Csa2G292820 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G292820
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Rapid alkalinization factor 3; contains IPR008801 (Rapid ALkalinization Factor)
Location	Chr2 : 13818095 .. 13818984 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATAAAAAAAAAATGGAGGGACGCGTAGGGAAGGAGTGAAGAGGTGGGCATTGATTAACCACAGCTGTACTCCAATCACACTCTCACTCTCTTCTCCTCCATCTTCATGTGACATTCATCTCTCTCTCTCTAAACCCCCCCATCTCCTCCTTCTCTCCCTTCCCCAAATCTCCAATGGCTTCCAAATCCCTCCTCTTCCCCCTCTTCACCCTCCTCCTCCTCTTCCTCTCTTCCTCCTCCGCCCACCTCTCCGTCGACACCTCCCTCAAACTCATGGCCGACGCCCTCGAATGGCCCACCACCACTTCCCTCATCCAATCCCCCACTGAAGACGACCTCGACGACGATCTCGACCTACAACAAGACCCCCGCAGATCTCTCTTCTGGAGGCGAGTCCACTACTACATTTCCTACGGTGCCCTCTCCGCCAACCGGATCCCTTGCCCACCCCGCTCCGGCCGCCCTTACTACACTCATAACTGCTACAAAGCTCGTGGCCCTGTCAATCCTTACACCCGCGGCTGCTCCGCCATCACTCGCTGCCGCCGCTGATCTCTCTCTCTCTCTCTTGTAAAACCCCGTCGTATCCCCCCTCTACTCCGAATTTCTTCCTCTCCTCTTTGTTTTGTCGTTTTTTTTTTAGTGCCTTGGAGTTCGACAACGGAGACGACATGTAGTTTTGGGGATTTCCTTATTTTATATTACTTTTTTGTTTATTGTTCCGCAATCTAGGGTCCGGAAAACGACGTGGTTTTGTTGGTTGGCTATTTAATTATGATAATGATGTGTACTTTTATATCTGAACAAGATTATATAAATTCAAGATTGTTTTATCATTATCATTACTTCCTAATTATATTTTAATCATAGATTGATGCTCTAATTAC

mRNA sequence

ATGGCTTCCAAATCCCTCCTCTTCCCCCTCTTCACCCTCCTCCTCCTCTTCCTCTCTTCCTCCTCCGCCCACCTCTCCGTCGACACCTCCCTCAAACTCATGGCCGACGCCCTCGAATGGCCCACCACCACTTCCCTCATCCAATCCCCCACTGAAGACGACCTCGACGACGATCTCGACCTACAACAAGACCCCCGCAGATCTCTCTTCTGGAGGCGAGTCCACTACTACATTTCCTACGGTGCCCTCTCCGCCAACCGGATCCCTTGCCCACCCCGCTCCGGCCGCCCTTACTACACTCATAACTGCTACAAAGCTCGTGGCCCTGTCAATCCTTACACCCGCGGCTGCTCCGCCATCACTCGCTGCCGCCGCTGA

Coding sequence (CDS)

ATGGCTTCCAAATCCCTCCTCTTCCCCCTCTTCACCCTCCTCCTCCTCTTCCTCTCTTCCTCCTCCGCCCACCTCTCCGTCGACACCTCCCTCAAACTCATGGCCGACGCCCTCGAATGGCCCACCACCACTTCCCTCATCCAATCCCCCACTGAAGACGACCTCGACGACGATCTCGACCTACAACAAGACCCCCGCAGATCTCTCTTCTGGAGGCGAGTCCACTACTACATTTCCTACGGTGCCCTCTCCGCCAACCGGATCCCTTGCCCACCCCGCTCCGGCCGCCCTTACTACACTCATAACTGCTACAAAGCTCGTGGCCCTGTCAATCCTTACACCCGCGGCTGCTCCGCCATCACTCGCTGCCGCCGCTGA

Protein sequence

MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAITRCRR*

Homology

[Close]

BLAST of Csa2G292820 vs. Swiss-Prot
Match: RLF34_ARATH (Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-32
Identity = 72/130 (55.38%), Postives = 88/130 (67.69%), Query Frame = 1


Query: 1   MASKSLLFPLFTLLLLFLS-SSSAHLSVDTSLKLMADALEWPTTTS----LIQSPTEDDL 60
           MA+ SL   L   LL F+S   S  LS + SL L+ D  +WP + S    +I      ++
Sbjct: 1   MAASSLNLLLILSLLTFISLQRSESLSDNPSLTLLPDGFDWPISHSDEFDIIDGEESFEV 60

Query: 61  DDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTR 120
            ++ D   D RRSL+WRR  YYISYGALSANR+PCPPRSGR YYTHNC++ARGPV+PY+R
Sbjct: 61  TEEDDGVTD-RRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSR 120

Query: 121 GCSAITRCRR 126
           GCS+ITRCRR
Sbjct: 121 GCSSITRCRR 129

[Close]

BLAST of Csa2G292820 vs. Swiss-Prot
Match: RLF23_ARATH (Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 38/74 (51.35%), Postives = 43/74 (58.11%), Query Frame = 1


Query: 52  EDDLDDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVN 111
           E ++D +++     RR L  RR   YISYGAL  N IPC  R G  YY  NC +     N
Sbjct: 76  EFEMDSEIN-----RRILATRR---YISYGALRRNTIPCS-RRGASYY--NCRRG-AQAN 135

Query: 112 PYTRGCSAITRCRR 126
           PY+RGCSAITRCRR
Sbjct: 136 PYSRGCSAITRCRR 137

[Close]

BLAST of Csa2G292820 vs. Swiss-Prot
Match: RLF22_ARATH (Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1


Query: 52  EDDLDDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVN 111
           E++++ D D+    RR L  ++   YISYGA+  N +PC  R G  YY  NC +     N
Sbjct: 56  EEEMEFDSDIS---RRILAQKK---YISYGAMRRNSVPCS-RRGASYY--NCQRG-AQAN 115

Query: 112 PYTRGCSAITRCRR 126
           PY+RGCS ITRCRR
Sbjct: 116 PYSRGCSTITRCRR 119

[Close]

BLAST of Csa2G292820 vs. Swiss-Prot
Match: RLF33_ARATH (Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-07
Identity = 30/49 (61.22%), Postives = 31/49 (63.27%), Query Frame = 1


Query: 77  YISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAITRCRR 126
           YISYGAL  N +PC  R G  YY  NC +     NPY+RGCSAITRCRR
Sbjct: 72  YISYGALRRNTVPCS-RRGASYY--NCRRG-AQANPYSRGCSAITRCRR 116

[Close]

BLAST of Csa2G292820 vs. Swiss-Prot
Match: RALF_TOBAC (Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-07
Identity = 32/69 (46.38%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 56  DDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTR 115
           +++ +L  +  R +   +   YISYGAL  N +PC  R G  YY  NC K     NPY+R
Sbjct: 52  EEEFELDSESNRRILATKK--YISYGALQKNSVPCS-RRGASYY--NC-KPGAQANPYSR 111

Query: 116 GCSAITRCR 125
           GCSAITRCR
Sbjct: 112 GCSAITRCR 114

[Close]

BLAST of Csa2G292820 vs. TrEMBL
Match: A0A0A0LMS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292820 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 3.9e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLD 60
           MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLD
Sbjct: 1   MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLD 60

Query: 61  LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAI 120
           LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAI
Sbjct: 61  LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAI 120

Query: 121 TRCRR 126
           TRCRR
Sbjct: 121 TRCRR 125

[Close]

BLAST of Csa2G292820 vs. TrEMBL
Match: I1LHE0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G055200 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-36
Identity = 81/122 (66.39%), Postives = 95/122 (77.87%), Query Frame = 1


Query: 10  LFTL-LLLFLSSSSAHLSV-----DTSLKLMADALEWPTTTSLIQSPTEDDLDDDLDLQQ 69
           L TL LLLF  + ++H++V     DT+  LM+DALEWPTT SL     EDD  +D++   
Sbjct: 4   LLTLALLLFCIAFTSHVAVQAHMEDTAFNLMSDALEWPTTMSLYD---EDDAQEDVENAY 63

Query: 70  DPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAITRC 126
             RRSLFWRR+ YYISYGALSANRIPCPPRSGR YYTHNCY+ARGPV+PY+RGCSAITRC
Sbjct: 64  S-RRSLFWRRMKYYISYGALSANRIPCPPRSGRSYYTHNCYRARGPVHPYSRGCSAITRC 121

[Close]

BLAST of Csa2G292820 vs. TrEMBL
Match: V7CF83_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G018200g PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-35
Identity = 81/127 (63.78%), Postives = 95/127 (74.80%), Query Frame = 1


Query: 2   ASKSLLFPLFTLLLLFLSS--SSAHLSVD-TSLKLMADALEWPTTTSLIQSPTEDDLDDD 61
           +S  LL    +LLL FL S     H  +D T+L LM+DAL+WPTT SL     E+D ++D
Sbjct: 3   SSLPLLSLSLSLLLCFLFSHHGGVHAQMDETALNLMSDALDWPTTMSLYDDVDEED-EED 62

Query: 62  LDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCS 121
           ++     RRSLFWRR+ YYISYGALSANRIPCPPRSGR YYTHNCYKARGPV+PY+RGCS
Sbjct: 63  VE-SGFSRRSLFWRRMKYYISYGALSANRIPCPPRSGRSYYTHNCYKARGPVHPYSRGCS 122

Query: 122 AITRCRR 126
            ITRCRR
Sbjct: 123 VITRCRR 127

[Close]

BLAST of Csa2G292820 vs. TrEMBL
Match: W9R4K2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011056 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.9e-35
Identity = 85/129 (65.89%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 1   MASKSL---LFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDD 60
           MAS SL    F  F  + + L SSS     DTSLKLM+DALEWPTT SL      DD DD
Sbjct: 1   MASFSLKLFCFCFFLTIFVTLGSSSLTQLDDTSLKLMSDALEWPTTMSLYDE-LADDEDD 60

Query: 61  DLDLQQDPRRSLFWR-RVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRG 120
             D     RRSLFWR    YYISYGALSANRIPCPPRSGR YYTHNC+KARGPV+PYTRG
Sbjct: 61  GDDGDFVDRRSLFWRGTTTYYISYGALSANRIPCPPRSGRSYYTHNCFKARGPVHPYTRG 120

Query: 121 CSAITRCRR 126
           CS I+RCRR
Sbjct: 121 CSRISRCRR 128

[Close]

BLAST of Csa2G292820 vs. TrEMBL
Match: I3SH61_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 79/126 (62.70%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 2   ASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADA-LEWPTTTSLIQSPTEDDLDDDLD 61
           +S SLL  L   L L L +  A +  +TSLKLM+DA LEWP  T  +    E++ D + D
Sbjct: 3   SSSSLLLSLTLTLSLLLLAVDAQID-ETSLKLMSDAALEWPPATMSLYDNDEEEEDGEQD 62

Query: 62  LQQD-PRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSA 121
           ++    RRSLFWRRV YYISYGALSANRIPCPPRSGR YYTH+CYKARGPV+PY+RGCS 
Sbjct: 63  MENGFSRRSLFWRRVKYYISYGALSANRIPCPPRSGRSYYTHDCYKARGPVHPYSRGCSI 122

Query: 122 ITRCRR 126
           ITRCRR
Sbjct: 123 ITRCRR 127

[Close]

BLAST of Csa2G292820 vs. TAIR10
Match: AT5G67070.1 (AT5G67070.1 ralf-like 34)

HSP 1 Score: 139.0 bits (349), Expect = 1.9e-33
Identity = 72/130 (55.38%), Postives = 88/130 (67.69%), Query Frame = 1


Query: 1   MASKSLLFPLFTLLLLFLS-SSSAHLSVDTSLKLMADALEWPTTTS----LIQSPTEDDL 60
           MA+ SL   L   LL F+S   S  LS + SL L+ D  +WP + S    +I      ++
Sbjct: 1   MAASSLNLLLILSLLTFISLQRSESLSDNPSLTLLPDGFDWPISHSDEFDIIDGEESFEV 60

Query: 61  DDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTR 120
            ++ D   D RRSL+WRR  YYISYGALSANR+PCPPRSGR YYTHNC++ARGPV+PY+R
Sbjct: 61  TEEDDGVTD-RRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSR 120

Query: 121 GCSAITRCRR 126
           GCS+ITRCRR
Sbjct: 121 GCSSITRCRR 129

[Close]

BLAST of Csa2G292820 vs. TAIR10
Match: AT3G16570.1 (AT3G16570.1 rapid alkalinization factor 23)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 38/74 (51.35%), Postives = 43/74 (58.11%), Query Frame = 1


Query: 52  EDDLDDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVN 111
           E ++D +++     RR L  RR   YISYGAL  N IPC  R G  YY  NC +     N
Sbjct: 76  EFEMDSEIN-----RRILATRR---YISYGALRRNTIPCS-RRGASYY--NCRRG-AQAN 135

Query: 112 PYTRGCSAITRCRR 126
           PY+RGCSAITRCRR
Sbjct: 136 PYSRGCSAITRCRR 137

[Close]

BLAST of Csa2G292820 vs. TAIR10
Match: AT3G05490.1 (AT3G05490.1 ralf-like 22)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-09
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1


Query: 52  EDDLDDDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVN 111
           E++++ D D+    RR L  ++   YISYGA+  N +PC  R G  YY  NC +     N
Sbjct: 56  EEEMEFDSDIS---RRILAQKK---YISYGAMRRNSVPCS-RRGASYY--NCQRG-AQAN 115

Query: 112 PYTRGCSAITRCRR 126
           PY+RGCS ITRCRR
Sbjct: 116 PYSRGCSTITRCRR 119

[Close]

BLAST of Csa2G292820 vs. TAIR10
Match: AT4G15800.1 (AT4G15800.1 ralf-like 33)

HSP 1 Score: 57.8 bits (138), Expect = 5.7e-09
Identity = 30/49 (61.22%), Postives = 31/49 (63.27%), Query Frame = 1


Query: 77  YISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAITRCRR 126
           YISYGAL  N +PC  R G  YY  NC +     NPY+RGCSAITRCRR
Sbjct: 72  YISYGALRRNTVPCS-RRGASYY--NCRRG-AQANPYSRGCSAITRCRR 116

[Close]

BLAST of Csa2G292820 vs. TAIR10
Match: AT1G02900.1 (AT1G02900.1 rapid alkalinization factor 1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 40/121 (33.06%), Postives = 53/121 (43.80%), Query Frame = 1


Query: 7   LFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLDLQQDPR 66
           LF   T+L++F+ SS     V          + W TT     S     + + +  +++  
Sbjct: 7   LFLTLTILVVFIISSPP---VQAGFANDLGGVAWATTGDN-GSGCHGSIAECIGAEEEEM 66

Query: 67  RSLFWRRV---HYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAITRC 125
            S   RR+     YISY +L  N +PC  R G  YY  NC       NPY+RGCS I RC
Sbjct: 67  DSEINRRILATTKYISYQSLKRNSVPCS-RRGASYY--NCQNG-AQANPYSRGCSKIARC 119

[Close]

BLAST of Csa2G292820 vs. NCBI nr
Match: gi|449460676|ref|XP_004148071.1| (PREDICTED: protein RALF-like 34 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 5.7e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1


Query: 1   MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLD 60
           MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLD
Sbjct: 1   MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLD 60

Query: 61  LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAI 120
           LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAI
Sbjct: 61  LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAI 120

Query: 121 TRCRR 126
           TRCRR
Sbjct: 121 TRCRR 125

[Close]

BLAST of Csa2G292820 vs. NCBI nr
Match: gi|659116040|ref|XP_008457868.1| (PREDICTED: protein RALF-like 34 [Cucumis melo])

HSP 1 Score: 255.4 bits (651), Expect = 5.3e-65
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 1


Query: 1   MASKSLLFPLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTEDDLDDDLD 60
           MASKSLLF LFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPT+DDLDDDLD
Sbjct: 1   MASKSLLFLLFTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTDDDLDDDLD 60

Query: 61  LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAI 120
           LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPY+RGCSAI
Sbjct: 61  LQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAI 120

Query: 121 TRCRR 126
           TRCRR
Sbjct: 121 TRCRR 125

[Close]

BLAST of Csa2G292820 vs. NCBI nr
Match: gi|743817338|ref|XP_010930902.1| (PREDICTED: protein RALF-like 34 [Elaeis guineensis])

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-36
Identity = 79/129 (61.24%), Postives = 96/129 (74.42%), Query Frame = 1


Query: 6   LLFPLFTLLLLFLSSSSAHLSVD-TSLKLMADALEWPTTTSLIQSPT--------EDDLD 65
           L F L  ++L+F  S +    +D +SL+LM DA+EWPTTTSL  S +        E +LD
Sbjct: 7   LCFSLLVVVLVFSPSQNVEAEMDDSSLQLMTDAMEWPTTTSLYSSSSYPFGYEGDEGELD 66

Query: 66  DDLDLQQDPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRG 125
           +D    +D RR+LFWRR+ YYISYGALSANR+PCPPRSGR YYTHNCY+ARGPV+PY RG
Sbjct: 67  EDA---KDNRRALFWRRIQYYISYGALSANRVPCPPRSGRSYYTHNCYRARGPVHPYHRG 126

[Close]

BLAST of Csa2G292820 vs. NCBI nr
Match: gi|1009144459|ref|XP_015889813.1| (PREDICTED: protein RALF-like 34 [Ziziphus jujuba])

HSP 1 Score: 158.7 bits (400), Expect = 6.7e-36
Identity = 81/116 (69.83%), Postives = 90/116 (77.59%), Query Frame = 1


Query: 11  FTLLLLFLSSSSAHLSVDTSLKLMADALEWPTTTSLIQSPTE-DDLDDDLDLQQDPRRSL 70
           F +LL   S S A L  DTSLKLM+DALEWPTT S      E D+ ++D+D     RRSL
Sbjct: 15  FVILLGLCSFSDAQLD-DTSLKLMSDALEWPTTMSFYDELDEGDEEEEDVD-GAFGRRSL 74

Query: 71  FWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAITRCRR 126
           FWRR+ YYISYGALSANRIPCPPRSGR YYTHNC+KARGPV+PYTRGCS ITRCRR
Sbjct: 75  FWRRMRYYISYGALSANRIPCPPRSGRSYYTHNCFKARGPVHPYTRGCSRITRCRR 128

[Close]

BLAST of Csa2G292820 vs. NCBI nr
Match: gi|356541805|ref|XP_003539363.1| (PREDICTED: protein RALF-like 34 [Glycine max])

HSP 1 Score: 158.7 bits (400), Expect = 6.7e-36
Identity = 81/122 (66.39%), Postives = 95/122 (77.87%), Query Frame = 1


Query: 10  LFTL-LLLFLSSSSAHLSV-----DTSLKLMADALEWPTTTSLIQSPTEDDLDDDLDLQQ 69
           L TL LLLF  + ++H++V     DT+  LM+DALEWPTT SL     EDD  +D++   
Sbjct: 4   LLTLALLLFCIAFTSHVAVQAHMEDTAFNLMSDALEWPTTMSLYD---EDDAQEDVENAY 63

Query: 70  DPRRSLFWRRVHYYISYGALSANRIPCPPRSGRPYYTHNCYKARGPVNPYTRGCSAITRC 126
             RRSLFWRR+ YYISYGALSANRIPCPPRSGR YYTHNCY+ARGPV+PY+RGCSAITRC
Sbjct: 64  S-RRSLFWRRMKYYISYGALSANRIPCPPRSGRSYYTHNCYRARGPVHPYSRGCSAITRC 121

The following BLAST results are available for this feature:

BLAST of Csa2G292820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLF34_ARATH	3.5e-32	55.38	Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1	[more]
RLF23_ARATH	2.0e-08	51.35	Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1	[more]
RLF22_ARATH	7.8e-08	45.95	Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1	[more]
RLF33_ARATH	1.0e-07	61.22	Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1	[more]
RALF_TOBAC	1.0e-07	46.38	Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1	[more]

BLAST of Csa2G292820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMS2_CUCSA	3.9e-67	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292820 PE=4 SV=1	[more]
I1LHE0_SOYBN	4.7e-36	66.39	Uncharacterized protein OS=Glycine max GN=GLYMA_11G055200 PE=4 SV=1	[more]
V7CF83_PHAVU	4.0e-35	63.78	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G018200g PE=4 SV=1	[more]
W9R4K2_9ROSA	8.9e-35	65.89	Uncharacterized protein OS=Morus notabilis GN=L484_011056 PE=4 SV=1	[more]
I3SH61_LOTJA	1.2e-34	62.70	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Csa2G292820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67070.1	1.9e-33	55.38	ralf-like 34	[more]
AT3G16570.1	1.2e-09	51.35	rapid alkalinization factor 23	[more]
AT3G05490.1	4.4e-09	45.95	ralf-like 22	[more]
AT4G15800.1	5.7e-09	61.22	ralf-like 33	[more]
AT1G02900.1	1.2e-06	33.06	rapid alkalinization factor 1	[more]

BLAST of Csa2G292820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460676\|ref\|XP_004148071.1\|	5.7e-67	100.00	PREDICTED: protein RALF-like 34 [Cucumis sativus]	[more]
gi\|659116040\|ref\|XP_008457868.1\|	5.3e-65	97.60	PREDICTED: protein RALF-like 34 [Cucumis melo]	[more]
gi\|743817338\|ref\|XP_010930902.1\|	1.4e-36	61.24	PREDICTED: protein RALF-like 34 [Elaeis guineensis]	[more]
gi\|1009144459\|ref\|XP_015889813.1\|	6.7e-36	69.83	PREDICTED: protein RALF-like 34 [Ziziphus jujuba]	[more]
gi\|356541805\|ref\|XP_003539363.1\|	6.7e-36	66.39	PREDICTED: protein RALF-like 34 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0006949	syncytium formation
biological_process	GO:0007154	cell communication
biological_process	GO:0044700	single organism signaling
biological_process	GO:0008150	biological_process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0004871	signal transducer activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095674	cucumber EST collection version 3.0	transcribed_cluster
CU104689	cucumber EST collection version 3.0	transcribed_cluster
CU171461	cucumber EST collection version 3.0	transcribed_cluster
CU171634	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G292820.1	Csa2G292820.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU104689	CU104689	transcribed_cluster
CU171461	CU171461	transcribed_cluster
CU171634	CU171634	transcribed_cluster
CU095674	CU095674	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 66..125 score: 1.9
None	No IPR available	PANTHER	PTHR33136	FAMILY NOT NAMED	coord: 1..125 score: 1.3
None	No IPR available	PANTHER	PTHR33136:SF7	PROTEIN RALF-LIKE 26-RELATED	coord: 1..125 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G292820	MELO3C020932	Melon (DHL92) v3.5.1	cumeB099
Csa2G292820	Lsi10G006340	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G292820	MELO3C020932.2	Melon (DHL92) v3.6.1	cumedB090
Csa2G292820	Bhi10G001824	Wax gourd	cuwgoB175
Csa2G292820	CSPI02G14730	Wild cucumber (PI 183967)	cpicuB065
Csa2G292820	Cucsa.366420	Cucumber (Gy14) v1	cgycuB513
Csa2G292820	CmaCh20G011300	Cucurbita maxima (Rimu)	cmacuB543
Csa2G292820	CmoCh20G011640	Cucurbita moschata (Rifu)	cmocuB532
Csa2G292820	Cp4.1LG16g00300	Cucurbita pepo (Zucchini)	cpecuB268
Csa2G292820	CsGy2G014760	Cucumber (Gy14) v2	cgybcuB056
Csa2G292820	Carg20939	Silver-seed gourd	carcuB1006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G292820	Silver-seed gourd	carcuB1070
Csa2G292820	Watermelon (97103) v2	cuwmbB115
Csa2G292820	Cucurbita maxima (Rimu)	cmacuB582
Csa2G292820	Cucurbita maxima (Rimu)	cmacuB653
Csa2G292820	Cucurbita moschata (Rifu)	cmocuB571
Csa2G292820	Cucurbita moschata (Rifu)	cmocuB641
Csa2G292820	Watermelon (Charleston Gray)	cuwcgB119
Csa2G292820	Watermelon (97103) v1	cuwmB140
Csa2G292820	Cucurbita pepo (Zucchini)	cpecuB710