CsGy2G008740 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G008740
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr2 : 7841115 .. 7841501 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTTGGGGTATGAGGTGAAGCTGGAAGGAGGAGTACGTAATGGCAAGTGAAATGGACAAAGCAGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGG

mRNA sequence

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTTGGGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGG

Coding sequence (CDS)

ATGGAATCGAATCGGTTACATGGAATCAAGCCAGTTTGGACCATCACTTCAAAATCGAAACCAATATTTCGTGAAACCTCCATTCCACAGAAACCCACGACAGAGGTTGGGGTGAATCTGAGGGAAGGCAGATCTGAGAGGTGGAGTGTAGCGAAGCGAATGGAACCATGCAGTGAAGTTAGCAAAAACAAGCAAAGCAACACGAACGACAACGACTTAGAATCTAGGAAGATGGCGACTGATCTAGAGCGATGGTTGCTCTGCAAAAGTGGCGGACCTGGCGGTGTGGTGGGTCAGTGTAAATCTAGTCATGAATCGAATCATAAACGG

Protein sequence

MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVGVNLREGRSERWSVAKRMEPCSEVSKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKR
Homology
[Close]
BLAST of CsGy2G008740 vs. NCBI nr
Match: KGN61394.1 (hypothetical protein Csa_2G109710 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 5.5e-54
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVGVNLREGRSERWSVAKRMEPCSEV 60
           MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTE  VNLREGRSERWSVAKRMEPCSEV
Sbjct: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTE--VNLREGRSERWSVAKRMEPCSEV 60

Query: 61  SKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKR 111
           SKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKR
Sbjct: 61  SKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKR 108

[Close]
BLAST of CsGy2G008740 vs. TrEMBL
Match: tr|A0A0A0LJZ6|A0A0A0LJZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G109710 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.6e-54
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTEVGVNLREGRSERWSVAKRMEPCSEV 60
           MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTE  VNLREGRSERWSVAKRMEPCSEV
Sbjct: 1   MESNRLHGIKPVWTITSKSKPIFRETSIPQKPTTE--VNLREGRSERWSVAKRMEPCSEV 60

Query: 61  SKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKR 111
           SKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKR
Sbjct: 61  SKNKQSNTNDNDLESRKMATDLERWLLCKSGGPGGVVGQCKSSHESNHKR 108

The following BLAST results are available for this feature:
BLAST of CsGy2G008740 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61394.15.5e-5498.18hypothetical protein Csa_2G109710 [Cucumis sativus][more]
BLAST of CsGy2G008740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G008740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G008740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJZ6|A0A0A0LJZ6_CUCSA3.6e-5498.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G109710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G008740.1CsGy2G008740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G008740Csa2G109710Cucumber (Chinese Long) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G008740Cucumber (Chinese Long) v3cgybcucB064
CsGy2G008740Wax gourdcgybwgoB134
CsGy2G008740Cucurbita maxima (Rimu)cgybcmaB259
CsGy2G008740Cucurbita moschata (Rifu)cgybcmoB240
CsGy2G008740Cucurbita pepo (Zucchini)cgybcpeB171
CsGy2G008740Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G008740Melon (DHL92) v3.5.1cgybmeB124
CsGy2G008740Melon (DHL92) v3.6.1cgybmedB122
CsGy2G008740Watermelon (Charleston Gray)cgybwcgB100
CsGy2G008740Watermelon (97103) v1cgybwmB150
CsGy2G008740Wild cucumber (PI 183967)cgybcpiB056