Csa2G276990 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G276990
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 13159476 .. 13159825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGCCCTTGACAAAGTTCGCTCTCTTCTTCCTAATGGTCTTCATTATCTCAGGTATATCAGTCGATTTGTATTGTTTATATATAGCCTTTTTTTTTCTTTTTGCAATAGTTATCTTATTGTATGACAATTTAACAATTGTATCACTTCAGAAAAATTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCCTGCCAAAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCACATGGATTGGAAAAGAAATTTCTTCACAAAGCCTTTCCAGAATCTTTGAGAGAAGATCGAAAAGGCAATGCTCCTTAA

mRNA sequence

ATGGTGAAGCCCTTGACAAAGTTCGCTCTCTTCTTCCTAATGGTCTTCATTATCTCAGAAAAATTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCCTGCCAAAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCACATGGATTGGAAAAGAAATTTCTTCACAAAGCCTTTCCAGAATCTTTGAGAGAAGATCGAAAAGGCAATGCTCCTTAA

Coding sequence (CDS)

ATGGTGAAGCCCTTGACAAAGTTCGCTCTCTTCTTCCTAATGGTCTTCATTATCTCAGAAAAATTGTTCGTGTCAGATGCCAGAAATGTTGTAAACATTCCCTGCCAAAGTCGTATTGATTGTTCTGATCCATGGGACTGTGATTGCAAGCTCAACCTATGTTTTTGTCACCCACATGGATTGGAAAAGAAATTTCTTCACAAAGCCTTTCCAGAATCTTTGAGAGAAGATCGAAAAGGCAATGCTCCTTAA

Protein sequence

MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHGLEKKFLHKAFPESLREDRKGNAP*

Homology

[Close]

BLAST of Csa2G276990 vs. TrEMBL
Match: A0A0A0LMG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.5e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLHKAFPESLREDRKGNAP 84
          LEKKFLHKAFPESLREDRKGNAP
Sbjct: 61 LEKKFLHKAFPESLREDRKGNAP 83

[Close]

BLAST of Csa2G276990 vs. TrEMBL
Match: A0A0A0LJR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.4e-30
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 1


Query: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVK  TK AL  LM FIISE  FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLHKAFPESLREDR 79
          LEKKFLH AFPE LRE++
Sbjct: 61 LEKKFLHNAFPEHLREEK 77

[Close]

BLAST of Csa2G276990 vs. NCBI nr
Match: gi|700206838|gb|KGN61957.1| (hypothetical protein Csa_2G276990 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 6.5e-43
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLHKAFPESLREDRKGNAP 84
          LEKKFLHKAFPESLREDRKGNAP
Sbjct: 61 LEKKFLHKAFPESLREDRKGNAP 83

[Close]

BLAST of Csa2G276990 vs. NCBI nr
Match: gi|700206874|gb|KGN61993.1| (hypothetical protein Csa_2G285280 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 6.3e-30
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 1


Query: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCSDPWDCDCKLNLCFCHPHG 60
          MVK  TK AL  LM FIISE  FV+DARNVVNIPC SRIDCSDPWDCDCKLNLCFCHPHG
Sbjct: 1  MVKSSTKLALLLLMFFIISET-FVADARNVVNIPCNSRIDCSDPWDCDCKLNLCFCHPHG 60

Query: 61 LEKKFLHKAFPESLREDR 79
          LEKKFLH AFPE LRE++
Sbjct: 61 LEKKFLHNAFPEHLREEK 77

The following BLAST results are available for this feature:

BLAST of Csa2G276990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMG3_CUCSA	4.5e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G276990 PE=4 SV=1	[more]
A0A0A0LJR0_CUCSA	4.4e-30	82.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285280 PE=4 SV=1	[more]

BLAST of Csa2G276990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206838\|gb\|KGN61957.1\|	6.5e-43	100.00	hypothetical protein Csa_2G276990 [Cucumis sativus]	[more]
gi\|700206874\|gb\|KGN61993.1\|	6.3e-30	82.05	hypothetical protein Csa_2G285280 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G276990.1	Csa2G276990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G276990	ClCG02G012580	Watermelon (Charleston Gray)	cuwcgB125
Csa2G276990	MELO3C034682.2	Melon (DHL92) v3.6.1	cumedB082

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G276990	Watermelon (97103) v1	cuwmB140
Csa2G276990	Cucurbita pepo (Zucchini)	cpecuB235
Csa2G276990	Cucurbita pepo (Zucchini)	cpecuB479
Csa2G276990	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G276990	Cucumber (Gy14) v2	cgybcuB056
Csa2G276990	Silver-seed gourd	carcuB0341
Csa2G276990	Silver-seed gourd	carcuB0818
Csa2G276990	Watermelon (97103) v2	cuwmbB115
Csa2G276990	Wax gourd	cuwgoB182
Csa2G276990	Cucurbita maxima (Rimu)	cmacuB852
Csa2G276990	Cucurbita moschata (Rifu)	cmocuB839
Csa2G276990	Watermelon (Charleston Gray)	cuwcgB119