Csa3G134000 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G134000
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 8871998 .. 8872267 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAAATCATGGCTCTTCTTGAAGAACAACATGACAAAAACAACAATAAATCAGAAACTTTATCTTCATCTTCTGCATCAGAGGCAGAGAAGAAACAAAGCATCTCAAATTTCTACACACAGACAACTGATAATAATGAGCAAAGTTTGACATCTGAGCTGATCAACAACAATGTCTTTGTACTGCCTGAAATGTTGAGTGAAGGGCTTGATGTGGGATGGGCCATGGAGCTTGGAGGATATAATCCATGGCAATGGCAGCCTTAG

mRNA sequence

ATGAACAAAATCATGGCTCTTCTTGAAGAACAACATGACAAAAACAACAATAAATCAGAAACTTTATCTTCATCTTCTGCATCAGAGGCAGAGAAGAAACAAAGCATCTCAAATTTCTACACACAGACAACTGATAATAATGAGCAAAGTTTGACATCTGAGCTGATCAACAACAATGTCTTTGTACTGCCTGAAATGTTGAGTGAAGGGCTTGATGTGGGATGGGCCATGGAGCTTGGAGGATATAATCCATGGCAATGGCAGCCTTAG

Coding sequence (CDS)

ATGAACAAAATCATGGCTCTTCTTGAAGAACAACATGACAAAAACAACAATAAATCAGAAACTTTATCTTCATCTTCTGCATCAGAGGCAGAGAAGAAACAAAGCATCTCAAATTTCTACACACAGACAACTGATAATAATGAGCAAAGTTTGACATCTGAGCTGATCAACAACAATGTCTTTGTACTGCCTGAAATGTTGAGTGAAGGGCTTGATGTGGGATGGGCCATGGAGCTTGGAGGATATAATCCATGGCAATGGCAGCCTTAG

Protein sequence

MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNVFVLPEMLSEGLDVGWAMELGGYNPWQWQP*

Homology

[Close]

BLAST of Csa3G134000 vs. TrEMBL
Match: A0A0A0L484_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134000 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.5e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60
          MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV
Sbjct: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60

Query: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
          FVLPEMLSEGLDVGWAMELGGYNPWQWQP
Sbjct: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 89

[Close]

BLAST of Csa3G134000 vs. NCBI nr
Match: gi|778688452|ref|XP_004134395.2| (PREDICTED: transcription factor MYB24-like [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60
           MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV
Sbjct: 164 MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 223

Query: 61  FVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
           FVLPEMLSEGLDVGWAMELGGYNPWQWQP
Sbjct: 224 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 252

[Close]

BLAST of Csa3G134000 vs. NCBI nr
Match: gi|700201667|gb|KGN56800.1| (hypothetical protein Csa_3G134000 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60
          MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV
Sbjct: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60

Query: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
          FVLPEMLSEGLDVGWAMELGGYNPWQWQP
Sbjct: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 89

[Close]

BLAST of Csa3G134000 vs. NCBI nr
Match: gi|659075993|ref|XP_008438441.1| (PREDICTED: transcription factor MYB24-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1


Query: 1   MNKIMALLEEQHDKNNNKSETL-SSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNN 60
           MNKIMALLEEQHD  NNK ETL SSSSASEAEKKQ+I+NFYTQTTD NEQSL SEL NNN
Sbjct: 210 MNKIMALLEEQHDDKNNKLETLSSSSSASEAEKKQNITNFYTQTTD-NEQSLISEL-NNN 269

Query: 61  VFVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
            FVLPEML+EGLDVGWAMELGGY PWQWQP
Sbjct: 270 GFVLPEMLNEGLDVGWAMELGGY-PWQWQP 296

The following BLAST results are available for this feature:

BLAST of Csa3G134000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L484_CUCSA	7.5e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134000 PE=4 SV=1	[more]

BLAST of Csa3G134000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688452\|ref\|XP_004134395.2\|	1.1e-43	100.00	PREDICTED: transcription factor MYB24-like [Cucumis sativus]	[more]
gi\|700201667\|gb\|KGN56800.1\|	1.1e-43	100.00	hypothetical protein Csa_3G134000 [Cucumis sativus]	[more]
gi\|659075993\|ref\|XP_008438441.1\|	1.2e-31	86.67	PREDICTED: transcription factor MYB24-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G134000.1	Csa3G134000.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G134000	Cla021474	Watermelon (97103) v1	cuwmB233
Csa3G134000	MELO3C006366	Melon (DHL92) v3.5.1	cumeB236
Csa3G134000	ClCG05G003890	Watermelon (Charleston Gray)	cuwcgB222
Csa3G134000	Lsi05G017800	Bottle gourd (USVL1VR-Ls)	culsiB209
Csa3G134000	MELO3C006366.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G134000	Cla97C05G084530	Watermelon (97103) v2	cuwmbB204
Csa3G134000	Bhi01G000479	Wax gourd	cuwgoB293
Csa3G134000	CSPI03G11470	Wild cucumber (PI 183967)	cpicuB120
Csa3G134000	Cucsa.255900	Cucumber (Gy14) v1	cgycuB366
Csa3G134000	CmaCh14G018520	Cucurbita maxima (Rimu)	cmacuB253
Csa3G134000	CmoCh14G018970	Cucurbita moschata (Rifu)	cmocuB239
Csa3G134000	Cp4.1LG03g09700	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G134000	CsGy3G011530	Cucumber (Gy14) v2	cgybcuB109
Csa3G134000	Carg16528	Silver-seed gourd	carcuB0262

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G134000	Cucurbita pepo (Zucchini)	cpecuB724
Csa3G134000	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G134000	Bottle gourd (USVL1VR-Ls)	culsiB150
Csa3G134000	Bottle gourd (USVL1VR-Ls)	culsiB215
Csa3G134000	Cucumber (Gy14) v2	cgybcuB065
Csa3G134000	Cucumber (Gy14) v2	cgybcuB122
Csa3G134000	Melon (DHL92) v3.6.1	cumedB171
Csa3G134000	Melon (DHL92) v3.6.1	cumedB205
Csa3G134000	Melon (DHL92) v3.6.1	cumedB220
Csa3G134000	Silver-seed gourd	carcuB0256
Csa3G134000	Silver-seed gourd	carcuB0795
Csa3G134000	Silver-seed gourd	carcuB0975
Csa3G134000	Silver-seed gourd	carcuB1093
Csa3G134000	Watermelon (97103) v2	cuwmbB231
Csa3G134000	Watermelon (97103) v2	cuwmbB241
Csa3G134000	Wax gourd	cuwgoB251
Csa3G134000	Wax gourd	cuwgoB303
Csa3G134000	Cucumber (Chinese Long) v2	cucuB050
Csa3G134000	Cucumber (Chinese Long) v2	cucuB090
Csa3G134000	Cucumber (Chinese Long) v2	cucuB118
Csa3G134000	Cucumber (Gy14) v1	cgycuB203
Csa3G134000	Cucumber (Gy14) v1	cgycuB489
Csa3G134000	Cucumber (Gy14) v1	cgycuB537
Csa3G134000	Cucurbita maxima (Rimu)	cmacuB356
Csa3G134000	Cucurbita maxima (Rimu)	cmacuB597
Csa3G134000	Cucurbita maxima (Rimu)	cmacuB814
Csa3G134000	Cucurbita maxima (Rimu)	cmacuB885
Csa3G134000	Cucurbita moschata (Rifu)	cmocuB346
Csa3G134000	Cucurbita moschata (Rifu)	cmocuB585
Csa3G134000	Cucurbita moschata (Rifu)	cmocuB806
Csa3G134000	Cucurbita moschata (Rifu)	cmocuB872
Csa3G134000	Melon (DHL92) v3.5.1	cumeB219
Csa3G134000	Melon (DHL92) v3.5.1	cumeB231
Csa3G134000	Watermelon (Charleston Gray)	cuwcgB245
Csa3G134000	Watermelon (Charleston Gray)	cuwcgB246
Csa3G134000	Watermelon (Charleston Gray)	cuwcgB255
Csa3G134000	Watermelon (97103) v1	cuwmB221
Csa3G134000	Watermelon (97103) v1	cuwmB279
Csa3G134000	Cucurbita pepo (Zucchini)	cpecuB134
Csa3G134000	Cucurbita pepo (Zucchini)	cpecuB310