Csa3G127160 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G127160
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8022100 .. 8022385 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCCAATACACGCCAATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTCTCTGCTTAGAATGTGTTCGACAAAATGCCTCAAATTAA

mRNA sequence

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTCTCTGCTTAGAATGTGTTCGACAAAATGCCTCAAATTAA

Coding sequence (CDS)

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTCTCTGCTTAGAATGTGTTCGACAAAATGCCTCAAATTAA

Protein sequence

MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTINCREASERELDSLLFSETLCLECVRQNASN*
Homology
[Close]
BLAST of Csa3G127160 vs. TrEMBL
Match: A0A0A0L4H2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127160 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.3e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60
          MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60

Query: 61 CREASERELDSLLFSETLCLECVRQNASN 90
          CREASERELDSLLFSETLCLECVRQNASN
Sbjct: 61 CREASERELDSLLFSETLCLECVRQNASN 89

[Close]
BLAST of Csa3G127160 vs. NCBI nr
Match: gi|700201520|gb|KGN56653.1| (hypothetical protein Csa_3G127160 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 9.1e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60
          MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60

Query: 61 CREASERELDSLLFSETLCLECVRQNASN 90
          CREASERELDSLLFSETLCLECVRQNASN
Sbjct: 61 CREASERELDSLLFSETLCLECVRQNASN 89

The following BLAST results are available for this feature:
BLAST of Csa3G127160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4H2_CUCSA6.3e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G127160 PE=4 SV=1[more]
BLAST of Csa3G127160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201520|gb|KGN56653.1|9.1e-43100.00hypothetical protein Csa_3G127160 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G127160.1Csa3G127160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G127160MELO3C006240Melon (DHL92) v3.5.1cumeB236
Csa3G127160MELO3C006240.2Melon (DHL92) v3.6.1cumedB223
Csa3G127160CSPI03G10050Wild cucumber (PI 183967)cpicuB120
Csa3G127160CsGy3G010150Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G127160Cucumber (Chinese Long) v2cucuB088
Csa3G127160Cucumber (Chinese Long) v2cucuB089
Csa3G127160Cucumber (Chinese Long) v2cucuB111
Csa3G127160Cucumber (Gy14) v1cgycuB366
Csa3G127160Cucumber (Gy14) v1cgycuB460
Csa3G127160Cucumber (Gy14) v1cgycuB509
Csa3G127160Cucurbita maxima (Rimu)cmacuB253
Csa3G127160Cucurbita maxima (Rimu)cmacuB357
Csa3G127160Cucurbita maxima (Rimu)cmacuB822
Csa3G127160Cucurbita maxima (Rimu)cmacuB814
Csa3G127160Cucurbita maxima (Rimu)cmacuB892
Csa3G127160Cucurbita moschata (Rifu)cmocuB239
Csa3G127160Cucurbita moschata (Rifu)cmocuB348
Csa3G127160Cucurbita moschata (Rifu)cmocuB806
Csa3G127160Cucurbita moschata (Rifu)cmocuB878
Csa3G127160Melon (DHL92) v3.5.1cumeB182
Csa3G127160Watermelon (Charleston Gray)cuwcgB181
Csa3G127160Watermelon (Charleston Gray)cuwcgB222
Csa3G127160Watermelon (Charleston Gray)cuwcgB242
Csa3G127160Watermelon (97103) v1cuwmB187
Csa3G127160Watermelon (97103) v1cuwmB207
Csa3G127160Watermelon (97103) v1cuwmB233
Csa3G127160Watermelon (97103) v1cuwmB276
Csa3G127160Cucurbita pepo (Zucchini)cpecuB135
Csa3G127160Cucurbita pepo (Zucchini)cpecuB309
Csa3G127160Cucurbita pepo (Zucchini)cpecuB609
Csa3G127160Cucurbita pepo (Zucchini)cpecuB859
Csa3G127160Bottle gourd (USVL1VR-Ls)culsiB154
Csa3G127160Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G127160Bottle gourd (USVL1VR-Ls)culsiB223
Csa3G127160Bottle gourd (USVL1VR-Ls)culsiB232
Csa3G127160Cucumber (Gy14) v2cgybcuB114
Csa3G127160Cucumber (Gy14) v2cgybcuB116
Csa3G127160Cucumber (Gy14) v2cgybcuB256
Csa3G127160Melon (DHL92) v3.6.1cumedB167
Csa3G127160Silver-seed gourdcarcuB0257
Csa3G127160Silver-seed gourdcarcuB0644
Csa3G127160Silver-seed gourdcarcuB0975
Csa3G127160Silver-seed gourdcarcuB1091
Csa3G127160Watermelon (97103) v2cuwmbB204
Csa3G127160Watermelon (97103) v2cuwmbB185
Csa3G127160Watermelon (97103) v2cuwmbB227
Csa3G127160Wax gourdcuwgoB259
Csa3G127160Wax gourdcuwgoB270