Cp4.1LG07g05190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g05190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionChlorophyll a-b binding protein, chloroplastic
LocationCp4.1LG07 : 3138252 .. 3140047 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTTCACTTTCAGCCGCCACATCCTTCCATCTCCTGCCCTCTTCTTCATTTTACAGTTCCTCATTGAGCCCCAAACAACACCTCCTCCGATCACCCTCCCGCCGCACAGTAATAGCTCAAGCTCAATCTCAATCTCAATCTCAGCCTCGCCAAACATGGCTTCCCGGCCTCGACCCTCCACCGCATCTCGACGGAACCCTCGCCGGAGATTTTGGGTTCGACCCACTTGGGCTCGGCGAAGACCCACATAGCTTGAAGTGGTTCGTCCAAGCAGAGCTAGTTCATTCTCGCTTCGCCATGCTTGGCGTCTCTGGAATTCTCCTCACAGATGTCTGTAACTAAAAATTCAATCCCATTATCGAATTCAATCTTGAATTTCAATAAATTTACAAAGATTTTGTGTTCTTCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAGCTGCTTCGTGTAACAGGAATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAATAAGGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTCGAACTCTTACTTATCTGTAACATCATGTGTGTGGCTGTGTATTCATTTGTTCTGTTTTTGTAGGTTTGTGGAAACTAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGGACTTTCTTTGGATTAGAATCCGCTTTCGAAGGACTCGAGCCCGGGTAACGAACCTTTCGTCTATTCTTAAATGTGTATTTGGTCGTTTCTCTAAGAAACTCATAGAAATAAACTAGATCTAAATTATGGTAATAACGAGGTGTAATTAGAGTAAGAGAAGAAAAACACGAGCGAAGACGACAATAATTGTAACAGCCCAAGCCCACTGTTAGCTGATATTGTCCGTTTTGGCCCCTTACATATCGCGTTAGTGTCACGGTTTTAAAACACATATGTTAGGGAGAGGTTTCCACACCCTTTATAAGAAATGTTTTGTTCCACTCTTCAACTAACGTGGGATCTCACAATCCACCCCCTTAGGAGCTCAATGTCTTCTTCGCTAGTACACTGCCCGGTGTCTGGTTCTGATTCCATTTGTAATAGCTTAAGCCTACCGCTAACAGATATTGTCCACTTTGGCTCGTACATATCGCTGTCAGCCTCACGATTTTTAAAAGGAGTGAAACACAAGGATTTCCCAGGTGTTCACCCAACTTAGTACTACTCTCGTCCAAGCACGTTCAACTGTAAAATCCTGATAGTATTCGGTGCATTAGTTCTGATATGATCACACCCACATCGGTTCGAGGGGAGTGTGAAAATCTCTCCCTAATAAACGCGTTTTAAAAACTTTGAGGGAAAGCTTGGAAGAGAAAGTCTAAACAGGACAATATCTGCTAGCAATGGGTATCCAGATTACAATAGAGCACACAAACACTTATCTTGTGGAACTTATCTCATGGATTGAACTTCCTTGCAGATACCCAGGGGGTCCTCTGCTAAATCCTCTGGGTCTGGCTAAAGATATCAAGAACGCACATGAGTGGAAGCTGAAGGAGATAAAGAATGGTTAAGTTTTGCACTCATTTTTGGTCTATTGCTTCGTGTTCGTTTTCCCAGACTACTAATCTTGGTTGCTTCAAATTCCAGGACGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCTTATGTAACTCAAACAGGGCCAATAGACAACCTTGTGGAGCACCTTTCTAATCCATGGCACAACACTATTATCCACACCCTCTCCAGCTAG

mRNA sequence

ATGGCGGTTTCACTTTCAGCCGCCACATCCTTCCATCTCCTGCCCTCTTCTTCATTTTACAGTTCCTCATTGAGCCCCAAACAACACCTCCTCCGATCACCCTCCCGCCGCACAGTAATAGCTCAAGCTCAATCTCAATCTCAATCTCAGCCTCGCCAAACATGGCTTCCCGGCCTCGACCCTCCACCGCATCTCGACGGAACCCTCGCCGGAGATTTTGGGTTCGACCCACTTGGGCTCGGCGAAGACCCACATAGCTTGAAGTGGTTCGTCCAAGCAGAGCTAGTTCATTCTCGCTTCGCCATGCTTGGCGTCTCTGGAATTCTCCTCACAGATCTGCTTCGTGTAACAGGAATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAATAAGGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACTAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGGACTTTCTTTGGATTAGAATCCGCTTTCGAAGGACTCGAGCCCGGATACCCAGGGGGTCCTCTGCTAAATCCTCTGGGTCTGGCTAAAGATATCAAGAACGCACATGAGTGGAAGCTGAAGGAGATAAAGAATGGACGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCTTATGTAACTCAAACAGGGCCAATAGACAACCTTGTGGAGCACCTTTCTAATCCATGGCACAACACTATTATCCACACCCTCTCCAGCTAG

Coding sequence (CDS)

ATGGCGGTTTCACTTTCAGCCGCCACATCCTTCCATCTCCTGCCCTCTTCTTCATTTTACAGTTCCTCATTGAGCCCCAAACAACACCTCCTCCGATCACCCTCCCGCCGCACAGTAATAGCTCAAGCTCAATCTCAATCTCAATCTCAGCCTCGCCAAACATGGCTTCCCGGCCTCGACCCTCCACCGCATCTCGACGGAACCCTCGCCGGAGATTTTGGGTTCGACCCACTTGGGCTCGGCGAAGACCCACATAGCTTGAAGTGGTTCGTCCAAGCAGAGCTAGTTCATTCTCGCTTCGCCATGCTTGGCGTCTCTGGAATTCTCCTCACAGATCTGCTTCGTGTAACAGGAATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAATAAGGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACTAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGGACTTTCTTTGGATTAGAATCCGCTTTCGAAGGACTCGAGCCCGGATACCCAGGGGGTCCTCTGCTAAATCCTCTGGGTCTGGCTAAAGATATCAAGAACGCACATGAGTGGAAGCTGAAGGAGATAAAGAATGGACGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCTTATGTAACTCAAACAGGGCCAATAGACAACCTTGTGGAGCACCTTTCTAATCCATGGCACAACACTATTATCCACACCCTCTCCAGCTAG

Protein sequence

MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVIAQAQSQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTLSS
Homology
[Close]
BLAST of Cp4.1LG07g05190 vs. Swiss-Prot
Match: LHCA5_ARATH (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 7.4e-98
Identity = 168/206 (81.55%), Postives = 185/206 (89.81%), Query Frame = 1 

Query: 52  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLT 111
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP SLKW+VQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 112 DLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 171
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 172 -FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAY 231
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAH+WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 232 VTQTGPIDNLVEHLSNPWHNTIIHTL 257
           VT TGPIDNLVEHLSNPWH TII TL
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]
BLAST of Cp4.1LG07g05190 vs. Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.3e-53
Identity = 106/202 (52.48%), Postives = 138/202 (68.32%), Query Frame = 1 

Query: 55  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLL 114
           WLPGL  P +L G+L GD GFDPLGL EDP +L+WFVQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 115 RVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 174
              GI  +P WY AG  EY FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF-- 175

Query: 175 LESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQT 234
            + +    E GYPGG + NPL  A  +    E K KEI NGRLAM+A LG  +Q  VT  
Sbjct: 176 KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGK 235

Query: 235 GPIDNLVEHLSNPWHNTIIHTL 257
           GP DNL++H+S+PWHNTI+ TL
Sbjct: 236 GPFDNLLQHISDPWHNTIVQTL 249

[Close]
BLAST of Cp4.1LG07g05190 vs. Swiss-Prot
Match: CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.5e-53
Identity = 108/217 (49.77%), Postives = 143/217 (65.90%), Query Frame = 1 

Query: 41  AQAQSQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF 100
           A+  S      +  WLPGL  P +L G+LAGD GFDPLGL EDP +LKWFVQAELV+ R+
Sbjct: 43  AKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRW 102

Query: 101 AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDF 160
           AMLGV+G+LL ++    GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D 
Sbjct: 103 AMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDI 162

Query: 161 KSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMV 220
           K+PGS  Q+  F   + +    E GYPGG + NPL  A       E K KE+ NGRLAM+
Sbjct: 163 KNPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAML 222

Query: 221 AMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTLS 258
           A LG  VQ  VT  GP +NL++HLS+PWHNTI+ T +
Sbjct: 223 AFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251

[Close]
BLAST of Cp4.1LG07g05190 vs. Swiss-Prot
Match: LHCA2_ARATH (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.8e-50
Identity = 113/253 (44.66%), Postives = 147/253 (58.10%), Query Frame = 1 

Query: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVIAQAQSQSQSQPRQTWLPGLD 60
           MA SL A+++   + S SF        +  L  P+     A  ++ +    R  W PG  
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGST 60

Query: 61  PPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGIS 120
           PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VH R+AMLG +GI + + L   GI 
Sbjct: 61  PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120

Query: 121 ELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFE 180
             P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS   +  F    +   
Sbjct: 121 NTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--PNNKLT 180

Query: 181 GLEPGYPGGPLLNPLGLAK-DIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDN 240
           G + GYPGG   +PLG          E + KEIKNGRLAM+A++G + Q   T TGPIDN
Sbjct: 181 GTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 240

Query: 241 LVEHLSNPWHNTI 253
           L  HL++P H TI
Sbjct: 241 LFAHLADPGHATI 250

[Close]
BLAST of Cp4.1LG07g05190 vs. Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.7e-49
Identity = 103/207 (49.76%), Postives = 127/207 (61.35%), Query Frame = 1 

Query: 52  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLT 111
           R  W PG  PPP LDG+L GDFGFDPLGL  DP SL+W  QAELVH R+AMLG +GI + 
Sbjct: 65  RPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIP 124

Query: 112 DLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 171
           +LL   GI   P WY AG  EY F +  TLFIV+L+L+G+ E +R+ D   PG    +  
Sbjct: 125 ELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPI 184

Query: 172 FFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHEWKLKEIKNGRLAMVAMLGIFVQAY 231
           F    +   G + GYPGG   +PLG          E + KEIKNGRLAM+A++G + Q  
Sbjct: 185 F--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 244

Query: 232 VTQTGPIDNLVEHLSNPWHNTIIHTLS 258
            T TGPIDNL  HL++P H TI    S
Sbjct: 245 YTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]
BLAST of Cp4.1LG07g05190 vs. TrEMBL
Match: A0A0A0LRB4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 7.9e-123
Identity = 223/259 (86.10%), Postives = 237/259 (91.51%), Query Frame = 1 

Query: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVIAQAQSQSQSQPRQTWLPGL 60
           MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT++    + +QS+ RQTWLPGL
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI---AHAQSEHRQTWLPGL 60

Query: 61  DPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGI 120
           DPPPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGI
Sbjct: 61  DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGI 120

Query: 121 SELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAF 180
           SELPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AF
Sbjct: 121 SELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF 180

Query: 181 EGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDN 240
           +GLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDN
Sbjct: 181 KGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDN 240

Query: 241 LVEHLSNPWHNTIIHTLSS 259
           LVEHLSNPWH TII TLSS
Sbjct: 241 LVEHLSNPWHKTIIQTLSS 256

[Close]
BLAST of Cp4.1LG07g05190 vs. TrEMBL
Match: M5XBA3_PRUPE (Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa010039mg PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.8e-103
Identity = 178/216 (82.41%), Postives = 200/216 (92.59%), Query Frame = 1 

Query: 43  AQSQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM 102
           A+  + +Q R TWLPGLDPPP+LDG+LAGDFGFDPLGLGEDP SL+W+VQAELVH+RFAM
Sbjct: 48  ARHVAHAQLRPTWLPGLDPPPYLDGSLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 107

Query: 103 LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKS 162
           LGV+GILLTDLLRVTG+  +PVWY AGAV++GFAN ETLF+VQL+LMGFVETKRYMDFKS
Sbjct: 108 LGVAGILLTDLLRVTGLLSIPVWYKAGAVKFGFANTETLFLVQLILMGFVETKRYMDFKS 167

Query: 163 PGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM 222
           PGSQAQ+G+FFGLE+A EGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM
Sbjct: 168 PGSQAQDGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM 227

Query: 223 LGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTLSS 259
           LGIFVQA +T  GPIDNLVEHLSNPWH TI+ TL++
Sbjct: 228 LGIFVQASITHVGPIDNLVEHLSNPWHRTIVQTLAN 263

[Close]
BLAST of Cp4.1LG07g05190 vs. TrEMBL
Match: A0A151TBT1_CAJCA (Chlorophyll a-b binding protein, chloroplastic OS=Cajanus cajan GN=KK1_019110 PE=3 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.7e-101
Identity = 189/260 (72.69%), Postives = 214/260 (82.31%), Query Frame = 1 

Query: 3   VSLSAATSFHLLPSSSFYSSSL---SPKQHLLRSPSRRTVIAQA-QSQSQSQPRQTWLPG 62
           ++++   SF + P S F S SL   SP   L       T+  +  Q+   +Q R TWLPG
Sbjct: 1   MAVAIGRSFSIQPRSIFNSKSLDRPSPAARLSWLGHAATITPRCRQTCVAAQQRPTWLPG 60

Query: 63  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 122
           LDPPPHLDGTL GDFGFDPLGL EDP SL+W+VQAELVHSRFAMLGV GIL+TDLLRVTG
Sbjct: 61  LDPPPHLDGTLVGDFGFDPLGLAEDPESLRWYVQAELVHSRFAMLGVLGILVTDLLRVTG 120

Query: 123 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 182
           IS++PVW+ AGAV+Y  AN ETLF+VQL+LMGFVETKRYMDF SPGSQA+EG+FFGLE++
Sbjct: 121 ISKIPVWFEAGAVKYDLANTETLFLVQLILMGFVETKRYMDFVSPGSQAKEGSFFGLEAS 180

Query: 183 FEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 242
            EGLEPGYPGGPLLNPLGLAKDIKN+H+WKLKEIKNGRLAMVAMLGIFVQA VT  GPID
Sbjct: 181 LEGLEPGYPGGPLLNPLGLAKDIKNSHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 240

Query: 243 NLVEHLSNPWHNTIIHTLSS 259
           NLVEHLSNPWH TII TL+S
Sbjct: 241 NLVEHLSNPWHKTIIQTLAS 260

[Close]
BLAST of Cp4.1LG07g05190 vs. TrEMBL
Match: A0A061FAU5_THECC (Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_033843 PE=3 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 2.9e-101
Identity = 187/253 (73.91%), Postives = 209/253 (82.61%), Query Frame = 1 

Query: 6   SAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVIAQAQSQSQSQPRQTWLPGLDPPPHL 65
           S+++ FH    +  Y  SL     L  + + R      Q   Q+Q R TWLPGLDPPP+L
Sbjct: 16  SSSSIFH----NKIYKPSLGAASTLWSTSAPRRY---GQIAVQAQQRPTWLPGLDPPPYL 75

Query: 66  DGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVW 125
           DGTLAGD+GFDPLGLGEDP SLKW+VQAELVH+RFAM GV+GIL TDLLRVTGIS LPVW
Sbjct: 76  DGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGILFTDLLRVTGISNLPVW 135

Query: 126 YNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPG 185
           Y AGAV++ FA+  TL +VQLLLMGFVETKRYMDF SPGSQA+EG+FFGLE+A EGLEPG
Sbjct: 136 YEAGAVKFDFASTGTLIVVQLLLMGFVETKRYMDFISPGSQAKEGSFFGLEAALEGLEPG 195

Query: 186 YPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLS 245
           YPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAM+AMLGIFVQAYVT  GPIDNLVEHLS
Sbjct: 196 YPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMIAMLGIFVQAYVTHAGPIDNLVEHLS 255

Query: 246 NPWHNTIIHTLSS 259
           NPWH TII TL++
Sbjct: 256 NPWHKTIIQTLAN 261

[Close]
BLAST of Cp4.1LG07g05190 vs. TrEMBL
Match: A0A0F7GYJ2_9ROSI (Chlorophyll a-b binding protein, chloroplastic OS=Francoa sonchifolia GN=LHCA5 PE=2 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 6.5e-101
Identity = 179/242 (73.97%), Postives = 206/242 (85.12%), Query Frame = 1 

Query: 17  SSFYSSSLSPKQHLLRSPSRRTVIAQAQSQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFD 76
           S F  +S+ P +  +   + RT +       ++Q R TWLPGLDPPP+LDGTLAGDFGFD
Sbjct: 30  SLFLKNSIFPAKSRITQRNYRTTV-------RAQERPTWLPGLDPPPYLDGTLAGDFGFD 89

Query: 77  PLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFA 136
           PLGLGE+P SLKW+VQAELVH+RFAM  V+GILLTDLLRVTGIS LPVWY AGAV++ FA
Sbjct: 90  PLGLGENPESLKWYVQAELVHARFAMAAVAGILLTDLLRVTGISNLPVWYEAGAVKFKFA 149

Query: 137 NKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLG 196
           N +TLF+VQL+LMGFVETKRYMDFK+PGSQA++G F G+E++ EGLEPGYPGGPL NPLG
Sbjct: 150 NTQTLFLVQLILMGFVETKRYMDFKNPGSQARDGPFLGIEASLEGLEPGYPGGPLFNPLG 209

Query: 197 LAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTL 256
           LAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVT  GPIDNLVEHLSNPWH TI+ TL
Sbjct: 210 LAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTHVGPIDNLVEHLSNPWHRTIVQTL 264

Query: 257 SS 259
           ++
Sbjct: 270 AN 264

[Close]
BLAST of Cp4.1LG07g05190 vs. TAIR10
Match: AT1G45474.1 (AT1G45474.1 photosystem I light harvesting complex gene 5)

HSP 1 Score: 358.2 bits (918), Expect = 4.2e-99
Identity = 168/206 (81.55%), Postives = 185/206 (89.81%), Query Frame = 1 

Query: 52  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLT 111
           R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP SLKW+VQAELVHSRFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 112 DLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGT 171
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+EG+
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 172 -FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAY 231
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAH+WKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 232 VTQTGPIDNLVEHLSNPWHNTIIHTL 257
           VT TGPIDNLVEHLSNPWH TII TL
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTL 251

[Close]
BLAST of Cp4.1LG07g05190 vs. TAIR10
Match: AT3G47470.1 (AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 208.4 bits (529), Expect = 5.4e-54
Identity = 108/217 (49.77%), Postives = 143/217 (65.90%), Query Frame = 1 

Query: 41  AQAQSQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF 100
           A+  S      +  WLPGL  P +L G+LAGD GFDPLGL EDP +LKWFVQAELV+ R+
Sbjct: 43  AKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRW 102

Query: 101 AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDF 160
           AMLGV+G+LL ++    GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D 
Sbjct: 103 AMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDI 162

Query: 161 KSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMV 220
           K+PGS  Q+  F   + +    E GYPGG + NPL  A       E K KE+ NGRLAM+
Sbjct: 163 KNPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAML 222

Query: 221 AMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTLS 258
           A LG  VQ  VT  GP +NL++HLS+PWHNTI+ T +
Sbjct: 223 AFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251

[Close]
BLAST of Cp4.1LG07g05190 vs. TAIR10
Match: AT3G61470.1 (AT3G61470.1 photosystem I light harvesting complex gene 2)

HSP 1 Score: 199.1 bits (505), Expect = 3.3e-51
Identity = 113/253 (44.66%), Postives = 147/253 (58.10%), Query Frame = 1 

Query: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVIAQAQSQSQSQPRQTWLPGLD 60
           MA SL A+++   + S SF        +  L  P+     A  ++ +    R  W PG  
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGST 60

Query: 61  PPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGIS 120
           PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VH R+AMLG +GI + + L   GI 
Sbjct: 61  PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120

Query: 121 ELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFE 180
             P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS   +  F    +   
Sbjct: 121 NTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF--PNNKLT 180

Query: 181 GLEPGYPGGPLLNPLGLAK-DIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDN 240
           G + GYPGG   +PLG          E + KEIKNGRLAM+A++G + Q   T TGPIDN
Sbjct: 181 GTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 240

Query: 241 LVEHLSNPWHNTI 253
           L  HL++P H TI
Sbjct: 241 LFAHLADPGHATI 250

[Close]
BLAST of Cp4.1LG07g05190 vs. TAIR10
Match: AT1G61520.1 (AT1G61520.1 photosystem I light harvesting complex gene 3)

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-44
Identity = 93/225 (41.33%), Postives = 132/225 (58.67%), Query Frame = 1 

Query: 48  QSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSL------KWFVQAELVHSRFA 107
           Q   R  W        +LDG+L GD+GFDPLGL  DP         +W    E+++ RFA
Sbjct: 49  QGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFA 108

Query: 108 MLGVSGILLTDLLRVTGI----SELPVWYNAGAVEYG-----FANKETLFIVQLLLMGFV 167
           MLG +G +  ++L   G+    + LP W+  G +        +A+  TLF++++ LMGF 
Sbjct: 109 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 168

Query: 168 ETKRYMDFKSPGSQAQEGTFFGLESAFEGL-EPGYPGGPLLNPLGLAKDIKNAHEWKLKE 227
           E +R  D+ +PGS  ++  F GLE    G   P YPGGP  NPLG  KD K+  E KLKE
Sbjct: 169 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 228

Query: 228 IKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTL 257
           +KNGRLAM+A+LG F+Q  VT  GP  NL++HL++P +N ++ +L
Sbjct: 229 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

[Close]
BLAST of Cp4.1LG07g05190 vs. TAIR10
Match: AT1G19150.1 (AT1G19150.1 photosystem I light harvesting complex gene 6)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-43
Identity = 108/272 (39.71%), Postives = 153/272 (56.25%), Query Frame = 1 

Query: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPS-------RRTVIAQAQSQSQS--QP 60
           MA ++++A +  L  S+S   +    + H+  + S        R V+ +A  +  S  +P
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  ----RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSG 120
               R  W PG  PP  LDG+L GDFGFDPLGLG DP +LKWF QAEL+HSR+AML V+G
Sbjct: 61  LPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120

Query: 121 ILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQA 180
           I++ + L   G  E   WY+AG+ EY FA+  TLF+ Q++LMG+ E +R+ D   PGS  
Sbjct: 121 IIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLIKPGSVD 180

Query: 181 QEGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHEWKLKEIKNGRLAMVAMLGIF 240
            E  +          + GYPGG   + +   +   +     + KEIKNGRLAM+A LG  
Sbjct: 181 IEPKY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFC 240

Query: 241 VQAYVTQTGPIDNLVEHLSNPWHNTIIHTLSS 259
            QA  T   PI+NL+ HL++P H  +    +S
Sbjct: 241 FQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]
BLAST of Cp4.1LG07g05190 vs. NCBI nr
Match: gi|449466336|ref|XP_004150882.1| (PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 448.0 bits (1151), Expect = 1.1e-122
Identity = 223/259 (86.10%), Postives = 237/259 (91.51%), Query Frame = 1 

Query: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVIAQAQSQSQSQPRQTWLPGL 60
           MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT++    + +QS+ RQTWLPGL
Sbjct: 1   MAVSFSAATALHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLI---AHAQSEHRQTWLPGL 60

Query: 61  DPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGI 120
           DPPPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGVSG+LLTDLLRVTGI
Sbjct: 61  DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGI 120

Query: 121 SELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAF 180
           SELPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+AF
Sbjct: 121 SELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAAF 180

Query: 181 EGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDN 240
           +GLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDN
Sbjct: 181 KGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPIDN 240

Query: 241 LVEHLSNPWHNTIIHTLSS 259
           LVEHLSNPWH TII TLSS
Sbjct: 241 LVEHLSNPWHKTIIQTLSS 256

[Close]
BLAST of Cp4.1LG07g05190 vs. NCBI nr
Match: gi|659087761|ref|XP_008444623.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo])

HSP 1 Score: 436.0 bits (1120), Expect = 4.5e-119
Identity = 216/260 (83.08%), Postives = 234/260 (90.00%), Query Frame = 1 

Query: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHL--LRSPSRRTVIAQAQSQSQSQPRQTWLPG 60
           MAVS+SAAT FHL PSSS ++   +P      LRSPSR +++    + +QS+ RQTWLPG
Sbjct: 1   MAVSISAATPFHLHPSSSSHTPLFNPTNQFVRLRSPSRPSLLI---AHAQSEHRQTWLPG 60

Query: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 120
           LDPPP+LDGTL GDFGFDPLGLGEDP SLKW+VQAELVH RFAMLGV+G+LLTDLLRVTG
Sbjct: 61  LDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVTG 120

Query: 121 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180
           ISELPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE+A
Sbjct: 121 ISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           FEGLEPGYPGGPLLNPLG+AKD+KNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPID
Sbjct: 181 FEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPID 240

Query: 241 NLVEHLSNPWHNTIIHTLSS 259
           NLVEHLSNPWH TII TLSS
Sbjct: 241 NLVEHLSNPWHKTIIQTLSS 257

[Close]
BLAST of Cp4.1LG07g05190 vs. NCBI nr
Match: gi|596132569|ref|XP_007222188.1| (hypothetical protein PRUPE_ppa010039mg [Prunus persica])

HSP 1 Score: 383.6 bits (984), Expect = 2.6e-103
Identity = 178/216 (82.41%), Postives = 200/216 (92.59%), Query Frame = 1 

Query: 43  AQSQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM 102
           A+  + +Q R TWLPGLDPPP+LDG+LAGDFGFDPLGLGEDP SL+W+VQAELVH+RFAM
Sbjct: 48  ARHVAHAQLRPTWLPGLDPPPYLDGSLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 107

Query: 103 LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKS 162
           LGV+GILLTDLLRVTG+  +PVWY AGAV++GFAN ETLF+VQL+LMGFVETKRYMDFKS
Sbjct: 108 LGVAGILLTDLLRVTGLLSIPVWYKAGAVKFGFANTETLFLVQLILMGFVETKRYMDFKS 167

Query: 163 PGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM 222
           PGSQAQ+G+FFGLE+A EGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM
Sbjct: 168 PGSQAQDGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM 227

Query: 223 LGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTLSS 259
           LGIFVQA +T  GPIDNLVEHLSNPWH TI+ TL++
Sbjct: 228 LGIFVQASITHVGPIDNLVEHLSNPWHRTIVQTLAN 263

[Close]
BLAST of Cp4.1LG07g05190 vs. NCBI nr
Match: gi|645226824|ref|XP_008220221.1| (PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Prunus mume])

HSP 1 Score: 382.5 bits (981), Expect = 5.9e-103
Identity = 177/216 (81.94%), Postives = 200/216 (92.59%), Query Frame = 1 

Query: 43  AQSQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM 102
           A+  + +Q R TWLPGLDPPP+LDG+LAGDFGFDPLGLGEDP SL+W+VQAELVH+RFAM
Sbjct: 48  ARHVAHAQLRPTWLPGLDPPPYLDGSLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAM 107

Query: 103 LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKS 162
           LGV+GILLTDLLRVTG+  +PVWY AGAV++GFAN ETLF+VQL+LMGFVETKRYMDFKS
Sbjct: 108 LGVAGILLTDLLRVTGLLSIPVWYKAGAVKFGFANTETLFLVQLILMGFVETKRYMDFKS 167

Query: 163 PGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM 222
           PGSQAQ+G+FFGLE+A EGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM
Sbjct: 168 PGSQAQDGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAM 227

Query: 223 LGIFVQAYVTQTGPIDNLVEHLSNPWHNTIIHTLSS 259
           LGIFVQA +T  GPIDNL+EHLSNPWH TI+ TL++
Sbjct: 228 LGIFVQASITHVGPIDNLMEHLSNPWHRTIVQTLAN 263

[Close]
BLAST of Cp4.1LG07g05190 vs. NCBI nr
Match: gi|719969964|ref|XP_010270018.1| (PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 378.6 bits (971), Expect = 8.5e-102
Identity = 187/257 (72.76%), Postives = 211/257 (82.10%), Query Frame = 1 

Query: 1   MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVIAQAQSQSQSQPRQTWLPGLD 60
           MAV++  A       +SS  ++++   +++ R  + R   A   S +    R TWLPGLD
Sbjct: 1   MAVAMGKAVFLGRCSTSSLSNTAIFRGRNINRFSAARPRPALRSSIAARAQRPTWLPGLD 60

Query: 61  PPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGIS 120
           PPPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH+RFAM GV+GIL TDLLRVTGIS
Sbjct: 61  PPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIS 120

Query: 121 ELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESAFE 180
            LP+WY AGAV++ FA+ ETLFIVQL LMGFVETKRYMDF +PGSQA+EGTFFGLE+A E
Sbjct: 121 NLPIWYEAGAVKFEFASTETLFIVQLFLMGFVETKRYMDFTNPGSQAKEGTFFGLEAALE 180

Query: 181 GLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL 240
           GLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT  GPIDNL
Sbjct: 181 GLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHAGPIDNL 240

Query: 241 VEHLSNPWHNTIIHTLS 258
           V HLSNPWH T+I  LS
Sbjct: 241 VTHLSNPWHRTVIQILS 257

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g05190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LHCA5_ARATH7.4e-9881.55Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th... [more]
CB24_PEA3.3e-5352.48Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE... [more]
CA4_ARATH9.5e-5349.77Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA... [more]
LHCA2_ARATH5.8e-5044.66Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th... [more]
CB12_SOLLC3.7e-4949.76Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7... [more]
BLAST of Cp4.1LG07g05190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB4_CUCSA7.9e-12386.10Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_2G35729... [more]
M5XBA3_PRUPE1.8e-10382.41Chlorophyll a-b binding protein, chloroplastic OS=Prunus persica GN=PRUPE_ppa010... [more]
A0A151TBT1_CAJCA1.7e-10172.69Chlorophyll a-b binding protein, chloroplastic OS=Cajanus cajan GN=KK1_019110 PE... [more]
A0A061FAU5_THECC2.9e-10173.91Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_033843 ... [more]
A0A0F7GYJ2_9ROSI6.5e-10173.97Chlorophyll a-b binding protein, chloroplastic OS=Francoa sonchifolia GN=LHCA5 P... [more]
BLAST of Cp4.1LG07g05190 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G45474.14.2e-9981.55 photosystem I light harvesting complex gene 5[more]
AT3G47470.15.4e-5449.77 light-harvesting chlorophyll-protein complex I subunit A4[more]
AT3G61470.13.3e-5144.66 photosystem I light harvesting complex gene 2[more]
AT1G61520.13.8e-4441.33 photosystem I light harvesting complex gene 3[more]
AT1G19150.11.5e-4339.71 photosystem I light harvesting complex gene 6[more]
BLAST of Cp4.1LG07g05190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466336|ref|XP_004150882.1|1.1e-12286.10PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Cucumis sativus][more]
gi|659087761|ref|XP_008444623.1|4.5e-11983.08PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Cucumis melo][more]
gi|596132569|ref|XP_007222188.1|2.6e-10382.41hypothetical protein PRUPE_ppa010039mg [Prunus persica][more]
gi|645226824|ref|XP_008220221.1|5.9e-10381.94PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Prunus mume][more]
gi|719969964|ref|XP_010270018.1|8.5e-10272.76PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0009644 response to high light intensity
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009645 response to low light intensity stimulus
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0009409 response to cold
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009782 photosystem I antenna complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0031409 pigment binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g05190.1Cp4.1LG07g05190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 1..258
score: 7.6E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 61..229
score: 4.8
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 53..254
score: 6.5
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 47..256
score: 1.05
NoneNo IPR availablePANTHERPTHR21649:SF23SUBFAMILY NOT NAMEDcoord: 1..258
score: 7.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g05190Cucsa.232950Cucumber (Gy14) v1cgycpeB0614
Cp4.1LG07g05190CmaCh12G005510Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g05190CmoCh12G004950Cucurbita moschata (Rifu)cmocpeB174
Cp4.1LG07g05190Cla022573Watermelon (97103) v1cpewmB782
Cp4.1LG07g05190Csa2G357290Cucumber (Chinese Long) v2cpecuB819
Cp4.1LG07g05190MELO3C010859Melon (DHL92) v3.5.1cpemeB754
Cp4.1LG07g05190ClCG08G015950Watermelon (Charleston Gray)cpewcgB748
Cp4.1LG07g05190CSPI02G19090Wild cucumber (PI 183967)cpecpiB820
Cp4.1LG07g05190Lsi08G014720Bottle gourd (USVL1VR-Ls)cpelsiB685
Cp4.1LG07g05190MELO3C010859.2Melon (DHL92) v3.6.1cpemedB890
Cp4.1LG07g05190CsaV3_2G027790Cucumber (Chinese Long) v3cpecucB1013
Cp4.1LG07g05190Bhi04G000321Wax gourdcpewgoB1028
Cp4.1LG07g05190CsGy2G018980Cucumber (Gy14) v2cgybcpeB270
Cp4.1LG07g05190Carg26151Silver-seed gourdcarcpeB0113
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g05190Melon (DHL92) v3.6.1cpemedB883
Cp4.1LG07g05190Silver-seed gourdcarcpeB0268
Cp4.1LG07g05190Silver-seed gourdcarcpeB1084
Cp4.1LG07g05190Cucurbita pepo (Zucchini)cpecpeB146
Cp4.1LG07g05190Cucurbita pepo (Zucchini)cpecpeB471
Cp4.1LG07g05190Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG07g05190Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG07g05190Cucurbita maxima (Rimu)cmacpeB797
Cp4.1LG07g05190Cucurbita moschata (Rifu)cmocpeB750
Cp4.1LG07g05190Melon (DHL92) v3.5.1cpemeB784
Cp4.1LG07g05190Cucumber (Gy14) v2cgybcpeB988