Csa2G287120 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G287120
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 13714997 .. 13715347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATTCTTCAAATGGTTTCGCCATTGGAAAAGTAACTTCAAAGCAACAAAAATGGGCAGAAGCAGACGCAATGTTCTTGAGAAAACTAAGCTTAAACAAGAACGAGAATGAGAAGGAGAAGAAGATGAAGAAAGATGAGACATTGGGTTATTCCTCTTCAGTTTTTGGGTTTGAAAAATATAGAAGTAACGATATTATTAACTATTCAAGACAAAGGTATTTGAGAAGCTACAAATTTAACGATGATCATAAAGAAGATGATGTTGATCAGGTTCAAAAGACAAGTCCTTTTGAAAAGGTGATAAATTTTTTTAAATTAAAATCAATAGCAATGCCAATTAAGTAA

mRNA sequence

ATGGATTATTCTTCAAATGGTTTCGCCATTGGAAAAGTAACTTCAAAGCAACAAAAATGGGCAGAAGCAGACGCAATGTTCTTGAGAAAACTAAGCTTAAACAAGAACGAGAATGAGAAGGAGAAGAAGATGAAGAAAGATGAGACATTGGGTTATTCCTCTTCAGTTTTTGGGTTTGAAAAATATAGAAGTAACGATATTATTAACTATTCAAGACAAAGGTATTTGAGAAGCTACAAATTTAACGATGATCATAAAGAAGATGATGTTGATCAGGTTCAAAAGACAAGTCCTTTTGAAAAGGTGATAAATTTTTTTAAATTAAAATCAATAGCAATGCCAATTAAGTAA

Coding sequence (CDS)

ATGGATTATTCTTCAAATGGTTTCGCCATTGGAAAAGTAACTTCAAAGCAACAAAAATGGGCAGAAGCAGACGCAATGTTCTTGAGAAAACTAAGCTTAAACAAGAACGAGAATGAGAAGGAGAAGAAGATGAAGAAAGATGAGACATTGGGTTATTCCTCTTCAGTTTTTGGGTTTGAAAAATATAGAAGTAACGATATTATTAACTATTCAAGACAAAGGTATTTGAGAAGCTACAAATTTAACGATGATCATAAAGAAGATGATGTTGATCAGGTTCAAAAGACAAGTCCTTTTGAAAAGGTGATAAATTTTTTTAAATTAAAATCAATAGCAATGCCAATTAAGTAA

Protein sequence

MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK*

Homology

[Close]

BLAST of Csa2G287120 vs. TrEMBL
Match: A0A0A0LJK1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287120 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60
           MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE
Sbjct: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60

Query: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 117
           KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK
Sbjct: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 116

[Close]

BLAST of Csa2G287120 vs. NCBI nr
Match: gi|700206911|gb|KGN62030.1| (hypothetical protein Csa_2G287120 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.0e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1


Query: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60
           MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE
Sbjct: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60

Query: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 117
           KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK
Sbjct: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 116

The following BLAST results are available for this feature:

BLAST of Csa2G287120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJK1_CUCSA	2.8e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287120 PE=4 SV=1	[more]

BLAST of Csa2G287120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206911\|gb\|KGN62030.1\|	4.0e-59	100.00	hypothetical protein Csa_2G287120 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G287120.1	Csa2G287120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 28..48 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G287120	ClCG02G012980	Watermelon (Charleston Gray)	cuwcgB119
Csa2G287120	Cla97C02G038650	Watermelon (97103) v2	cuwmbB115
Csa2G287120	Bhi10G001793	Wax gourd	cuwgoB175
Csa2G287120	CSPI02G14510	Wild cucumber (PI 183967)	cpicuB065
Csa2G287120	Cp4.1LG05g11140	Cucurbita pepo (Zucchini)	cpecuB710
Csa2G287120	CsGy2G014460	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G287120	Wax gourd	cuwgoB186
Csa2G287120	Cucumber (Gy14) v1	cgycuB513
Csa2G287120	Cucurbita maxima (Rimu)	cmacuB543
Csa2G287120	Cucurbita maxima (Rimu)	cmacuB582
Csa2G287120	Cucurbita moschata (Rifu)	cmocuB532
Csa2G287120	Cucurbita moschata (Rifu)	cmocuB571
Csa2G287120	Melon (DHL92) v3.5.1	cumeB099
Csa2G287120	Watermelon (97103) v1	cuwmB140
Csa2G287120	Cucurbita pepo (Zucchini)	cpecuB268
Csa2G287120	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G287120	Melon (DHL92) v3.6.1	cumedB083
Csa2G287120	Silver-seed gourd	carcuB1070