Csa3G134000.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G134000.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 8871998 .. 8872267 (-)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAAATCATGGCTCTTCTTGAAGAACAACATGACAAAAACAACAATAAATCAGAAACTTTATCTTCATCTTCTGCATCAGAGGCAGAGAAGAAACAAAGCATCTCAAATTTCTACACACAGACAACTGATAATAATGAGCAAAGTTTGACATCTGAGCTGATCAACAACAATGTCTTTGTACTGCCTGAAATGTTGAGTGAAGGGCTTGATGTGGGATGGGCCATGGAGCTTGGAGGATATAATCCATGGCAATGGCAGCCTTAG

mRNA sequence

ATGAACAAAATCATGGCTCTTCTTGAAGAACAACATGACAAAAACAACAATAAATCAGAAACTTTATCTTCATCTTCTGCATCAGAGGCAGAGAAGAAACAAAGCATCTCAAATTTCTACACACAGACAACTGATAATAATGAGCAAAGTTTGACATCTGAGCTGATCAACAACAATGTCTTTGTACTGCCTGAAATGTTGAGTGAAGGGCTTGATGTGGGATGGGCCATGGAGCTTGGAGGATATAATCCATGGCAATGGCAGCCTTAG

Coding sequence (CDS)

ATGAACAAAATCATGGCTCTTCTTGAAGAACAACATGACAAAAACAACAATAAATCAGAAACTTTATCTTCATCTTCTGCATCAGAGGCAGAGAAGAAACAAAGCATCTCAAATTTCTACACACAGACAACTGATAATAATGAGCAAAGTTTGACATCTGAGCTGATCAACAACAATGTCTTTGTACTGCCTGAAATGTTGAGTGAAGGGCTTGATGTGGGATGGGCCATGGAGCTTGGAGGATATAATCCATGGCAATGGCAGCCTTAG

Protein sequence

MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNVFVLPEMLSEGLDVGWAMELGGYNPWQWQP*

Homology

[Close]

BLAST of Csa3G134000.1 vs. TrEMBL
Match: A0A0A0L484_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134000 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.5e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60
          MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV
Sbjct: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60

Query: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
          FVLPEMLSEGLDVGWAMELGGYNPWQWQP
Sbjct: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 89

[Close]

BLAST of Csa3G134000.1 vs. NCBI nr
Match: gi|778688452|ref|XP_004134395.2| (PREDICTED: transcription factor MYB24-like [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60
           MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV
Sbjct: 164 MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 223

Query: 61  FVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
           FVLPEMLSEGLDVGWAMELGGYNPWQWQP
Sbjct: 224 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 252

[Close]

BLAST of Csa3G134000.1 vs. NCBI nr
Match: gi|700201667|gb|KGN56800.1| (hypothetical protein Csa_3G134000 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60
          MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV
Sbjct: 1  MNKIMALLEEQHDKNNNKSETLSSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNNV 60

Query: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
          FVLPEMLSEGLDVGWAMELGGYNPWQWQP
Sbjct: 61 FVLPEMLSEGLDVGWAMELGGYNPWQWQP 89

[Close]

BLAST of Csa3G134000.1 vs. NCBI nr
Match: gi|659075993|ref|XP_008438441.1| (PREDICTED: transcription factor MYB24-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1


Query: 1   MNKIMALLEEQHDKNNNKSETL-SSSSASEAEKKQSISNFYTQTTDNNEQSLTSELINNN 60
           MNKIMALLEEQHD  NNK ETL SSSSASEAEKKQ+I+NFYTQTTD NEQSL SEL NNN
Sbjct: 210 MNKIMALLEEQHDDKNNKLETLSSSSSASEAEKKQNITNFYTQTTD-NEQSLISEL-NNN 269

Query: 61  VFVLPEMLSEGLDVGWAMELGGYNPWQWQP 90
            FVLPEML+EGLDVGWAMELGGY PWQWQP
Sbjct: 270 GFVLPEMLNEGLDVGWAMELGGY-PWQWQP 296

The following BLAST results are available for this feature:

BLAST of Csa3G134000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L484_CUCSA	7.5e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134000 PE=4 SV=1	[more]

BLAST of Csa3G134000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688452\|ref\|XP_004134395.2\|	1.1e-43	100.00	PREDICTED: transcription factor MYB24-like [Cucumis sativus]	[more]
gi\|700201667\|gb\|KGN56800.1\|	1.1e-43	100.00	hypothetical protein Csa_3G134000 [Cucumis sativus]	[more]
gi\|659075993\|ref\|XP_008438441.1\|	1.2e-31	86.67	PREDICTED: transcription factor MYB24-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G134000	Csa3G134000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa3G134000.1	Csa3G134000.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G134000.1.cds1	Csa3G134000.1.cds1	CDS