Csa2G109710 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G109710
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 7731741 .. 7732193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTTGGGGTATGAGGTGAAGCTGGAAGGAGGAGTACGTAATGGCAAGTGAAATGGACAAAGCAGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGGAGTGAATGGAATCTAGGACTGGGCATAGATTTCGATGGCGGCACATATTTGGTGGCGACTAATTAG

mRNA sequence

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGGAGTGAATGGAATCTAGGACTGGGCATAGATTTCGATGGCGGCACATATTTGGTGGCGACTAATTAG

Coding sequence (CDS)

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGGAGTGAATGGAATCTAGGACTGGGCATAGATTTCGATGGCGGCACATATTTGGTGGCGACTAATTAG

Protein sequence

MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFDGGTYLVATN*

Homology

[Close]

BLAST of Csa2G109710 vs. TrEMBL
Match: A0A0A0LJZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G109710 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 6.7e-70
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60
           MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK
Sbjct: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60

Query: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120
           NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD
Sbjct: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120

Query: 121 GGTYLVATN 130
           GGTYLVATN
Sbjct: 121 GGTYLVATN 129

[Close]

BLAST of Csa2G109710 vs. NCBI nr
Match: gi|700206275|gb|KGN61394.1| (hypothetical protein Csa_2G109710 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 9.6e-70
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60
           MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK
Sbjct: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVNLREGRSERWSVAKRMEPCSEVSK 60

Query: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120
           NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD
Sbjct: 61  NKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKRSEWNLGLGIDFD 120

Query: 121 GGTYLVATN 130
           GGTYLVATN
Sbjct: 121 GGTYLVATN 129

The following BLAST results are available for this feature:

BLAST of Csa2G109710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJZ6_CUCSA	6.7e-70	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G109710 PE=4 SV=1	[more]

BLAST of Csa2G109710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206275\|gb\|KGN61394.1\|	9.6e-70	100.00	hypothetical protein Csa_2G109710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G109710.1	Csa2G109710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G109710	CsGy2G008740	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G109710	Wax gourd	cuwgoB140
Csa2G109710	Cucumber (Gy14) v1	cgycuB382
Csa2G109710	Cucurbita maxima (Rimu)	cmacuB793
Csa2G109710	Cucurbita moschata (Rifu)	cmocuB779
Csa2G109710	Melon (DHL92) v3.5.1	cumeB132
Csa2G109710	Cucurbita pepo (Zucchini)	cpecuB107
Csa2G109710	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G109710	Melon (DHL92) v3.6.1	cumedB135