Csa3G006600 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATGGTATTTTGGGGCAATTCGTTAAGTTTGAGAAGGTGGAACCGACCGGAATCAGATCCTCACCTTGCCGCCATCGTCAACGCCACGTTCAAGCACTCTCTCCTTCTCTCTCTCTCCCTTCCTTTGCGCCAAACCCTTTTTCGGGGACCGCAAAAGGGCTGATTTTTCTGCAACAAACACTCCCTCGCATGGTGGGATCGACTACTCTTAATCACCTTATTATGCAATCGTCAGTGCTTTCCACTTATCATTACCAATCCATTATTCCATCATTTTCCGTTTACTCATCTTCTTTTTCCATTTCCACTTAATTTTTATCATCACAATTACGAAATCTGTTTCCTCTTTTTTGTTTCTACTTTTTCCATAGCTGCCGTGTTATTTGAGCTGCTCGATTTTATTTTGTTCTACTTTTGGTTGTTTTGTTTCACCTGTGGATCTTTTTTTTTTTTTTTTCGTTTTTATTCATCATTGCGATATTGGTTGTTGCTTTCAATTGTTCGATTTTGACCAAAGAAGTGGAAGACCAACGATCTTTTTTTAAGAAGAATCGATTTCTAAAGCGTTTCTTATTTTGCCTTCAAACAATAGGTTTCTTTGTCTTCTTCCTAAATTACTAGCTTCAATAATGCTCTTCTTTTTACGCTCTGTGTTCTTGCTGTGGTTTGCGAGAATTATTGGTACTTTTGCTTGTTTTCACGAAGCATTTCACGAATTATTCAGAAGAGTTGAGGAAGTTCCTGTGTTGATTTACTGAATGGAAGTGTTTTTTTTGGGGGGGAAAACAGAATTTGGCTTAATGGTAGAAGAGGAGAAGTTATCATAAAAGTGAAGATCACGGAGGAATAGAGTGGTAAAAGCGATTTGAAGATATGGGATCTTTTAAGGGCCATGTTCTTCCAGGAACGCTGTTTCTTCTGGTTGGTGTTTGGCACGTGTGGAGTGCTCTGCTTCGGTACGTGTTAAATCCTAGCTTGTTTCGTGTTCGTGTGTGGAATCCTATGCCTGGCTTCGACGGAAAACTCAAATACTTAGAGCTTTATGTTATTGTTATTGGCGGTTTCATTGATTTGTGTATTGAGCTTTTGTATTCAACCCATCTCAAGTTCTTCGTTAATGGAGTTTTGAACCCTTCACATATGAACAACTTTGAACATTCGGGGATGCTTCTCATGTTCTTCATTTTTGGAGTCATCGCTTTGCTCTCTGAAAAATCCAGGTAATTCATTCTTGTTTCATGAACAAATCATTTGAGAGTGTTAACTTTTTCATTACTTTTGTTTAGATCAGTTGGGTTTAGTTAATTCAGTTACTTTGCTTGAGTTAGTTTTGAGAAGTATTTTTGAAAACGTGCATAACAAATTAAACAGACTATAACTTAGTTTTTGAGTTGAGTGGTGGGTTTAATAGAAATATCAAATTGATGGTGGAAAGTATGAGGATTTTCTTTTAAGGAGGAGTTTAAGCCGGCAAGGACGAGTAAACATGGCGTGTATAGATGTATCTTTGCTGAATTGGTTGAATAAAAGTACACGAACTTTTGCTCTTGATCTTGTAGTAGTTTGTTTACATCAGGAAAGTGAATAAGTGATCATAGATTCAAGATGAAGATATCATGGTTTAGGTCTGTGAAGGATCAGTGTAGCTTTCGTTCTGTTTTCATACAATCAACTTCACATATTAGTAAAGTAACGCATGCATGTGGAGCAATTGATATGAAGATATAGCCTACAGATCATATAAGATGGAAGTTCTGGGATGAGAGCAATAGCAATTTCTATCACATCATATTTTAAGTTGTGACCGTTCCCAAACCTCGTTGGAACGACACGTTTTTCGTCCCTGGTTTCTAGTATTTTTCAGTTCATAAGAGATTATCATCCAGAATTTGAAGTGAAATGTGGACAAATAAATGGTTATACTGTATAGAAGGGGACATGTCTAATTTGCATAATCTTTTAATCTAGTATTCAAATATTGAATTGAGTTGTTAACTATCTGTTTCTAAATTTATGTGCAGTTTATCTTTTACTGTTTTAAATTTTAATTACTAGTTTTTTTCTTAAAAAGAGCTGATTATTCAACTCTCACCTCTTTCTGTTTAGATTTGTTCGTCTACCAGACGAAGCGCTTTGTCTGATTGCTGCCATGGCATTCTGCGCCGAATATCTGTTGTTTTACTTTCATTCAACTACTCATAAAGGCCTCGAGGGTTACTACCATATTCTCCTTGTCCTCTTGATAGGGCTCTGCATTTTGTCGACGGTTGCTGGAGCTATTTTACCTACCAGCTTTTCAGTTGACGTGTGCAGCGGTATCGCCATAACGCTCCAGGGTCTTTGGTTTTATCAAACAGCCTTCACTTTGTATGGTCCAATGATGCCTGATGGTTGTGAGCTAAAGGATGATATGATGGTCATGTGTTATTCAAAAGATAGTGAGGTTAGAGGTGAACTCCTTGCAAATTTCCAGCTCTTTTCTATGGTCGTTGGAGTCCTTGGTGGGGTCATCGGAGTTTACTGGTTTGCAGCATCGAAGTACGGGCGATCCGACCTCGGAAGTTCGAATGCCATCCAAGACTAGATTGTTTCCGGGTATGTCTTGCATCAAAATTTTATCTCTTTGTAGGATTCTTTAGGCAACTTCTAGGTTTGTTTCTTACATTCTAAAAAGTAAAACTTCTTTAGCTTCATTTAGAAATCCATGCCACGATTATGATTTCGAGTGCTGCTTAACATTCTATTTTTTGTTATTATTTTTAAAACTTGAATGCTTTGTGGGTAAACAATTCCAAAGTGCATTTGGCTCGAGTGCTTTGACTTAAAAGCACTTTAAAAATTTTCTTAAGAAGGTAAAATCAACCATCATATGATTTTTTTATCGAACGCTTTCTATTTATTTGTTTATCATTAAAATACTTTTGACTACAATATTAAAATACTTTGATTACAATATTTTGATAGAGTGATTTTAAAAATGATTGAAATCATTTTCTCAAAAGTTCAACATTCAAAATCAATTTAATGAATAATTTTACACTTTAAACAAATTTTTTATACTATTAAAATTGATTTAGAATGACTAAAAACATTTTCCTATTCATTTTAAAAATGACAAAGATGATTGTAACGTCTAAGACGTCCCATGATCTCTCACACACACGTATATTTTCTGATTAAACTCGTTCAAGCTATTAATTTTTCTTTTCAATTTTAATGTAATTAAAAGTTTTAGACTGAAGAATGATTCATTGGAAATTTTTAAAAGAAACTAAAAAGAAAAAGGGAAAAGGGAAATGAAGAGATGGAGAAGAAAAGTGATGTTGTATTTGTGTGTCCTTTTACAGGTCACTTTGTAATATTTTGAGGCAAATAGTTCTTTCTGCTCTCCAATGACTTTGCAGTATATTGTTGCTTAAGTTCTTTTTGTGTAATCATGTGTCAATGGCAAACATAGTCTATGGTTTTATTCTTTTGGGGACTGATTGGAAACTATAGTTTCTTTTCGAAATTTTCAAATAACATTTATCATAATAGTGACATTAAAAAATATTTGAGATGCTCATCATGAGCATAGCTAAGGA ATGGGATCTTTTAAGGGCCATGTTCTTCCAGGAACGCTGTTTCTTCTGGTTGGTGTTTGGCACGTGTGGAGTGCTCTGCTTCGGTACGTGTTAAATCCTAGCTTGTTTCGTGTTCGTGTGTGGAATCCTATGCCTGGCTTCGACGGAAAACTCAAATACTTAGAGCTTTATGTTATTGTTATTGGCGGTTTCATTGATTTGTGTATTGAGCTTTTGTATTCAACCCATCTCAAGTTCTTCGTTAATGGAGTTTTGAACCCTTCACATATGAACAACTTTGAACATTCGGGGATGCTTCTCATGTTCTTCATTTTTGGAGTCATCGCTTTGCTCTCTGAAAAATCCAGATTTGTTCGTCTACCAGACGAAGCGCTTTGTCTGATTGCTGCCATGGCATTCTGCGCCGAATATCTGTTGTTTTACTTTCATTCAACTACTCATAAAGGCCTCGAGGGTTACTACCATATTCTCCTTGTCCTCTTGATAGGGCTCTGCATTTTGTCGACGGTTGCTGGAGCTATTTTACCTACCAGCTTTTCAGTTGACGTGTGCAGCGGTATCGCCATAACGCTCCAGGGTCTTTGGTTTTATCAAACAGCCTTCACTTTGTATGGTCCAATGATGCCTGATGGTTGTGAGCTAAAGGATGATATGATGGTCATGTGTTATTCAAAAGATAGTGAGGTTAGAGGTGAACTCCTTGCAAATTTCCAGCTCTTTTCTATGGTCGTTGGAGTCCTTGGTGGGGTCATCGGAGTTTACTGGTTTGCAGCATCGAAGTACGGGCGATCCGACCTCGGAAGTTCGAATGCCATCCAAGACTAG ATGGGATCTTTTAAGGGCCATGTTCTTCCAGGAACGCTGTTTCTTCTGGTTGGTGTTTGGCACGTGTGGAGTGCTCTGCTTCGGTACGTGTTAAATCCTAGCTTGTTTCGTGTTCGTGTGTGGAATCCTATGCCTGGCTTCGACGGAAAACTCAAATACTTAGAGCTTTATGTTATTGTTATTGGCGGTTTCATTGATTTGTGTATTGAGCTTTTGTATTCAACCCATCTCAAGTTCTTCGTTAATGGAGTTTTGAACCCTTCACATATGAACAACTTTGAACATTCGGGGATGCTTCTCATGTTCTTCATTTTTGGAGTCATCGCTTTGCTCTCTGAAAAATCCAGATTTGTTCGTCTACCAGACGAAGCGCTTTGTCTGATTGCTGCCATGGCATTCTGCGCCGAATATCTGTTGTTTTACTTTCATTCAACTACTCATAAAGGCCTCGAGGGTTACTACCATATTCTCCTTGTCCTCTTGATAGGGCTCTGCATTTTGTCGACGGTTGCTGGAGCTATTTTACCTACCAGCTTTTCAGTTGACGTGTGCAGCGGTATCGCCATAACGCTCCAGGGTCTTTGGTTTTATCAAACAGCCTTCACTTTGTATGGTCCAATGATGCCTGATGGTTGTGAGCTAAAGGATGATATGATGGTCATGTGTTATTCAAAAGATAGTGAGGTTAGAGGTGAACTCCTTGCAAATTTCCAGCTCTTTTCTATGGTCGTTGGAGTCCTTGGTGGGGTCATCGGAGTTTACTGGTTTGCAGCATCGAAGTACGGGCGATCCGACCTCGGAAGTTCGAATGCCATCCAAGACTAG MGSFKGHVLPGTLFLLVGVWHVWSALLRYVLNPSLFRVRVWNPMPGFDGKLKYLELYVIVIGGFIDLCIELLYSTHLKFFVNGVLNPSHMNNFEHSGMLLMFFIFGVIALLSEKSRFVRLPDEALCLIAAMAFCAEYLLFYFHSTTHKGLEGYYHILLVLLIGLCILSTVAGAILPTSFSVDVCSGIAITLQGLWFYQTAFTLYGPMMPDGCELKDDMMVMCYSKDSEVRGELLANFQLFSMVVGVLGGVIGVYWFAASKYGRSDLGSSNAIQD*
BLAST of Csa3G006600 vs. Swiss-Prot
Match: TM45B_DANRE (Transmembrane protein 45B OS=Danio rerio GN=tmem45b PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 7.1e-14 Identity = 63/230 (27.39%), Postives = 100/230 (43.48%), Query Frame = 1
BLAST of Csa3G006600 vs. Swiss-Prot
Match: TM45B_BOVIN (Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 9.3e-14 Identity = 60/211 (28.44%), Postives = 99/211 (46.92%), Query Frame = 1
BLAST of Csa3G006600 vs. Swiss-Prot
Match: TM45B_RAT (Transmembrane protein 45B OS=Rattus norvegicus GN=Tmem45b PE=1 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12 Identity = 63/228 (27.63%), Postives = 99/228 (43.42%), Query Frame = 1
BLAST of Csa3G006600 vs. Swiss-Prot
Match: TM45A_HUMAN (Transmembrane protein 45A OS=Homo sapiens GN=TMEM45A PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.9e-12 Identity = 57/218 (26.15%), Postives = 94/218 (43.12%), Query Frame = 1
BLAST of Csa3G006600 vs. Swiss-Prot
Match: TM45B_XENLA (Transmembrane protein 45B OS=Xenopus laevis GN=tmem45b PE=2 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 6.6e-12 Identity = 60/208 (28.85%), Postives = 95/208 (45.67%), Query Frame = 1
BLAST of Csa3G006600 vs. TrEMBL
Match: A0A0A0L1Q5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006600 PE=4 SV=1) HSP 1 Score: 561.2 bits (1445), Expect = 6.9e-157 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1
BLAST of Csa3G006600 vs. TrEMBL
Match: A0A061G629_THECC (C globular stage isoform 1 OS=Theobroma cacao GN=TCM_016657 PE=4 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 8.2e-126 Identity = 217/274 (79.20%), Postives = 242/274 (88.32%), Query Frame = 1
BLAST of Csa3G006600 vs. TrEMBL
Match: B9S1J1_RICCO (Transmembrane protein 45a, putative OS=Ricinus communis GN=RCOM_0865410 PE=4 SV=1) HSP 1 Score: 452.6 bits (1163), Expect = 3.4e-124 Identity = 214/274 (78.10%), Postives = 246/274 (89.78%), Query Frame = 1
BLAST of Csa3G006600 vs. TrEMBL
Match: M5WV49_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009929mg PE=4 SV=1) HSP 1 Score: 450.7 bits (1158), Expect = 1.3e-123 Identity = 213/272 (78.31%), Postives = 242/272 (88.97%), Query Frame = 1
BLAST of Csa3G006600 vs. TrEMBL
Match: A0A067KGS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10819 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 1.1e-122 Identity = 212/274 (77.37%), Postives = 244/274 (89.05%), Query Frame = 1
BLAST of Csa3G006600 vs. TAIR10
Match: AT1G32120.1 (AT1G32120.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 419.5 bits (1077), Expect = 1.6e-117 Identity = 199/264 (75.38%), Postives = 229/264 (86.74%), Query Frame = 1
BLAST of Csa3G006600 vs. TAIR10
Match: AT1G55240.1 (AT1G55240.1 Family of unknown function (DUF716) ) HSP 1 Score: 171.4 bits (433), Expect = 7.7e-43 Identity = 93/271 (34.32%), Postives = 155/271 (57.20%), Query Frame = 1
BLAST of Csa3G006600 vs. TAIR10
Match: AT1G55230.1 (AT1G55230.1 Family of unknown function (DUF716) ) HSP 1 Score: 159.1 bits (401), Expect = 4.0e-39 Identity = 88/271 (32.47%), Postives = 143/271 (52.77%), Query Frame = 1
BLAST of Csa3G006600 vs. TAIR10
Match: AT5G19870.1 (AT5G19870.1 Family of unknown function (DUF716) ) HSP 1 Score: 141.7 bits (356), Expect = 6.6e-34 Identity = 83/269 (30.86%), Postives = 141/269 (52.42%), Query Frame = 1
BLAST of Csa3G006600 vs. TAIR10
Match: AT1G49470.1 (AT1G49470.1 Family of unknown function (DUF716) ) HSP 1 Score: 137.1 bits (344), Expect = 1.6e-32 Identity = 88/262 (33.59%), Postives = 125/262 (47.71%), Query Frame = 1
BLAST of Csa3G006600 vs. NCBI nr
Match: gi|449456761|ref|XP_004146117.1| (PREDICTED: transmembrane protein 45B [Cucumis sativus]) HSP 1 Score: 561.2 bits (1445), Expect = 9.8e-157 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1
BLAST of Csa3G006600 vs. NCBI nr
Match: gi|659095474|ref|XP_008448600.1| (PREDICTED: transmembrane protein 45B [Cucumis melo]) HSP 1 Score: 551.6 bits (1420), Expect = 7.8e-154 Identity = 267/274 (97.45%), Postives = 272/274 (99.27%), Query Frame = 1
BLAST of Csa3G006600 vs. NCBI nr
Match: gi|590680190|ref|XP_007040793.1| (C globular stage isoform 1 [Theobroma cacao]) HSP 1 Score: 458.0 bits (1177), Expect = 1.2e-125 Identity = 217/274 (79.20%), Postives = 242/274 (88.32%), Query Frame = 1
BLAST of Csa3G006600 vs. NCBI nr
Match: gi|645265345|ref|XP_008238108.1| (PREDICTED: transmembrane protein 45A [Prunus mume]) HSP 1 Score: 457.6 bits (1176), Expect = 1.5e-125 Identity = 217/272 (79.78%), Postives = 245/272 (90.07%), Query Frame = 1
BLAST of Csa3G006600 vs. NCBI nr
Match: gi|1009158490|ref|XP_015897318.1| (PREDICTED: transmembrane protein 45A-like [Ziziphus jujuba]) HSP 1 Score: 455.7 bits (1171), Expect = 5.8e-125 Identity = 214/274 (78.10%), Postives = 243/274 (88.69%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |