurbita pepo (Zucchini)	cpelsiB367
Lsi05G013320	Wild cucumber (PI 183967)	cpilsiB384
Lsi05G013320	Cucumber (Chinese Long) v2	culsiB380
Lsi05G013320	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G013320	Watermelon (Charleston Gray)	lsiwcgB328
Lsi05G013320	Watermelon (Charleston Gray)	lsiwcgB336
Lsi05G013320	Watermelon (97103) v1	lsiwmB366
Lsi05G013320	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G013320	Cucumber (Gy14) v2	cgyblsiB346
Lsi05G013320	Melon (DHL92) v3.6.1	lsimedB356
Lsi05G013320	Melon (DHL92) v3.6.1	lsimedB397
Lsi05G013320	Silver-seed gourd	carlsiB345
Lsi05G013320	Silver-seed gourd	carlsiB791
Lsi05G013320	Cucumber (Chinese Long) v3	cuclsiB245
Lsi05G013320	Cucumber (Chinese Long) v3	cuclsiB405
Lsi05G013320	Watermelon (97103) v2	lsiwmbB334