Csa2G357290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G357290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChlorophyll a-b-binding protein 8, chloroplastic; contains IPR022796 (Chlorophyll A-B binding protein), IPR023329 (Chlorophyll a/b binding protein domain)
LocationChr2 : 16853441 .. 16855004 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAGGAAAAGCAAAGAAAAAAGAGAGAGAGAAATAAGAAACACATAAAGAGAGGATAACAAGAAGAATAACGGCAGCCACTGCAAGAGGAGAACAAAGATCCATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATGTCTGTAACCAATTAGTCTTACATTACCACTCGATAATTGCACAAAACTGGAAACCTTAATTTAAAGATTGATGTTCTTTGTGTTGTGGCAGTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTCTAATTCTTCCTTATCCTCCATTTCCTTTCTTTAGGTGTGGCTGTATTCATCACCTTATCTGGTTTTACTTGGCTTTGAAGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGGTAATTTACATTTCTCTTGAAATTCTTAGAATGTTAGATAAAATATTGCAACGAAACAGAGTTCCGAAGCTACCTGTAAATTCTATACGAAGGCACCGTCTTACTATTCTGAGTCTCAATTTTTGTGTAACATTCAATTAAAACTCATACTTCAAAGGTAGTTTTGAAATGGTCATAAAAAGTGGAAGGAAGGAGTATGATTTTTTTTTAAAATTAAAGGATCTGAAGTTTATAGGATGCTCTCTTGATCATTTTACCAACTAGAATGCCCTAGAATATGAACAGTTTTGACTTTGAGGGATGATTACCTTGCAGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGTTAAATTTTCCACTCACATTCTCATCAAATTTTTCGTCTATCGTTTTCCCGGATTAATCTTTGTTCATTCAAATTACAGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAAAGAACAAGACGTTGAAACTTGATAGTCTCTTTACTCAATGAGCAAAATATAACATGACATTGGAGATTTATCAGCTAAAAAAGAATACAGATGAAAGAACAAATGACCTT

mRNA sequence

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Coding sequence (CDS)

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Protein sequence

MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP*
Homology
[Close]
BLAST of Csa2G357290 vs. Swiss-Prot
Match: LHCA5_ARATH (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 2.3e-99
Identity = 171/210 (81.43%), Postives = 189/210 (90.00%), Query Frame = 1 

Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA +GLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]
BLAST of Csa2G357290 vs. Swiss-Prot
Match: CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.1e-51
Identity = 114/253 (45.06%), Postives = 157/253 (62.06%), Query Frame = 1 

Query: 14  HPSSSSYTPLFNPSQFL-----RLRSPSRRTLLIAHAQSEH------RQTWLPGLDPPPH 73
           H S+S + P  +  +FL     RL      T + + A++        +  WLPGL  P +
Sbjct: 7   HASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDY 66

Query: 74  LDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPV 133
           L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P 
Sbjct: 67  LTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE 126

Query: 134 WYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEP 193
           WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F   + +    E 
Sbjct: 127 WYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEV 186

Query: 194 GYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHL 253
           GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HL
Sbjct: 187 GYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHL 246

Query: 254 SNPWHKTIIQTLS 256
           S+PWH TI+QT +
Sbjct: 247 SDPWHNTIVQTFN 251

[Close]
BLAST of Csa2G357290 vs. Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.0e-51
Identity = 106/207 (51.21%), Postives = 139/207 (67.15%), Query Frame = 1 

Query: 53  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 112
           WLPGL  P +L G+L GD GFDPLGL EDP++L+W+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 113 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTF-- 172
              GI  +P WY AG  EY FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 175

Query: 173 FGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT 232
           + L A     E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT
Sbjct: 176 YSLPAG----EVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVT 235

Query: 233 HTGPIDNLVEHLSNPWHKTIIQTLSSS 258
             GP DNL++H+S+PWH TI+QTL  +
Sbjct: 236 GKGPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]
BLAST of Csa2G357290 vs. Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.9e-49
Identity = 104/221 (47.06%), Postives = 130/221 (58.82%), Query Frame = 1 

Query: 36  SRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVH 95
           +R    +  A    R  W PG  PPP LDG+L GDFGFDPLGL  DP+SL+W  QAELVH
Sbjct: 51  ARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVH 110

Query: 96  CRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRY 155
           CR+AMLG +G+ + +LL   GI   P WY AG  EY F +  TLFIV+L+L+G+ E +R+
Sbjct: 111 CRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRW 170

Query: 156 MDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGR 215
            D   PG    +  F        G + GYPGG   +PLG          + + KEIKNGR
Sbjct: 171 ADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 230

Query: 216 LAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 256
           LAM+A++G + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 231 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]
BLAST of Csa2G357290 vs. Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.9e-49
Identity = 103/209 (49.28%), Postives = 127/209 (60.77%), Query Frame = 1 

Query: 43  AHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLG 102
           A A    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG
Sbjct: 45  AVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104

Query: 103 VSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPG 162
            +G+ + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PG
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPG 164

Query: 163 SQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAML 222
           S   +  F        G + GYPGG   +PLG          + + KEIKNGRLAM+A++
Sbjct: 165 SVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 224

Query: 223 GIFVQAYVTHTGPIDNLVEHLSNPWHKTI 251
           G + Q   T TGPIDNL  HL++P H TI
Sbjct: 225 GAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]
BLAST of Csa2G357290 vs. TrEMBL
Match: A0A0A0LRB4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 9.4e-148
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 

Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
           PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240
           EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

Query: 241 HLSNPWHKTIIQTLSSSSP 260
           HLSNPWHKTIIQTLSSSSP
Sbjct: 241 HLSNPWHKTIIQTLSSSSP 259

[Close]
BLAST of Csa2G357290 vs. TrEMBL
Match: A0A0F7GZW1_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=California macrophylla GN=LHCA5 PE=2 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.4e-105
Identity = 179/231 (77.49%), Postives = 208/231 (90.04%), Query Frame = 1 

Query: 27  SQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLK 86
           S F     PSR +  +   +++ R TWLPGLDPPP+L+GTLAGD+GFDPLGLGEDP+SLK
Sbjct: 27  SSFCFSAKPSRHSYTVPVVRAQERPTWLPGLDPPPYLNGTLAGDYGFDPLGLGEDPESLK 86

Query: 87  WYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLL 146
           WYVQAELVHCRFAM GV+G+L+TDLLRVTG+S LPVWY AGA+++GFA+  TLF+VQ++L
Sbjct: 87  WYVQAELVHCRFAMAGVAGILVTDLLRVTGLSNLPVWYEAGAMKFGFASTTTLFLVQMIL 146

Query: 147 MGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWK 206
           MGFVETKRYMDF +PGSQA++GTFFGLEAAF+GLEPGYPGGP+LNPLG+AKDIKNAHDWK
Sbjct: 147 MGFVETKRYMDFINPGSQAEDGTFFGLEAAFEGLEPGYPGGPILNPLGLAKDIKNAHDWK 206

Query: 207 LKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSS 258
           LKEIKNGRLAM+AMLGIFVQA VTH GPIDNLV+HLSNPWHKTI+QTLS S
Sbjct: 207 LKEIKNGRLAMIAMLGIFVQASVTHAGPIDNLVDHLSNPWHKTIVQTLSCS 257

[Close]
BLAST of Csa2G357290 vs. TrEMBL
Match: A0A0F7GZR5_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Geranium maderense GN=LHCA5 PE=2 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 7.5e-105
Identity = 184/247 (74.49%), Postives = 214/247 (86.64%), Query Frame = 1 

Query: 12  HLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDF 71
           H+H SS  ++    P       +PSR +  +  AQ   R TWLPGLDPPPHL+GTLAGD+
Sbjct: 25  HIHRSSFGFSA--KPGV-----APSRHSRTVVRAQE--RPTWLPGLDPPPHLNGTLAGDY 84

Query: 72  GFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEY 131
           GFDPLGLGEDP+SLKWYVQAEL+HCRFAM GV+G+LLTDLLRVTGIS +PVWY AGA+++
Sbjct: 85  GFDPLGLGEDPESLKWYVQAELMHCRFAMAGVAGILLTDLLRVTGISSIPVWYEAGAMKF 144

Query: 132 GFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLN 191
           GFA+ RTLFIVQ++LMGFVETKRYMDF +PGSQA++GTFFGLEAA +GLEPGYPGGP+LN
Sbjct: 145 GFASTRTLFIVQMILMGFVETKRYMDFINPGSQAEDGTFFGLEAALEGLEPGYPGGPILN 204

Query: 192 PLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTII 251
           PLG+AKDIKNAHDWKLKEIKNGRLAM+AMLG FVQA VTH GPIDNL EHLSNPWHKTI+
Sbjct: 205 PLGLAKDIKNAHDWKLKEIKNGRLAMIAMLGFFVQASVTHAGPIDNLAEHLSNPWHKTIV 262

Query: 252 QTLSSSS 259
           QTL+++S
Sbjct: 265 QTLANNS 262

[Close]
BLAST of Csa2G357290 vs. TrEMBL
Match: A0A061FAU5_THECC (Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_033843 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.7e-104
Identity = 188/239 (78.66%), Postives = 208/239 (87.03%), Query Frame = 1 

Query: 20  YTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLG 79
           Y P    +  L   S  RR   IA  Q++ R TWLPGLDPPP+LDGTLAGD+GFDPLGLG
Sbjct: 26  YKPSLGAASTLWSTSAPRRYGQIA-VQAQQRPTWLPGLDPPPYLDGTLAGDYGFDPLGLG 85

Query: 80  EDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTL 139
           EDP+SLKWYVQAELVH RFAM GV+G+L TDLLRVTGIS LPVWY AGAV++ FA+  TL
Sbjct: 86  EDPESLKWYVQAELVHARFAMAGVAGILFTDLLRVTGISNLPVWYEAGAVKFDFASTGTL 145

Query: 140 FIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDI 199
            +VQLLLMGFVETKRYMDF SPGSQA+EG+FFGLEAA +GLEPGYPGGPLLNPLG+AKDI
Sbjct: 146 IVVQLLLMGFVETKRYMDFISPGSQAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDI 205

Query: 200 KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           KNAH+WKLKEIKNGRLAM+AMLGIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTL++SS
Sbjct: 206 KNAHEWKLKEIKNGRLAMIAMLGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLANSS 263

[Close]
BLAST of Csa2G357290 vs. TrEMBL
Match: I1K7Z5_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_06G039700 PE=3 SV=2)

HSP 1 Score: 387.1 bits (993), Expect = 1.7e-104
Identity = 181/212 (85.38%), Postives = 199/212 (93.87%), Query Frame = 1 

Query: 47  SEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGV 106
           ++ R TWLPGLDPPPHLDGTLAGDFGFDPLGL EDP SL+WYVQAELVHCRFAMLGV G+
Sbjct: 73  AQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGI 132

Query: 107 LLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQ 166
           L+TDLLRVTGIS++PVW+ AGAV+Y FAN +TLF+VQL+LMGFVETKRYMDF SPGSQA+
Sbjct: 133 LVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRYMDFVSPGSQAK 192

Query: 167 EGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQ 226
           EG+FFGLEA+ KGLEPGYPGGPLLNPLG+AKDI NAHDWKLKEIKNGRLAMVAMLGIFVQ
Sbjct: 193 EGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQ 252

Query: 227 AYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           A VTH GPIDNLVEHLSNPWHKTIIQTL++SS
Sbjct: 253 ASVTHVGPIDNLVEHLSNPWHKTIIQTLANSS 284

[Close]
BLAST of Csa2G357290 vs. TAIR10
Match: AT1G45474.1 (AT1G45474.1 photosystem I light harvesting complex gene 5)

HSP 1 Score: 363.2 bits (931), Expect = 1.3e-100
Identity = 171/210 (81.43%), Postives = 189/210 (90.00%), Query Frame = 1 

Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 -FFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
            FFGLEAA +GLEPGYPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           VTHTGPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]
BLAST of Csa2G357290 vs. TAIR10
Match: AT3G47470.1 (AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-52
Identity = 114/253 (45.06%), Postives = 157/253 (62.06%), Query Frame = 1 

Query: 14  HPSSSSYTPLFNPSQFL-----RLRSPSRRTLLIAHAQSEH------RQTWLPGLDPPPH 73
           H S+S + P  +  +FL     RL      T + + A++        +  WLPGL  P +
Sbjct: 7   HASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDY 66

Query: 74  LDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPV 133
           L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P 
Sbjct: 67  LTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE 126

Query: 134 WYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEP 193
           WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F   + +    E 
Sbjct: 127 WYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KQYSLPKGEV 186

Query: 194 GYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHL 253
           GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HL
Sbjct: 187 GYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHL 246

Query: 254 SNPWHKTIIQTLS 256
           S+PWH TI+QT +
Sbjct: 247 SDPWHNTIVQTFN 251

[Close]
BLAST of Csa2G357290 vs. TAIR10
Match: AT3G61470.1 (AT3G61470.1 photosystem I light harvesting complex gene 2)

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-50
Identity = 103/209 (49.28%), Postives = 127/209 (60.77%), Query Frame = 1 

Query: 43  AHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLG 102
           A A    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG
Sbjct: 45  AVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104

Query: 103 VSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPG 162
            +G+ + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PG
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPG 164

Query: 163 SQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAML 222
           S   +  F        G + GYPGG   +PLG          + + KEIKNGRLAM+A++
Sbjct: 165 SVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVM 224

Query: 223 GIFVQAYVTHTGPIDNLVEHLSNPWHKTI 251
           G + Q   T TGPIDNL  HL++P H TI
Sbjct: 225 GAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]
BLAST of Csa2G357290 vs. TAIR10
Match: AT1G19150.1 (AT1G19150.1 photosystem I light harvesting complex gene 6)

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-42
Identity = 92/208 (44.23%), Postives = 123/208 (59.13%), Query Frame = 1 

Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R  W PG  PP  LDG+L GDFGFDPLGLG DP +LKW+ QAEL+H R+AML V+G+++ 
Sbjct: 65  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIP 124

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 169
           + L   G  E   WY+AG+ EY FA+  TLF+ Q++LMG+ E +R+ D   PGS   E  
Sbjct: 125 ECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPK 184

Query: 170 FFGLEAAFKGLEPGYPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
           +          + GYPGG   + +   +   +     + KEIKNGRLAM+A LG   QA 
Sbjct: 185 Y--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAT 244

Query: 230 VTHTGPIDNLVEHLSNPWHKTIIQTLSS 257
            T   PI+NL+ HL++P H  +    +S
Sbjct: 245 YTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]
BLAST of Csa2G357290 vs. TAIR10
Match: AT1G61520.1 (AT1G61520.1 photosystem I light harvesting complex gene 3)

HSP 1 Score: 168.7 bits (426), Expect = 4.7e-42
Identity = 91/225 (40.44%), Postives = 131/225 (58.22%), Query Frame = 1 

Query: 46  QSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSL------KWYVQAELVHCRFA 105
           Q  +R  W        +LDG+L GD+GFDPLGL  DP+        +W    E+++ RFA
Sbjct: 49  QGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFA 108

Query: 106 MLGVSGVLLTDLLRVTGI----SELPVWYNAGAVEYG-----FANKRTLFIVQLLLMGFV 165
           MLG +G +  ++L   G+    + LP W+  G +        +A+  TLF++++ LMGF 
Sbjct: 109 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 168

Query: 166 ETKRYMDFKSPGSQAQEGTFFGLEAAFKGL-EPGYPGGPLLNPLGIAKDIKNAHDWKLKE 225
           E +R  D+ +PGS  ++  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE
Sbjct: 169 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 228

Query: 226 IKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 255
           +KNGRLAM+A+LG F+Q  VT  GP  NL++HL++P +  ++ +L
Sbjct: 229 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

[Close]
BLAST of Csa2G357290 vs. NCBI nr
Match: gi|449466336|ref|XP_004150882.1| (PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 530.8 bits (1366), Expect = 1.3e-147
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 

Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
           PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240
           EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

Query: 241 HLSNPWHKTIIQTLSSSSP 260
           HLSNPWHKTIIQTLSSSSP
Sbjct: 241 HLSNPWHKTIIQTLSSSSP 259

[Close]
BLAST of Csa2G357290 vs. NCBI nr
Match: gi|659087761|ref|XP_008444623.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo])

HSP 1 Score: 503.1 bits (1294), Expect = 3.0e-139
Identity = 245/260 (94.23%), Postives = 253/260 (97.31%), Query Frame = 1 

Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPS-QFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HLHPSSSS+TPLFNP+ QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKG 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF+G
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 LEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240
           LEPGYPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

Query: 241 EHLSNPWHKTIIQTLSSSSP 260
           EHLSNPWHKTIIQTLSSSSP
Sbjct: 241 EHLSNPWHKTIIQTLSSSSP 260

[Close]
BLAST of Csa2G357290 vs. NCBI nr
Match: gi|719969964|ref|XP_010270018.1| (PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 392.5 bits (1007), Expect = 5.7e-106
Identity = 199/264 (75.38%), Postives = 218/264 (82.58%), Query Frame = 1 

Query: 1   MAVSFSAATAL-HLHPSSSSYTPLF---NPSQFLRLRS-PSRRTLLIAHAQSEHRQTWLP 60
           MAV+   A  L     SS S T +F   N ++F   R  P+ R+ + A AQ   R TWLP
Sbjct: 1   MAVAMGKAVFLGRCSTSSLSNTAIFRGRNINRFSAARPRPALRSSIAARAQ---RPTWLP 60

Query: 61  GLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVT 120
           GLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVH RFAM GV+G+L TDLLRVT
Sbjct: 61  GLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVT 120

Query: 121 GISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEA 180
           GIS LP+WY AGAV++ FA+  TLFIVQL LMGFVETKRYMDF +PGSQA+EGTFFGLEA
Sbjct: 121 GISNLPIWYEAGAVKFEFASTETLFIVQLFLMGFVETKRYMDFTNPGSQAKEGTFFGLEA 180

Query: 181 AFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 240
           A +GLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH GPI
Sbjct: 181 ALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHAGPI 240

Query: 241 DNLVEHLSNPWHKTIIQTLSSSSP 260
           DNLV HLSNPWH+T+IQ LS  SP
Sbjct: 241 DNLVTHLSNPWHRTVIQILSGVSP 261

[Close]
BLAST of Csa2G357290 vs. NCBI nr
Match: gi|571458840|ref|XP_003528272.2| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Glycine max])

HSP 1 Score: 387.1 bits (993), Expect = 2.4e-104
Identity = 181/212 (85.38%), Postives = 199/212 (93.87%), Query Frame = 1 

Query: 47  SEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGV 106
           ++ R TWLPGLDPPPHLDGTLAGDFGFDPLGL EDP SL+WYVQAELVHCRFAMLGV G+
Sbjct: 73  AQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGI 132

Query: 107 LLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQ 166
           L+TDLLRVTGIS++PVW+ AGAV+Y FAN +TLF+VQL+LMGFVETKRYMDF SPGSQA+
Sbjct: 133 LVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRYMDFVSPGSQAK 192

Query: 167 EGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQ 226
           EG+FFGLEA+ KGLEPGYPGGPLLNPLG+AKDI NAHDWKLKEIKNGRLAMVAMLGIFVQ
Sbjct: 193 EGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQ 252

Query: 227 AYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           A VTH GPIDNLVEHLSNPWHKTIIQTL++SS
Sbjct: 253 ASVTHVGPIDNLVEHLSNPWHKTIIQTLANSS 284

[Close]
BLAST of Csa2G357290 vs. NCBI nr
Match: gi|590592316|ref|XP_007017245.1| (Light-harvesting complex I protein Lhca5 isoform 1 [Theobroma cacao])

HSP 1 Score: 387.1 bits (993), Expect = 2.4e-104
Identity = 188/239 (78.66%), Postives = 208/239 (87.03%), Query Frame = 1 

Query: 20  YTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLG 79
           Y P    +  L   S  RR   IA  Q++ R TWLPGLDPPP+LDGTLAGD+GFDPLGLG
Sbjct: 26  YKPSLGAASTLWSTSAPRRYGQIA-VQAQQRPTWLPGLDPPPYLDGTLAGDYGFDPLGLG 85

Query: 80  EDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTL 139
           EDP+SLKWYVQAELVH RFAM GV+G+L TDLLRVTGIS LPVWY AGAV++ FA+  TL
Sbjct: 86  EDPESLKWYVQAELVHARFAMAGVAGILFTDLLRVTGISNLPVWYEAGAVKFDFASTGTL 145

Query: 140 FIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDI 199
            +VQLLLMGFVETKRYMDF SPGSQA+EG+FFGLEAA +GLEPGYPGGPLLNPLG+AKDI
Sbjct: 146 IVVQLLLMGFVETKRYMDFISPGSQAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDI 205

Query: 200 KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 259
           KNAH+WKLKEIKNGRLAM+AMLGIFVQAYVTH GPIDNLVEHLSNPWHKTIIQTL++SS
Sbjct: 206 KNAHEWKLKEIKNGRLAMIAMLGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLANSS 263

The following BLAST results are available for this feature:
BLAST of Csa2G357290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LHCA5_ARATH2.3e-9981.43Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th... [more]
CA4_ARATH3.1e-5145.06Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA... [more]
CB24_PEA4.0e-5151.21Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE... [more]
CB12_SOLLC4.9e-4947.06Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7... [more]
LHCA2_ARATH4.9e-4949.28Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th... [more]
BLAST of Csa2G357290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB4_CUCSA9.4e-148100.00Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_2G35729... [more]
A0A0F7GZW1_9ROSI3.4e-10577.49Chlorophyll a-b binding protein, chloroplastic OS=California macrophylla GN=LHCA... [more]
A0A0F7GZR5_9ROSI7.5e-10574.49Chlorophyll a-b binding protein, chloroplastic OS=Geranium maderense GN=LHCA5 PE... [more]
A0A061FAU5_THECC1.7e-10478.66Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_033843 ... [more]
I1K7Z5_SOYBN1.7e-10485.38Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_06G039700... [more]
BLAST of Csa2G357290 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G45474.11.3e-10081.43 photosystem I light harvesting complex gene 5[more]
AT3G47470.11.7e-5245.06 light-harvesting chlorophyll-protein complex I subunit A4[more]
AT3G61470.12.8e-5049.28 photosystem I light harvesting complex gene 2[more]
AT1G19150.13.6e-4244.23 photosystem I light harvesting complex gene 6[more]
AT1G61520.14.7e-4240.44 photosystem I light harvesting complex gene 3[more]
BLAST of Csa2G357290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466336|ref|XP_004150882.1|1.3e-147100.00PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Cucumis sativus][more]
gi|659087761|ref|XP_008444623.1|3.0e-13994.23PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo][more]
gi|719969964|ref|XP_010270018.1|5.7e-10675.38PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Nelumbo nucifera][more]
gi|571458840|ref|XP_003528272.2|2.4e-10485.38PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Glycine max][more]
gi|590592316|ref|XP_007017245.1|2.4e-10478.66Light-harvesting complex I protein Lhca5 isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0009644 response to high light intensity
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009645 response to low light intensity stimulus
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0009409 response to cold
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009782 photosystem I antenna complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0031409 pigment binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102043cucumber EST collection version 3.0transcribed_cluster
CU127328cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G357290.1Csa2G357290.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU102043CU102043transcribed_cluster
CU127328CU127328transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 46..257
score: 6.4E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 59..227
score: 8.8
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 51..253
score: 6.3
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 47..256
score: 6.54
NoneNo IPR availablePANTHERPTHR21649:SF23SUBFAMILY NOT NAMEDcoord: 46..257
score: 6.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G357290Cla022573Watermelon (97103) v1cuwmB111
Csa2G357290MELO3C010859Melon (DHL92) v3.5.1cumeB117
Csa2G357290ClCG08G015950Watermelon (Charleston Gray)cuwcgB169
Csa2G357290Lsi08G014720Bottle gourd (USVL1VR-Ls)culsiB142
Csa2G357290MELO3C010859.2Melon (DHL92) v3.6.1cumedB114
Csa2G357290Cla97C08G159510Watermelon (97103) v2cuwmbB163
Csa2G357290Bhi04G000321Wax gourdcuwgoB162
Csa2G357290CSPI02G19090Wild cucumber (PI 183967)cpicuB065
Csa2G357290Cucsa.232950Cucumber (Gy14) v1cgycuB326
Csa2G357290CmaCh12G005510Cucurbita maxima (Rimu)cmacuB174
Csa2G357290CmoCh12G004950Cucurbita moschata (Rifu)cmocuB158
Csa2G357290Cp4.1LG07g05190Cucurbita pepo (Zucchini)cpecuB819
Csa2G357290CsGy2G018980Cucumber (Gy14) v2cgybcuB057
Csa2G357290Carg26151Silver-seed gourdcarcuB0086
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G357290Melon (DHL92) v3.5.1cumeB106
Csa2G357290Melon (DHL92) v3.5.1cumeB149
Csa2G357290Watermelon (Charleston Gray)cuwcgB140
Csa2G357290Watermelon (97103) v1cuwmB126
Csa2G357290Cucurbita pepo (Zucchini)cpecuB096
Csa2G357290Cucurbita pepo (Zucchini)cpecuB539
Csa2G357290Cucurbita pepo (Zucchini)cpecuB771
Csa2G357290Bottle gourd (USVL1VR-Ls)culsiB117
Csa2G357290Cucumber (Gy14) v2cgybcuB160
Csa2G357290Cucumber (Gy14) v2cgybcuB297
Csa2G357290Melon (DHL92) v3.6.1cumedB100
Csa2G357290Melon (DHL92) v3.6.1cumedB141
Csa2G357290Silver-seed gourdcarcuB0202
Csa2G357290Silver-seed gourdcarcuB0788
Csa2G357290Watermelon (97103) v2cuwmbB135
Csa2G357290Wax gourdcuwgoB198
Csa2G357290Cucumber (Chinese Long) v2cucuB062
Csa2G357290Cucumber (Chinese Long) v2cucuB079
Csa2G357290Cucumber (Gy14) v1cgycuB318
Csa2G357290Cucumber (Gy14) v1cgycuB493
Csa2G357290Cucurbita maxima (Rimu)cmacuB011
Csa2G357290Cucurbita maxima (Rimu)cmacuB437
Csa2G357290Cucurbita maxima (Rimu)cmacuB784
Csa2G357290Cucurbita moschata (Rifu)cmocuB002
Csa2G357290Cucurbita moschata (Rifu)cmocuB107
Csa2G357290Cucurbita moschata (Rifu)cmocuB424
Csa2G357290Cucurbita moschata (Rifu)cmocuB777