Cp4.1LG08g05230 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g05230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 1051023 .. 1051427 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATCCTCGACATCATTCCCGCACCCAAACGAAGGAAAAACACGACCGATCGAGCAAGTCGACAACAAACGAACGCAATCGAAGGGAAGACAATCCCTCCCCATATAGAGAAAGAGGAAAAAGAAGAAGGGTTGAGCTCAAAAGATAGTAAAGAAGGAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAGAGAGACTCAATAATGATCCTGAATGGATTAAAAGCAATGAGAAAATGGCATTTGAAGATGATGTTCAAAATGGGGAGAGGTCTTCTTCTTCCTCCATCAACTCAGCTTTAGAAATGGATCAATGGCTCAACTTTGATTGGGAGCTTCACAAGATTTCTTCTTGGTTATGGGAAACCGAGATCGATCGATGTATTGAGAGTTAG

mRNA sequence

ATGGGCATCCTCGACATCATTCCCGCACCCAAACGAAGGAAAAACACGACCGATCGAGCAAGTCGACAACAAACGAACGCAATCGAAGGGAAGACAATCCCTCCCCATATAGAGAAAGAGGAAAAAGAAGAAGGGTTGAGCTCAAAAGATAGTAAAGAAGGAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAGAGAGACTCAATAATGATCCTGAATGGATTAAAAGCAATGAGAAAATGGCATTTGAAGATGATGTTCAAAATGGGGAGAGGTCTTCTTCTTCCTCCATCAACTCAGCTTTAGAAATGGATCAATGGCTCAACTTTGATTGGGAGCTTCACAAGATTTCTTCTTGGTTATGGGAAACCGAGATCGATCGATGTATTGAGAGTTAG

Coding sequence (CDS)

ATGGGCATCCTCGACATCATTCCCGCACCCAAACGAAGGAAAAACACGACCGATCGAGCAAGTCGACAACAAACGAACGCAATCGAAGGGAAGACAATCCCTCCCCATATAGAGAAAGAGGAAAAAGAAGAAGGGTTGAGCTCAAAAGATAGTAAAGAAGGAGAGGACTTGGGACCATATGATTGGCTAGATGGTGAAATAGAGAGACTCAATAATGATCCTGAATGGATTAAAAGCAATGAGAAAATGGCATTTGAAGATGATGTTCAAAATGGGGAGAGGTCTTCTTCTTCCTCCATCAACTCAGCTTTAGAAATGGATCAATGGCTCAACTTTGATTGGGAGCTTCACAAGATTTCTTCTTGGTTATGGGAAACCGAGATCGATCGATGTATTGAGAGTTAG

Protein sequence

MGILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEGEDLGPYDWLDGEIERLNNDPEWIKSNEKMAFEDDVQNGERSSSSSINSALEMDQWLNFDWELHKISSWLWETEIDRCIES
BLAST of Cp4.1LG08g05230 vs. TrEMBL
Match: A0A0A0LAP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165680 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.5e-16
Identity = 72/167 (43.11%), Postives = 91/167 (54.49%), Query Frame = 1

Query: 2   GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSK-DSKEGED---- 61
           GILDI PA KR++N + ++++QQ   ++ KT     EKE+ E+GLSS+ D KE ED    
Sbjct: 14  GILDITPASKRKRNIS-KSAQQQAATVKMKTT----EKEKVEKGLSSEEDDKEDEDGLGN 73

Query: 62  ------------LGPYDWLDGEIERLNNDP-EWIKS----------NEKM-AFEDDVQNG 121
                       LGPYDWLDGEI RLNN+  EW             NEK+   ED   N 
Sbjct: 74  SRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRCTEDHNHNY 133

Query: 122 ERSSSSSINSALEMDQWLNFD----------------WELHKISSWL 124
             + SSS+NSALEMDQWLN+D                WEL +ISSW+
Sbjct: 134 GSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWV 175

BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match: gi|659076904|ref|XP_008438925.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB12 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 80/178 (44.94%), Postives = 102/178 (57.30%), Query Frame = 1

Query: 2   GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSKDSKEG------- 61
           GILDI PA KR++N   R  +QQT  ++ KT     EKE+ E+GLSS+D ++        
Sbjct: 132 GILDITPASKRKRNV--RKGQQQTATVKVKTT----EKEKVEKGLSSEDDEKEDQDGLGN 191

Query: 62  -----------EDLGPYDWLDGEIERLNNDP-EW--IKS--------NEKMAFEDDVQNG 121
                      EDLGPYDWLDGEI RLNN+  EW  ++S        NEK+   +D  N 
Sbjct: 192 NQVVLTDGGGEEDLGPYDWLDGEIMRLNNEIIEWGMVESRGNNNNGCNEKVRCNEDNHNN 251

Query: 122 ERSSSSSINSALEMDQWLNFD----------------WELHKISSWLWETEIDRCIES 135
             S SSS+NSALEMD+WLN++                WEL +ISSWLWETEID+C +S
Sbjct: 252 YGSCSSSVNSALEMDKWLNWEKDHQDNGSMEGCSLDQWELDEISSWLWETEIDQCFDS 303

BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match: gi|449433427|ref|XP_004134499.1| (PREDICTED: myb-related protein 308 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 72/167 (43.11%), Postives = 91/167 (54.49%), Query Frame = 1

Query: 2   GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSK-DSKEGED---- 61
           GILDI PA KR++N + ++++QQ   ++ KT     EKE+ E+GLSS+ D KE ED    
Sbjct: 132 GILDITPASKRKRNIS-KSAQQQAATVKMKTT----EKEKVEKGLSSEEDDKEDEDGLGN 191

Query: 62  ------------LGPYDWLDGEIERLNNDP-EWIKS----------NEKM-AFEDDVQNG 121
                       LGPYDWLDGEI RLNN+  EW             NEK+   ED   N 
Sbjct: 192 SRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRCTEDHNHNY 251

Query: 122 ERSSSSSINSALEMDQWLNFD----------------WELHKISSWL 124
             + SSS+NSALEMDQWLN+D                WEL +ISSW+
Sbjct: 252 GSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWV 293

BLAST of Cp4.1LG08g05230 vs. NCBI nr
Match: gi|700202018|gb|KGN57151.1| (hypothetical protein Csa_3G165680 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 72/167 (43.11%), Postives = 91/167 (54.49%), Query Frame = 1

Query: 2   GILDIIPAPKRRKNTTDRASRQQTNAIEGKTIPPHIEKEEKEEGLSSK-DSKEGED---- 61
           GILDI PA KR++N + ++++QQ   ++ KT     EKE+ E+GLSS+ D KE ED    
Sbjct: 14  GILDITPASKRKRNIS-KSAQQQAATVKMKTT----EKEKVEKGLSSEEDDKEDEDGLGN 73

Query: 62  ------------LGPYDWLDGEIERLNNDP-EWIKS----------NEKM-AFEDDVQNG 121
                       LGPYDWLDGEI RLNN+  EW             NEK+   ED   N 
Sbjct: 74  SRVVLNDGGEEDLGPYDWLDGEIMRLNNEIIEWGMGESRGNNNNGCNEKVRCTEDHNHNY 133

Query: 122 ERSSSSSINSALEMDQWLNFD----------------WELHKISSWL 124
             + SSS+NSALEMDQWLN+D                WEL +ISSW+
Sbjct: 134 GSNCSSSVNSALEMDQWLNWDWDHQDNGSMEGCSLDQWELEEISSWV 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LAP1_CUCSA7.5e-1643.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659076904|ref|XP_008438925.1|1.4e-2344.94PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB12 [Cucumis melo][more]
gi|449433427|ref|XP_004134499.1|1.1e-1543.11PREDICTED: myb-related protein 308 [Cucumis sativus][more]
gi|700202018|gb|KGN57151.1|1.1e-1543.11hypothetical protein Csa_3G165680 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05230.1Cp4.1LG08g05230.1mRNA


The following gene(s) are paralogous to this gene:

None