Csa3G165680 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G165680
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 10951049 .. 10951585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACGACTTTCTGCTAAGTCGTCTTCACCCATAACTGGCATCCTTGACATTACTCCTGCATCGAAGCGAAAGCGAAACATTAGCAAAAGTGCCCAACAACAAGCTGCTACTGTCAAAATGAAAACAACTGAGAAAGAAAAAGTAGAAAAAGGGTTGAGCTCGGAAGAGGATGATAAAGAAGATGAAGATGGATTGGGAAATAGTAGAGTAGTATTGAATGATGGAGGTGAAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAATGAGACTGAATAATGAAATTATTGAATGGGGAATGGGGGAGTCAAGAGGCAATAATAACAATGGATGCAATGAGAAAGTGAGATGTACTGAAGATCATAATCATAATTATGGTTCTAATTGTTCTTCTTCAGTGAATTCAGCTTTGGAAATGGATCAATGGTTGAATTGGGATTGGGATCATCAAGATAATGGATCAATGGAAGGATGTAGTTTGGATCAATGGGAACTTGAGGAAATTTCATCTTGGGTTATGGGAAACTGA

mRNA sequence

ATGACACGACTTTCTGCTAAGTCGTCTTCACCCATAACTGGCATCCTTGACATTACTCCTGCATCGAAGCGAAAGCGAAACATTAGCAAAAGTGCCCAACAACAAGCTGCTACTGTCAAAATGAAAACAACTGAGAAAGAAAAAGTAGAAAAAGGGTTGAGCTCGGAAGAGGATGATAAAGAAGATGAAGATGGATTGGGAAATAGTAGAGTAGTATTGAATGATGGAGGTGAAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAATGAGACTGAATAATGAAATTATTGAATGGGGAATGGGGGAGTCAAGAGGCAATAATAACAATGGATGCAATGAGAAAGTGAGATGTACTGAAGATCATAATCATAATTATGGTTCTAATTGTTCTTCTTCAGTGAATTCAGCTTTGGAAATGGATCAATGGTTGAATTGGGATTGGGATCATCAAGATAATGGATCAATGGAAGGATGTAGTTTGGATCAATGGGAACTTGAGGAAATTTCATCTTGGGTTATGGGAAACTGA

Coding sequence (CDS)

ATGACACGACTTTCTGCTAAGTCGTCTTCACCCATAACTGGCATCCTTGACATTACTCCTGCATCGAAGCGAAAGCGAAACATTAGCAAAAGTGCCCAACAACAAGCTGCTACTGTCAAAATGAAAACAACTGAGAAAGAAAAAGTAGAAAAAGGGTTGAGCTCGGAAGAGGATGATAAAGAAGATGAAGATGGATTGGGAAATAGTAGAGTAGTATTGAATGATGGAGGTGAAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAATGAGACTGAATAATGAAATTATTGAATGGGGAATGGGGGAGTCAAGAGGCAATAATAACAATGGATGCAATGAGAAAGTGAGATGTACTGAAGATCATAATCATAATTATGGTTCTAATTGTTCTTCTTCAGTGAATTCAGCTTTGGAAATGGATCAATGGTTGAATTGGGATTGGGATCATCAAGATAATGGATCAATGGAAGGATGTAGTTTGGATCAATGGGAACTTGAGGAAATTTCATCTTGGGTTATGGGAAACTGA

Protein sequence

MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDKEDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRCTEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN*

Homology

[Close]

BLAST of Csa3G165680 vs. TrEMBL
Match: A0A0A0LAP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165680 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 4.5e-101
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK 60
           MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK
Sbjct: 1   MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK 60

Query: 61  EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC 120
           EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC
Sbjct: 61  EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC 120

Query: 121 TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN 179
           TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN
Sbjct: 121 TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN 178

[Close]

BLAST of Csa3G165680 vs. NCBI nr
Match: gi|700202018|gb|KGN57151.1| (hypothetical protein Csa_3G165680 [Cucumis sativus])

HSP 1 Score: 375.2 bits (962), Expect = 6.5e-101
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK 60
           MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK
Sbjct: 1   MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK 60

Query: 61  EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC 120
           EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC
Sbjct: 61  EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC 120

Query: 121 TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN 179
           TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN
Sbjct: 121 TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN 178

[Close]

BLAST of Csa3G165680 vs. NCBI nr
Match: gi|449433427|ref|XP_004134499.1| (PREDICTED: myb-related protein 308 [Cucumis sativus])

HSP 1 Score: 375.2 bits (962), Expect = 6.5e-101
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK 60
           MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK
Sbjct: 119 MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK 178

Query: 61  EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC 120
           EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC
Sbjct: 179 EDEDGLGNSRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRC 238

Query: 121 TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN 179
           TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN
Sbjct: 239 TEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWVMGN 296

[Close]

BLAST of Csa3G165680 vs. NCBI nr
Match: gi|659076904|ref|XP_008438925.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB12 [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 1.2e-81
Identity = 151/176 (85.80%), Postives = 166/176 (94.32%), Query Frame = 1


Query: 1   MTRLSAKSSSPITGILDITPASKRKRNISKSAQQQAATVKMKTTEKEKVEKGLSSEEDDK 60
           MTRLSAKSSSP+TGILDITPASKRKRN+ K  QQQ ATVK+KTTEKEKVEKGLSSE+D+K
Sbjct: 119 MTRLSAKSSSPVTGILDITPASKRKRNVRK-GQQQTATVKVKTTEKEKVEKGLSSEDDEK 178

Query: 61  EDEDGLGNSRVVLND-GGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVR 120
           ED+DGLGN++VVL D GGEEDLGPYDWLDGEIMRLNNEIIEWGM ESRGNNNNGCNEKVR
Sbjct: 179 EDQDGLGNNQVVLTDGGGEEDLGPYDWLDGEIMRLNNEIIEWGMVESRGNNNNGCNEKVR 238

Query: 121 CTEDHNHNYGSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWV 176
           C ED+++NYGS CSSSVNSALEMD+WLNW+ DHQDNGSMEGCSLDQWEL+EISSW+
Sbjct: 239 CNEDNHNNYGS-CSSSVNSALEMDKWLNWEKDHQDNGSMEGCSLDQWELDEISSWL 292

The following BLAST results are available for this feature:

BLAST of Csa3G165680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAP1_CUCSA	4.5e-101	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165680 PE=4 SV=1	[more]

BLAST of Csa3G165680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202018\|gb\|KGN57151.1\|	6.5e-101	100.00	hypothetical protein Csa_3G165680 [Cucumis sativus]	[more]
gi\|449433427\|ref\|XP_004134499.1\|	6.5e-101	100.00	PREDICTED: myb-related protein 308 [Cucumis sativus]	[more]
gi\|659076904\|ref\|XP_008438925.1\|	1.2e-81	85.80	PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB12 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G165680.1	Csa3G165680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G165680	Cla021776	Watermelon (97103) v1	cuwmB233
Csa3G165680	Lsi05G015770	Bottle gourd (USVL1VR-Ls)	culsiB199
Csa3G165680	MELO3C006700.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G165680	Cla97C05G088010	Watermelon (97103) v2	cuwmbB204
Csa3G165680	Bhi01G000766	Wax gourd	cuwgoB269
Csa3G165680	CSPI03G14840	Wild cucumber (PI 183967)	cpicuB120
Csa3G165680	Cucsa.252700	Cucumber (Gy14) v1	cgycuB366
Csa3G165680	CmaCh06G015530	Cucurbita maxima (Rimu)	cmacuB814
Csa3G165680	CmaCh00G004270	Cucurbita maxima (Rimu)	cmacuB000
Csa3G165680	CmoCh14G016310	Cucurbita moschata (Rifu)	cmocuB239
Csa3G165680	CmoCh06G015520	Cucurbita moschata (Rifu)	cmocuB806
Csa3G165680	Cp4.1LG08g05230	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G165680	Carg19635	Silver-seed gourd	carcuB0306
Csa3G165680	Carg23744	Silver-seed gourd	carcuB0967

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G165680	Watermelon (97103) v2	cuwmbB231
Csa3G165680	Wax gourd	cuwgoB253
Csa3G165680	Cucumber (Chinese Long) v2	cucuB120
Csa3G165680	Cucumber (Gy14) v1	cgycuB063
Csa3G165680	Cucurbita maxima (Rimu)	cmacuB253
Csa3G165680	Cucurbita maxima (Rimu)	cmacuB355
Csa3G165680	Cucurbita maxima (Rimu)	cmacuB885
Csa3G165680	Cucurbita moschata (Rifu)	cmocuB345
Csa3G165680	Cucurbita moschata (Rifu)	cmocuB872
Csa3G165680	Melon (DHL92) v3.5.1	cumeB180
Csa3G165680	Melon (DHL92) v3.5.1	cumeB236
Csa3G165680	Watermelon (Charleston Gray)	cuwcgB222
Csa3G165680	Watermelon (Charleston Gray)	cuwcgB247
Csa3G165680	Watermelon (97103) v1	cuwmB279
Csa3G165680	Cucurbita pepo (Zucchini)	cpecuB132
Csa3G165680	Cucurbita pepo (Zucchini)	cpecuB307
Csa3G165680	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G165680	Bottle gourd (USVL1VR-Ls)	culsiB150
Csa3G165680	Cucumber (Gy14) v2	cgybcuB109
Csa3G165680	Cucumber (Gy14) v2	cgybcuB263
Csa3G165680	Melon (DHL92) v3.6.1	cumedB165
Csa3G165680	Silver-seed gourd	carcuB0071
Csa3G165680	Silver-seed gourd	carcuB0723