CsGy2G018980 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G018980
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr2 : 28570071 .. 28571421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATGTCTGTAACCAATTAGTCTTACATTACCACTCGATAATTGCACAAAACTGGAAACCTTAATTTAAAGATTGATGTTCTTTGTGTTGTGGCAGTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTCTAATTCTTCCTTATCCTCCATTTCCTTTCTTTAGGTGTGGCTGTATTCATCACCTTATCTGGTTTTACTTGGCTTTGAAGGTTTGTGGAAACTAAAAGGTATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGATTAGAAGCTGCCTTTAAAGGTCTCGAGCCCGGGTAATTTACATTTCTCTTGAAATTCTTAGAATGTTAGATAAAATATTGCAACGAAACAGAGTTCCGAAGCTACCTGTAAATTCTATACGAAGGCACCGTCTTACTATTCTGAGTCTCAATTTTTGTGTAACATTCAATTAAAACTCATACTTCAAAGGTAGTTTTGAAATGGTCATAAAAAGTGGAAGGAAGGAGTATGATTTTTTTTTAAAATTAAAGGATCTGAAGTTTATAGGATGCTCTCTTGATCATTTTACCAACTAGAATGCCCTAGAATATGAACAGTTTTGACTTTGAGGGATGATTACCTTGCAGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGTTAAATTTTCCACTCACATTCTCATCAAATTTTTCGTCTATCGTTTTCCCGGATTAATCTTTGTTCATTCAAATTACAGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

mRNA sequence

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Coding sequence (CDS)

ATGGCGGTTTCATTTTCAGCAGCCACTGCCTTACATCTCCACCCTTCTTCTTCATCTTACACTCCCTTATTCAACCCTAGCCAGTTCCTCCGCCTCCGATCCCCTTCCCGCCGCACACTATTAATAGCTCATGCCCAATCGGAGCACCGTCAAACATGGCTTCCCGGCCTCGACCCGCCACCGCATCTCGACGGAACCCTTGCTGGGGATTTTGGATTCGACCCACTTGGGCTTGGCGAGGACCCACAAAGCTTGAAGTGGTACGTTCAAGCAGAGCTTGTTCATTGCCGCTTTGCCATGCTCGGCGTTTCTGGAGTTCTTCTCACTGATTTGCTTCGTGTTACAGGGATCAGTGAATTGCCAGTTTGGTATAATGCCGGTGCCGTTGAATATGGTTTTGCCAACAAACGAACTCTTTTCATTGTTCAGCTGCTTTTGATGGGGTTTGTGGAAACTAAAAGATACCCTGGGGGTCCTCTGTTGAATCCTCTTGGCATTGCTAAAGATATCAAGAATGCTCATGACTGGAAACTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTTGGGATCTTTGTGCAAGCTTATGTTACTCATACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTTTCAAGCTCAAGTCCTTAA

Protein sequence

MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP

Homology

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BLAST of CsGy2G018980 vs. NCBI nr
Match: XP_004150882.1 (PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_2G357290 [Cucumis sativus])

HSP 1 Score: 459.1 bits (1180), Expect = 8.6e-126
Identity = 230/259 (88.80%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
           PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR-------------------------- 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR                          
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 ---YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 231
              YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

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BLAST of CsGy2G018980 vs. NCBI nr
Match: XP_008444623.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 433.0 bits (1112), Expect = 6.6e-118
Identity = 217/260 (83.46%), Postives = 224/260 (86.15%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNP-SQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HLHPSSSS+TPLFNP +QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR------------------------- 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR                         
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 ----YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 231
               YPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

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BLAST of CsGy2G018980 vs. NCBI nr
Match: XP_023001834.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 384.0 bits (985), Expect = 3.5e-103
Identity = 199/260 (76.54%), Postives = 208/260 (80.00%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HL PSSS Y+   +  Q L LRSPSRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATPFHLLPSSSLYSSSLSSKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR------------------------- 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKR                         
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 ----YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 231
               YPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

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BLAST of CsGy2G018980 vs. NCBI nr
Match: XP_022951251.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 383.6 bits (984), Expect = 4.6e-103
Identity = 197/257 (76.65%), Postives = 207/257 (80.54%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI-AHAQSEHRQTWLPGLDP 60
           MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT+   A +QS+ RQTWLPGLDP
Sbjct: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGISE
Sbjct: 61  PPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR------------------------- 180
           LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKR                         
Sbjct: 121 LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEG 180

Query: 181 ----YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 228
               YPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLV 240

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BLAST of CsGy2G018980 vs. NCBI nr
Match: XP_023536986.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.8 bits (961), Expect = 2.1e-100
Identity = 194/259 (74.90%), Postives = 203/259 (78.38%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEH---RQTWLPGL 60
           MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT++           RQTWLPGL
Sbjct: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVIAQXXXXXXXXPRQTWLPGL 60

Query: 61  DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGI 120
           DPPPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGI
Sbjct: 61  DPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGI 120

Query: 121 SELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR----------------------- 180
           SELPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKR                       
Sbjct: 121 SELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAF 180

Query: 181 ------YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDN 228
                 YPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDN
Sbjct: 181 EGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDN 240

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BLAST of CsGy2G018980 vs. TAIR10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5)

HSP 1 Score: 308.5 bits (789), Expect = 3.4e-84
Identity = 147/210 (70.00%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR--------------- 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKR               
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 ---------------YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
                          YPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

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BLAST of CsGy2G018980 vs. TAIR10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46
Identity = 105/251 (41.83%), Postives = 145/251 (57.77%), Query Frame = 0


Query: 14  HPSSSSYTPLFNPSQFL-----RLRSPSRRTLLIAHAQSE------HRQTWLPGLDPPPH 73
           H S+S + P  +  +FL     RL      T + + A++        +  WLPGL  P +
Sbjct: 7   HASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDY 66

Query: 74  LDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPV 133
           L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P 
Sbjct: 67  LTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE 126

Query: 134 WYNAGAVEYGFANKRTLFIVQLLLMGFVETKR---------------------------Y 193
           WY+AG  +Y FA+  TLF+++ +L  +VE +R                           Y
Sbjct: 127 WYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGY 186

Query: 194 PGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSN 227
           PGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HLS+
Sbjct: 187 PGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 246

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BLAST of CsGy2G018980 vs. TAIR10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 183.0 bits (463), Expect = 2.1e-46
Identity = 96/207 (46.38%), Postives = 119/207 (57.49%), Query Frame = 0


Query: 43  AHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLG 102
           A A    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG
Sbjct: 45  AVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104

Query: 103 VSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR-------- 162
            +G+ + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R        
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPG 164

Query: 163 -------------------YPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAMLGI 222
                              YPGG   +PLG          + + KEIKNGRLAM+A++G 
Sbjct: 165 SVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGA 224

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BLAST of CsGy2G018980 vs. TAIR10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40
Identity = 87/208 (41.83%), Postives = 117/208 (56.25%), Query Frame = 0


Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R  W PG  PP  LDG+L GDFGFDPLGLG DP +LKW+ QAEL+H R+AML V+G+++ 
Sbjct: 65  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIP 124

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYPGGPLLNPLGIAKD 169
           + L   G  E   WY+AG+ EY FA+  TLF+ Q++LMG+ E +R+    L+ P  +  +
Sbjct: 125 ECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRW--ADLIKPGSVDIE 184

Query: 170 IKNAHD-------------------W-----------KLKEIKNGRLAMVAMLGIFVQAY 228
            K  H                    W           + KEIKNGRLAM+A LG   QA 
Sbjct: 185 PKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAT 244

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BLAST of CsGy2G018980 vs. TAIR10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3)

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-36
Identity = 81/224 (36.16%), Postives = 119/224 (53.12%), Query Frame = 0


Query: 46  QSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSL------KWYVQAELVHCRFA 105
           Q  +R  W        +LDG+L GD+GFDPLGL  DP+        +W    E+++ RFA
Sbjct: 49  QGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFA 108

Query: 106 MLGVSGVLLTDLLRVTGI----SELPVWYNAGAVEYG-----FANKRTLFIVQLLLMGFV 165
           MLG +G +  ++L   G+    + LP W+  G +        +A+  TLF++++ LMGF 
Sbjct: 109 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 168

Query: 166 ETKR-----------------------------YPGGPLLNPLGIAKDIKNAHDWKLKEI 225
           E +R                             YPGGP  NPLG  KD K+  + KLKE+
Sbjct: 169 EHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEV 228

[Close]

BLAST of CsGy2G018980 vs. Swiss-Prot
Match: sp|Q9C639|LHCA5_ARATH (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 6.1e-83
Identity = 147/210 (70.00%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 50  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLT 109
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLGV+G+L T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 110 DLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR--------------- 169
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKR               
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 170 ---------------YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 229
                          YPGGPLLNPLG+AKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

[Close]

BLAST of CsGy2G018980 vs. Swiss-Prot
Match: sp|P10708|CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.8e-46
Identity = 98/219 (44.75%), Postives = 123/219 (56.16%), Query Frame = 0


Query: 36  SRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVH 95
           +R    +  A    R  W PG  PPP LDG+L GDFGFDPLGL  DP+SL+W  QAELVH
Sbjct: 51  ARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVH 110

Query: 96  CRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR- 155
           CR+AMLG +G+ + +LL   GI   P WY AG  EY F +  TLFIV+L+L+G+ E +R 
Sbjct: 111 CRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRW 170

Query: 156 --------------------------YPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLA 215
                                     YPGG   +PLG          + + KEIKNGRLA
Sbjct: 171 ADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 230

Query: 216 MVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLS 227
           M+A++G + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 231 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of CsGy2G018980 vs. Swiss-Prot
Match: sp|P27521|CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-45
Identity = 105/251 (41.83%), Postives = 145/251 (57.77%), Query Frame = 0


Query: 14  HPSSSSYTPLFNPSQFL-----RLRSPSRRTLLIAHAQSE------HRQTWLPGLDPPPH 73
           H S+S + P  +  +FL     RL      T + + A++        +  WLPGL  P +
Sbjct: 7   HASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDY 66

Query: 74  LDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPV 133
           L G+LAGD GFDPLGL EDP++LKW+VQAELV+ R+AMLGV+G+LL ++    GI  +P 
Sbjct: 67  LTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE 126

Query: 134 WYNAGAVEYGFANKRTLFIVQLLLMGFVETKR---------------------------Y 193
           WY+AG  +Y FA+  TLF+++ +L  +VE +R                           Y
Sbjct: 127 WYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGY 186

Query: 194 PGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSN 227
           PGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HLS+
Sbjct: 187 PGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 246

[Close]

BLAST of CsGy2G018980 vs. Swiss-Prot
Match: sp|Q9SQL2|CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.0e-45
Identity = 95/203 (46.80%), Postives = 126/203 (62.07%), Query Frame = 0


Query: 53  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLL 112
           WLPGL  P +L G+L GD GFDPLGL EDP++L+W+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 113 RVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR------------------ 172
              GI  +P WY AG  EY FA+  TLF+++ +L  +VE +R                  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 175

Query: 173 ---------YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGP 229
                    YPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT  GP
Sbjct: 176 YSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGKGP 235

[Close]

BLAST of CsGy2G018980 vs. Swiss-Prot
Match: sp|Q9SYW8|LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.9e-45
Identity = 96/207 (46.38%), Postives = 119/207 (57.49%), Query Frame = 0


Query: 43  AHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLG 102
           A A    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VHCR+AMLG
Sbjct: 45  AVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104

Query: 103 VSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR-------- 162
            +G+ + + L   GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R        
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPG 164

Query: 163 -------------------YPGGPLLNPLGIAK-DIKNAHDWKLKEIKNGRLAMVAMLGI 222
                              YPGG   +PLG          + + KEIKNGRLAM+A++G 
Sbjct: 165 SVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGA 224

[Close]

BLAST of CsGy2G018980 vs. TrEMBL
Match: tr|A0A0A0LRB4|A0A0A0LRB4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 5.7e-126
Identity = 230/259 (88.80%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60
           MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPP 60

Query: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120
           PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL
Sbjct: 61  PHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISEL 120

Query: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR-------------------------- 180
           PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR                          
Sbjct: 121 PVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFKGL 180

Query: 181 ---YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 231
              YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE
Sbjct: 181 EPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVE 240

[Close]

BLAST of CsGy2G018980 vs. TrEMBL
Match: tr|A0A1S3BBL1|A0A1S3BBL1_CUCME (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487892 PE=3 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 4.3e-118
Identity = 217/260 (83.46%), Postives = 224/260 (86.15%), Query Frame = 0


Query: 1   MAVSFSAATALHLHPSSSSYTPLFNP-SQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDP 60
           MAVS SAAT  HLHPSSSS+TPLFNP +QF+RLRSPSR +LLIAHAQSEHRQTWLPGLDP
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLPGLDP 60

Query: 61  PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 120
           PP+LDGTL GDFGFDPLGLGEDP SLKWYVQAELVHCRFAMLGV+GVLLTDLLRVTGISE
Sbjct: 61  PPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTGISE 120

Query: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR------------------------- 180
           LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR                         
Sbjct: 121 LPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAFEG 180

Query: 181 ----YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 231
               YPGGPLLNPLGIAKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV
Sbjct: 181 LEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLV 240

[Close]

BLAST of CsGy2G018980 vs. TrEMBL
Match: tr|A0A2N9FZC5|A0A2N9FZC5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20241 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 6.1e-88
Identity = 166/252 (65.87%), Postives = 192/252 (76.19%), Query Frame = 0


Query: 5    FSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPGLDPPPHLD 64
            +S+    +++  SS  T  F P+     R  + R L+    +++ R TWLPGLDPPP+LD
Sbjct: 774  YSSFICKNIYKPSSGVTKTFWPT-----RPGTTRRLIRTVVRAQLRPTWLPGLDPPPYLD 833

Query: 65   GTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWY 124
            G+LAGD+GFDPLGLGEDP+SLKWYVQAELVH RFAMLG++G+LLTD+LRVTGIS +PVWY
Sbjct: 834  GSLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILLTDILRVTGISNIPVWY 893

Query: 125  NAGAVEYGFANKRTLFIVQLLLMGFVETKR----------------------------YP 184
            +AGAV+Y FAN +TLFIVQLLLMGFVETKR                            YP
Sbjct: 894  DAGAVKYEFANTQTLFIVQLLLMGFVETKRYMDFVSPGSQAEGPFFGIENGFEGLEPGYP 953

Query: 185  GGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNP 229
            GGPLLNPLG+AKDIKNAHDWK KEIKNGRLAMVAMLGIFVQAYVTH GPIDNLVEHLSNP
Sbjct: 954  GGPLLNPLGLAKDIKNAHDWKQKEIKNGRLAMVAMLGIFVQAYVTHVGPIDNLVEHLSNP 1013

[Close]

BLAST of CsGy2G018980 vs. TrEMBL
Match: tr|A0A0F7H094|A0A0F7H094_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Pelargonium transvaalense OX=158603 GN=LHCA5 PE=2 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.8e-87
Identity = 159/225 (70.67%), Postives = 178/225 (79.11%), Query Frame = 0


Query: 34  SPSRRTLLIAHAQSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAEL 93
           +P R +  +  AQ   R TWLPGLDPPP+L+GTL GD+GFDPLGLGEDP++LKWYVQAEL
Sbjct: 44  APMRHSRTVVRAQ--ERPTWLPGLDPPPYLNGTLVGDYGFDPLGLGEDPETLKWYVQAEL 103

Query: 94  VHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETK 153
           VHCRFAM GV+G+LLTDLLRVTGIS LPVWY AGAV+YGFA+ RTLF+VQ+LLMGFVETK
Sbjct: 104 VHCRFAMAGVAGILLTDLLRVTGISNLPVWYEAGAVKYGFASTRTLFMVQMLLMGFVETK 163

Query: 154 R-----------------------------YPGGPLLNPLGIAKDIKNAHDWKLKEIKNG 213
           R                             YPGGP+LNPLG+AKDIKNAHDWKLKEIKNG
Sbjct: 164 RYMDYVNPGSQAQDGIFFGIEASFEGLEPGYPGGPILNPLGLAKDIKNAHDWKLKEIKNG 223

Query: 214 RLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 230
           RLAMVAMLG FVQA VTH GPIDNLVEHLSNPWHKTIIQTL++S+
Sbjct: 224 RLAMVAMLGFFVQASVTHAGPIDNLVEHLSNPWHKTIIQTLANST 266

[Close]

BLAST of CsGy2G018980 vs. TrEMBL
Match: tr|A0A1U8AQA9|A0A1U8AQA9_NELNU (Chlorophyll a-b binding protein, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LOC104606483 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.8e-87
Identity = 175/264 (66.29%), Postives = 191/264 (72.35%), Query Frame = 0


Query: 1   MAVSFSAATAL-HLHPSSSSYTPLF---NPSQFLRLR-SPSRRTLLIAHAQSEHRQTWLP 60
           MAV+   A  L     SS S T +F   N ++F   R  P+ R+ + A AQ   R TWLP
Sbjct: 1   MAVAMGKAVFLGRCSTSSLSNTAIFRGRNINRFSAARPRPALRSSIAARAQ---RPTWLP 60

Query: 61  GLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVT 120
           GLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVH RFAM GV+G+L TDLLRVT
Sbjct: 61  GLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVT 120

Query: 121 GISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKR--------------------- 180
           GIS LP+WY AGAV++ FA+  TLFIVQL LMGFVETKR                     
Sbjct: 121 GISNLPIWYEAGAVKFEFASTETLFIVQLFLMGFVETKRYMDFTNPGSQAKEGTFFGLEA 180

Query: 181 --------YPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 231
                   YPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTH GPI
Sbjct: 181 ALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHAGPI 240

The following BLAST results are available for this feature:

BLAST of CsGy2G018980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150882.1	8.6e-126	88.80	PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Cucumis sativus] >K...	[more]
XP_008444623.1	6.6e-118	83.46	PREDICTED: photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucum...	[more]
XP_023001834.1	3.5e-103	76.54	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima...	[more]
XP_022951251.1	4.6e-103	76.65	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moscha...	[more]
XP_023536986.1	2.1e-100	74.90	photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita p...	[more]

BLAST of CsGy2G018980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G45474.1	3.4e-84	70.00	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	1.3e-46	41.83	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	2.1e-46	46.38	photosystem I light harvesting complex gene 2	[more]
AT1G19150.1	1.3e-40	41.83	photosystem I light harvesting complex gene 6	[more]
AT1G61520.1	3.4e-36	36.16	photosystem I light harvesting complex gene 3	[more]

BLAST of CsGy2G018980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C639\|LHCA5_ARATH	6.1e-83	70.00	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
sp\|P10708\|CB12_SOLLC	7.8e-46	44.75	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
sp\|P27521\|CA4_ARATH	2.3e-45	41.83	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q9SQL2\|CB24_PEA	3.0e-45	46.80	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
sp\|Q9SYW8\|LHCA2_ARATH	3.9e-45	46.38	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]

BLAST of CsGy2G018980 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRB4\|A0A0A0LRB4_CUCSA	5.7e-126	88.80	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
tr\|A0A1S3BBL1\|A0A1S3BBL1_CUCME	4.3e-118	83.46	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2N9FZC5\|A0A2N9FZC5_FAGSY	6.1e-88	65.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20241 PE=4 SV=1	[more]
tr\|A0A0F7H094\|A0A0F7H094_9ROSI	6.8e-87	70.67	Chlorophyll a-b binding protein, chloroplastic OS=Pelargonium transvaalense OX=1...	[more]
tr\|A0A1U8AQA9\|A0A1U8AQA9_NELNU	6.8e-87	66.29	Chlorophyll a-b binding protein, chloroplastic OS=Nelumbo nucifera OX=4432 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0009765	photosynthesis, light harvesting

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009409	response to cold
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009645	response to low light intensity stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009782	photosystem I antenna complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0031409	pigment binding
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G018980.1	CsGy2G018980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	G3DSA:1.10.3460.10		coord: 51..229 e-value: 5.6E-58 score: 197.9
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..199 e-value: 4.6E-42 score: 144.2
None	No IPR available	PANTHER	PTHR21649:SF23	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 36..155
None	No IPR available	PANTHER	PTHR21649:SF23	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 155..226
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 47..227
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 36..155
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 155..226

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G018980	Cla022573	Watermelon (97103) v1	cgybwmB108
CsGy2G018980	Csa2G357290	Cucumber (Chinese Long) v2	cgybcuB057
CsGy2G018980	MELO3C010859	Melon (DHL92) v3.5.1	cgybmeB102
CsGy2G018980	ClCG08G015950	Watermelon (Charleston Gray)	cgybwcgB155
CsGy2G018980	CSPI02G19090	Wild cucumber (PI 183967)	cgybcpiB057
CsGy2G018980	CmaCh12G005510	Cucurbita maxima (Rimu)	cgybcmaB179
CsGy2G018980	CmoCh12G004950	Cucurbita moschata (Rifu)	cgybcmoB171
CsGy2G018980	Lsi08G014720	Bottle gourd (USVL1VR-Ls)	cgyblsiB129
CsGy2G018980	Cp4.1LG07g05190	Cucurbita pepo (Zucchini)	cgybcpeB270
CsGy2G018980	MELO3C010859.2	Melon (DHL92) v3.6.1	cgybmedB101
CsGy2G018980	CsaV3_2G027790	Cucumber (Chinese Long) v3	cgybcucB065
CsGy2G018980	Cla97C08G159510	Watermelon (97103) v2	cgybwmbB156
CsGy2G018980	Bhi04G000321	Wax gourd	cgybwgoB157
CsGy2G018980	Carg26151	Silver-seed gourd	carcgybB0086

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G018980	Wild cucumber (PI 183967)	cgybcpiB074
CsGy2G018980	Wild cucumber (PI 183967)	cgybcpiB088
CsGy2G018980	Silver-seed gourd	carcgybB0195
CsGy2G018980	Silver-seed gourd	carcgybB0766
CsGy2G018980	Cucumber (Chinese Long) v3	cgybcucB081
CsGy2G018980	Watermelon (97103) v2	cgybwmbB127
CsGy2G018980	Wax gourd	cgybwgoB190
CsGy2G018980	Cucumber (Gy14) v2	cgybcgybB056
CsGy2G018980	Cucumber (Gy14) v2	cgybcgybB073
CsGy2G018980	Cucurbita maxima (Rimu)	cgybcmaB147
CsGy2G018980	Cucurbita maxima (Rimu)	cgybcmaB158
CsGy2G018980	Cucurbita maxima (Rimu)	cgybcmaB210
CsGy2G018980	Cucurbita maxima (Rimu)	cgybcmaB199
CsGy2G018980	Cucurbita maxima (Rimu)	cgybcmaB250
CsGy2G018980	Cucurbita moschata (Rifu)	cgybcmoB138
CsGy2G018980	Cucurbita moschata (Rifu)	cgybcmoB156
CsGy2G018980	Cucurbita moschata (Rifu)	cgybcmoB193
CsGy2G018980	Cucurbita moschata (Rifu)	cgybcmoB238
CsGy2G018980	Cucurbita pepo (Zucchini)	cgybcpeB161
CsGy2G018980	Cucurbita pepo (Zucchini)	cgybcpeB186
CsGy2G018980	Cucurbita pepo (Zucchini)	cgybcpeB224
CsGy2G018980	Cucurbita pepo (Zucchini)	cgybcpeB237
CsGy2G018980	Cucurbita pepo (Zucchini)	cgybcpeB254
CsGy2G018980	Cucumber (Chinese Long) v2	cgybcuB073
CsGy2G018980	Cucumber (Chinese Long) v2	cgybcuB087
CsGy2G018980	Bottle gourd (USVL1VR-Ls)	cgyblsiB103
CsGy2G018980	Bottle gourd (USVL1VR-Ls)	cgyblsiB104
CsGy2G018980	Melon (DHL92) v3.5.1	cgybmeB090
CsGy2G018980	Melon (DHL92) v3.5.1	cgybmeB128
CsGy2G018980	Melon (DHL92) v3.6.1	cgybmedB087
CsGy2G018980	Melon (DHL92) v3.6.1	cgybmedB127
CsGy2G018980	Watermelon (Charleston Gray)	cgybwcgB125
CsGy2G018980	Watermelon (Charleston Gray)	cgybwcgB131
CsGy2G018980	Watermelon (97103) v1	cgybwmB119
CsGy2G018980	Watermelon (97103) v1	cgybwmB142